EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005003815 (Gene tree)
Gene ID: 101466821
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 5107 bases
Position: chrLG4:29934110-29939216
Accession: 101466821
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005004910	Btz	PF09405.10	3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005005124	-	2314	XM_004556489	ENSMZEP00005004910	762 (aa)	XP_004556546	UPI000329CFE7

Gene Model

Click here to download ENSMZEG00005003815's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005003815's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005003815	casc3	80	54.098	ENSG00000108349	CASC3	68	66.234	Homo_sapiens
ENSMZEG00005003815	casc3	100	75.450	ENSAPOG00000008467	casc3	100	76.637	Acanthochromis_polyacanthus
ENSMZEG00005003815	casc3	85	94.118	ENSACIG00000000720	casc3	82	95.152	Amphilophus_citrinellus
ENSMZEG00005003815	casc3	100	76.843	ENSAOCG00000016676	casc3	100	77.778	Amphiprion_ocellaris
ENSMZEG00005003815	casc3	100	76.684	ENSAPEG00000006787	casc3	95	76.287	Amphiprion_percula
ENSMZEG00005003815	casc3	100	80.897	ENSATEG00000017196	casc3	100	80.513	Anabas_testudineus
ENSMZEG00005003815	casc3	77	53.465	ENSANAG00000034820	-	86	53.438	Aotus_nancymaae
ENSMZEG00005003815	casc3	52	63.462	ENSANAG00000031954	-	84	65.385	Aotus_nancymaae
ENSMZEG00005003815	casc3	100	100.000	ENSACLG00000016198	casc3	100	100.000	Astatotilapia_calliptera
ENSMZEG00005003815	casc3	81	54.574	ENSBTAG00000006250	CASC3	64	67.532	Bos_taurus
ENSMZEG00005003815	casc3	80	54.455	ENSCAFG00020018882	CASC3	81	54.517	Canis_lupus_dingo
ENSMZEG00005003815	casc3	60	60.000	ENSCAPG00000010514	CASC3	75	68.182	Cavia_aperea
ENSMZEG00005003815	casc3	80	53.618	ENSCPOG00000015139	CASC3	83	55.975	Cavia_porcellus
ENSMZEG00005003815	casc3	78	50.464	ENSCPBG00000004750	CASC3	72	66.013	Chrysemys_picta_bellii
ENSMZEG00005003815	casc3	100	69.987	ENSCSEG00000010047	casc3	100	69.659	Cynoglossus_semilaevis
ENSMZEG00005003815	casc3	100	73.874	ENSCVAG00000014935	casc3	100	74.708	Cyprinodon_variegatus
ENSMZEG00005003815	casc3	81	35.647	ENSEBUG00000010654	casc3	76	37.607	Eptatretus_burgeri
ENSMZEG00005003815	casc3	80	55.016	ENSEASG00005002909	CASC3	82	55.247	Equus_asinus_asinus
ENSMZEG00005003815	casc3	100	57.528	ENSELUG00000015093	casc3	100	56.532	Esox_lucius
ENSMZEG00005003815	casc3	91	42.000	ENSFALG00000000412	CASC3	82	53.846	Ficedula_albicollis
ENSMZEG00005003815	casc3	100	72.798	ENSFHEG00000015793	casc3	100	72.739	Fundulus_heteroclitus
ENSMZEG00005003815	casc3	86	46.914	ENSGALG00000031813	CASC3	82	52.997	Gallus_gallus
ENSMZEG00005003815	casc3	98	75.489	ENSGAFG00000017148	casc3	86	75.455	Gambusia_affinis
ENSMZEG00005003815	casc3	63	67.333	ENSGAGG00000008432	CASC3	77	69.231	Gopherus_agassizii
ENSMZEG00005003815	casc3	100	99.475	ENSHBUG00000013155	casc3	100	99.475	Haplochromis_burtoni
ENSMZEG00005003815	casc3	100	64.185	ENSHCOG00000002664	casc3	94	62.842	Hippocampus_comes
ENSMZEG00005003815	casc3	77	54.167	ENSJJAG00000023525	Casc3	82	54.259	Jaculus_jaculus
ENSMZEG00005003815	casc3	93	75.770	ENSKMAG00000019507	casc3	99	75.000	Kryptolebias_marmoratus
ENSMZEG00005003815	casc3	96	74.003	ENSLBEG00000005435	casc3	100	73.300	Labrus_bergylta
ENSMZEG00005003815	casc3	80	55.410	ENSMFAG00000041496	CASC3	82	55.901	Macaca_fascicularis
ENSMZEG00005003815	casc3	96	75.737	ENSMAMG00000005235	casc3	95	74.866	Mastacembelus_armatus
ENSMZEG00005003815	casc3	89	41.772	ENSMGAG00000013247	CASC3	82	53.304	Meleagris_gallopavo
ENSMZEG00005003815	casc3	100	70.716	ENSMMOG00000014339	casc3	100	70.566	Mola_mola
ENSMZEG00005003815	casc3	57	61.783	ENSMODG00000013044	CASC3	65	55.949	Monodelphis_domestica
ENSMZEG00005003815	casc3	62	97.000	ENSMALG00000019771	casc3	84	87.805	Monopterus_albus
ENSMZEG00005003815	casc3	100	97.258	ENSONIG00000009337	casc3	100	97.258	Oreochromis_niloticus
ENSMZEG00005003815	casc3	100	67.137	ENSORLG00000023125	casc3	100	67.834	Oryzias_latipes
ENSMZEG00005003815	casc3	80	54.098	ENSPPAG00000035069	CASC3	74	55.205	Pan_paniscus
ENSMZEG00005003815	casc3	67	53.158	ENSPANG00000021708	CASC3	66	53.535	Papio_anubis
ENSMZEG00005003815	casc3	99	70.481	ENSPFOG00000017632	casc3	96	74.377	Poecilia_formosa
ENSMZEG00005003815	casc3	100	75.964	ENSPLAG00000005268	casc3	100	75.000	Poecilia_latipinna
ENSMZEG00005003815	casc3	56	78.363	ENSPMEG00000010299	casc3	68	87.407	Poecilia_mexicana
ENSMZEG00005003815	casc3	78	76.759	ENSPREG00000011856	casc3	91	75.574	Poecilia_reticulata
ENSMZEG00005003815	casc3	80	55.116	ENSPPYG00000008467	CASC3	83	56.698	Pongo_abelii
ENSMZEG00005003815	casc3	100	99.606	ENSPNYG00000011962	casc3	100	99.606	Pundamilia_nyererei
ENSMZEG00005003815	casc3	66	54.747	ENSRNOG00000009716	Casc3	80	56.051	Rattus_norvegicus
ENSMZEG00005003815	casc3	100	69.004	ENSSMAG00000016096	casc3	100	71.197	Scophthalmus_maximus
ENSMZEG00005003815	casc3	100	77.308	ENSSDUG00000016893	casc3	95	78.772	Seriola_dumerili
ENSMZEG00005003815	casc3	82	78.348	ENSSLDG00000020308	casc3	100	83.286	Seriola_lalandi_dorsalis
ENSMZEG00005003815	casc3	100	76.953	ENSSPAG00000023008	casc3	100	76.697	Stegastes_partitus
ENSMZEG00005003815	casc3	72	54.098	ENSSSCG00000017477	CASC3	71	68.212	Sus_scrofa
ENSMZEG00005003815	casc3	96	69.906	ENSTRUG00000000673	casc3	95	67.896	Takifugu_rubripes
ENSMZEG00005003815	casc3	100	63.212	ENSTNIG00000003208	casc3	94	70.241	Tetraodon_nigroviridis
ENSMZEG00005003815	casc3	78	54.369	ENSUAMG00000015116	CASC3	81	54.517	Ursus_americanus
ENSMZEG00005003815	casc3	60	58.289	ENSUMAG00000017697	CASC3	85	67.133	Ursus_maritimus
ENSMZEG00005003815	casc3	100	76.667	ENSXMAG00000013937	casc3	100	76.667	Xiphophorus_maculatus