EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005004126 (Gene tree)
Gene ID: 106676806
Gene Symbol: tdp2b (1 of many)
Alias: -
Full Name: tyrosyl-DNA phosphodiesterase 2
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 20116 bases
Position: chrLG22:16221065-16241180
Accession: 106676806
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005005327	Exo_endo_phos	PF03372.23	5e-08	1	1
ENSMZEP00005005322	Exo_endo_phos	PF03372.23	5.8e-08	1	1
ENSMZEP00005005328	Exo_endo_phos	PF03372.23	5.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005005551	-	1823	-	ENSMZEP00005005322	292 (aa)	-	UPI000D2F7D43
ENSMZET00005005556	-	912	-	ENSMZEP00005005327	303 (aa)	-	-
ENSMZET00005005557	-	1793	XM_014414154	ENSMZEP00005005328	292 (aa)	XP_014269640	UPI000D2F7D43

Gene Model

Click here to download ENSMZEG00005004126's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005004126's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005004126	tdp2b	96	48.333	ENSG00000111802	TDP2	98	48.333	Homo_sapiens
ENSMZEG00005004126	tdp2b	88	64.865	ENSAPOG00000018379	-	91	64.865	Acanthochromis_polyacanthus
ENSMZEG00005004126	tdp2b	91	49.064	ENSAMEG00000010230	TDP2	97	50.000	Ailuropoda_melanoleuca
ENSMZEG00005004126	tdp2b	66	56.477	ENSAOCG00000010081	-	85	56.477	Amphiprion_ocellaris
ENSMZEG00005004126	tdp2b	89	63.359	ENSAPEG00000004208	-	94	63.359	Amphiprion_percula
ENSMZEG00005004126	tdp2b	99	58.784	ENSATEG00000010663	-	96	58.784	Anabas_testudineus
ENSMZEG00005004126	tdp2b	95	50.000	ENSACAG00000002332	TDP2	78	50.174	Anolis_carolinensis
ENSMZEG00005004126	tdp2b	99	48.464	ENSANAG00000020033	TDP2	77	49.643	Aotus_nancymaae
ENSMZEG00005004126	tdp2b	100	96.284	ENSACLG00000016132	tdp2b	100	96.284	Astatotilapia_calliptera
ENSMZEG00005004126	tdp2b	100	97.973	ENSACLG00000016174	tdp2b	100	97.973	Astatotilapia_calliptera
ENSMZEG00005004126	tdp2b	95	80.072	ENSACLG00000016148	tdp2b	94	82.824	Astatotilapia_calliptera
ENSMZEG00005004126	tdp2b	96	61.566	ENSAMXG00000011775	tdp2b	74	61.566	Astyanax_mexicanus
ENSMZEG00005004126	tdp2b	89	51.136	ENSAMXG00000036549	tdp2a	86	50.000	Astyanax_mexicanus
ENSMZEG00005004126	tdp2b	99	46.102	ENSBTAG00000000365	TDP2	80	46.102	Bos_taurus
ENSMZEG00005004126	tdp2b	86	31.128	WBGene00013405	tdpt-1	73	31.273	Caenorhabditis_elegans
ENSMZEG00005004126	tdp2b	98	48.464	ENSCJAG00000021963	-	80	48.464	Callithrix_jacchus
ENSMZEG00005004126	tdp2b	94	50.179	ENSCJAG00000006074	TDP2	94	49.135	Callithrix_jacchus
ENSMZEG00005004126	tdp2b	99	46.416	ENSCAFG00000010428	TDP2	93	49.635	Canis_familiaris
ENSMZEG00005004126	tdp2b	92	48.699	ENSCAFG00020009994	TDP2	93	49.635	Canis_lupus_dingo
ENSMZEG00005004126	tdp2b	90	49.057	ENSCHIG00000015294	-	91	48.889	Capra_hircus
ENSMZEG00005004126	tdp2b	99	48.443	ENSTSYG00000037199	TDP2	93	48.443	Carlito_syrichta
ENSMZEG00005004126	tdp2b	91	49.624	ENSCPOG00000006390	TDP2	79	49.301	Cavia_porcellus
ENSMZEG00005004126	tdp2b	99	48.123	ENSCCAG00000022734	TDP2	94	48.443	Cebus_capucinus
ENSMZEG00005004126	tdp2b	96	48.000	ENSCATG00000022076	TDP2	98	48.000	Cercocebus_atys
ENSMZEG00005004126	tdp2b	97	47.917	ENSCLAG00000002072	TDP2	80	47.917	Chinchilla_lanigera
ENSMZEG00005004126	tdp2b	95	48.936	ENSCSAG00000007769	TDP2	78	48.936	Chlorocebus_sabaeus
ENSMZEG00005004126	tdp2b	93	50.000	ENSCPBG00000006551	TDP2	70	50.000	Chrysemys_picta_bellii
ENSMZEG00005004126	tdp2b	95	48.582	ENSCANG00000040122	TDP2	98	47.492	Colobus_angolensis_palliatus
ENSMZEG00005004126	tdp2b	91	48.201	ENSCGRG00001000384	Tdp2	74	48.201	Cricetulus_griseus_chok1gshd
ENSMZEG00005004126	tdp2b	90	48.727	ENSCGRG00000010250	Tdp2	78	48.727	Cricetulus_griseus_crigri
ENSMZEG00005004126	tdp2b	95	71.223	ENSCVAG00000003114	tdp2b	76	71.223	Cyprinodon_variegatus
ENSMZEG00005004126	tdp2b	84	51.417	ENSDARG00000069941	tdp2a	55	51.417	Danio_rerio
ENSMZEG00005004126	tdp2b	94	61.972	ENSDARG00000035954	tdp2b	74	61.972	Danio_rerio
ENSMZEG00005004126	tdp2b	99	47.782	ENSDNOG00000044082	TDP2	79	47.782	Dasypus_novemcinctus
ENSMZEG00005004126	tdp2b	91	51.685	ENSETEG00000019096	TDP2	96	51.103	Echinops_telfairi
ENSMZEG00005004126	tdp2b	88	44.402	ENSEBUG00000006535	tdp2a	63	43.333	Eptatretus_burgeri
ENSMZEG00005004126	tdp2b	99	46.552	ENSEASG00005007656	TDP2	80	46.552	Equus_asinus_asinus
ENSMZEG00005004126	tdp2b	99	46.552	ENSECAG00000014264	TDP2	80	46.552	Equus_caballus
ENSMZEG00005004126	tdp2b	91	46.099	ENSEEUG00000010776	TDP2	79	46.099	Erinaceus_europaeus
ENSMZEG00005004126	tdp2b	91	64.576	ENSELUG00000016449	tdp2b	71	64.576	Esox_lucius
ENSMZEG00005004126	tdp2b	97	48.070	ENSELUG00000009321	tdp2a	86	46.316	Esox_lucius
ENSMZEG00005004126	tdp2b	99	47.241	ENSFCAG00000025612	TDP2	80	47.241	Felis_catus
ENSMZEG00005004126	tdp2b	93	51.095	ENSFALG00000004710	TDP2	76	51.095	Ficedula_albicollis
ENSMZEG00005004126	tdp2b	92	50.186	ENSFDAG00000006512	TDP2	96	49.822	Fukomys_damarensis
ENSMZEG00005004126	tdp2b	93	58.974	ENSFHEG00000013560	-	96	57.194	Fundulus_heteroclitus
ENSMZEG00005004126	tdp2b	93	50.730	ENSGALG00000013637	TDP2	78	48.454	Gallus_gallus
ENSMZEG00005004126	tdp2b	93	50.000	ENSGAGG00000002853	TDP2	70	50.000	Gopherus_agassizii
ENSMZEG00005004126	tdp2b	99	48.464	ENSGGOG00000014237	TDP2	98	47.826	Gorilla_gorilla
ENSMZEG00005004126	tdp2b	99	79.125	ENSHBUG00000002714	tdp2b	82	79.125	Haplochromis_burtoni
ENSMZEG00005004126	tdp2b	72	82.775	ENSHBUG00000005421	-	94	77.232	Haplochromis_burtoni
ENSMZEG00005004126	tdp2b	94	50.181	ENSHGLG00000008655	TDP2	77	50.181	Heterocephalus_glaber_female
ENSMZEG00005004126	tdp2b	94	50.181	ENSHGLG00100019087	TDP2	77	50.181	Heterocephalus_glaber_male
ENSMZEG00005004126	tdp2b	98	60.417	ENSIPUG00000013691	tdp2b	76	60.417	Ictalurus_punctatus
ENSMZEG00005004126	tdp2b	84	50.204	ENSJJAG00000021685	Tdp2	70	50.204	Jaculus_jaculus
ENSMZEG00005004126	tdp2b	88	62.257	ENSKMAG00000015485	-	82	62.257	Kryptolebias_marmoratus
ENSMZEG00005004126	tdp2b	99	47.945	ENSLACG00000008852	TDP2	79	47.945	Latimeria_chalumnae
ENSMZEG00005004126	tdp2b	94	54.874	ENSLOCG00000005817	tdp2b	99	54.874	Lepisosteus_oculatus
ENSMZEG00005004126	tdp2b	99	48.973	ENSLAFG00000002567	TDP2	82	48.973	Loxodonta_africana
ENSMZEG00005004126	tdp2b	95	48.936	ENSMFAG00000045296	TDP2	98	47.492	Macaca_fascicularis
ENSMZEG00005004126	tdp2b	95	48.936	ENSMMUG00000009803	TDP2	78	48.936	Macaca_mulatta
ENSMZEG00005004126	tdp2b	95	48.936	ENSMNEG00000038003	TDP2	98	47.826	Macaca_nemestrina
ENSMZEG00005004126	tdp2b	95	48.936	ENSMLEG00000028883	TDP2	98	47.855	Mandrillus_leucophaeus
ENSMZEG00005004126	tdp2b	98	67.133	ENSMAMG00000013654	tdp2b	76	69.853	Mastacembelus_armatus
ENSMZEG00005004126	tdp2b	100	77.740	ENSMZEG00005004077	tdp2b	99	77.740	Maylandia_zebra
ENSMZEG00005004126	tdp2b	99	77.778	ENSMZEG00005003950	tdp2b	82	77.778	Maylandia_zebra
ENSMZEG00005004126	tdp2b	87	96.838	ENSMZEG00005004055	tdp2b	84	97.610	Maylandia_zebra
ENSMZEG00005004126	tdp2b	92	81.716	ENSMZEG00005004153	tdp2b	95	81.716	Maylandia_zebra
ENSMZEG00005004126	tdp2b	91	91.011	ENSMZEG00005004103	tdp2b	96	85.467	Maylandia_zebra
ENSMZEG00005004126	tdp2b	86	92.969	ENSMZEG00005003980	-	83	92.969	Maylandia_zebra
ENSMZEG00005004126	tdp2b	96	50.000	ENSMGAG00000008014	TDP2	76	50.000	Meleagris_gallopavo
ENSMZEG00005004126	tdp2b	91	47.482	ENSMAUG00000014451	Tdp2	74	47.482	Mesocricetus_auratus
ENSMZEG00005004126	tdp2b	99	47.099	ENSMICG00000000039	TDP2	98	48.639	Microcebus_murinus
ENSMZEG00005004126	tdp2b	96	48.936	ENSMOCG00000002823	Tdp2	73	48.936	Microtus_ochrogaster
ENSMZEG00005004126	tdp2b	75	52.968	ENSMODG00000011653	TDP2	66	53.241	Monodelphis_domestica
ENSMZEG00005004126	tdp2b	96	57.192	ENSMALG00000005368	-	98	57.192	Monopterus_albus
ENSMZEG00005004126	tdp2b	91	50.719	MGP_CAROLIEiJ_G0018354	Tdp2	74	50.719	Mus_caroli
ENSMZEG00005004126	tdp2b	90	52.273	ENSMUSG00000035958	Tdp2	74	50.000	Mus_musculus
ENSMZEG00005004126	tdp2b	96	48.582	MGP_PahariEiJ_G0019417	Tdp2	74	48.561	Mus_pahari
ENSMZEG00005004126	tdp2b	96	50.355	MGP_SPRETEiJ_G0019220	Tdp2	73	50.355	Mus_spretus
ENSMZEG00005004126	tdp2b	91	49.254	ENSMPUG00000004516	TDP2	76	50.365	Mustela_putorius_furo
ENSMZEG00005004126	tdp2b	95	47.079	ENSMLUG00000013506	TDP2	77	47.079	Myotis_lucifugus
ENSMZEG00005004126	tdp2b	84	50.202	ENSNGAG00000001375	Tdp2	66	50.607	Nannospalax_galili
ENSMZEG00005004126	tdp2b	97	47.682	ENSNLEG00000002447	TDP2	96	47.682	Nomascus_leucogenys
ENSMZEG00005004126	tdp2b	91	49.813	ENSOPRG00000016299	TDP2	78	49.635	Ochotona_princeps
ENSMZEG00005004126	tdp2b	95	47.423	ENSODEG00000014018	TDP2	98	47.423	Octodon_degus
ENSMZEG00005004126	tdp2b	91	48.315	ENSOCUG00000013773	TDP2	77	46.786	Oryctolagus_cuniculus
ENSMZEG00005004126	tdp2b	92	58.736	ENSORLG00000001661	-	99	58.736	Oryzias_latipes
ENSMZEG00005004126	tdp2b	92	58.736	ENSORLG00020004634	-	99	58.736	Oryzias_latipes_hni
ENSMZEG00005004126	tdp2b	91	50.187	ENSORLG00015008190	-	100	50.000	Oryzias_latipes_hsok
ENSMZEG00005004126	tdp2b	90	57.736	ENSOMEG00000015899	-	93	58.333	Oryzias_melastigma
ENSMZEG00005004126	tdp2b	99	47.440	ENSOGAG00000025303	TDP2	79	47.440	Otolemur_garnettii
ENSMZEG00005004126	tdp2b	95	48.936	ENSPPAG00000029023	TDP2	98	47.826	Pan_paniscus
ENSMZEG00005004126	tdp2b	99	46.552	ENSPPRG00000015398	TDP2	80	46.552	Panthera_pardus
ENSMZEG00005004126	tdp2b	92	47.955	ENSPTIG00000018574	TDP2	93	48.905	Panthera_tigris_altaica
ENSMZEG00005004126	tdp2b	95	48.936	ENSPTRG00000017778	TDP2	98	47.492	Pan_troglodytes
ENSMZEG00005004126	tdp2b	99	48.464	ENSPANG00000017590	TDP2	98	47.826	Papio_anubis
ENSMZEG00005004126	tdp2b	94	62.857	ENSPKIG00000006483	tdp2b	76	62.857	Paramormyrops_kingsleyae
ENSMZEG00005004126	tdp2b	93	50.730	ENSPSIG00000004948	TDP2	94	50.730	Pelodiscus_sinensis
ENSMZEG00005004126	tdp2b	91	49.640	ENSPEMG00000001788	Tdp2	74	49.640	Peromyscus_maniculatus_bairdii
ENSMZEG00005004126	tdp2b	87	41.791	ENSPMAG00000001570	tdp2b	97	42.164	Petromyzon_marinus
ENSMZEG00005004126	tdp2b	86	51.383	ENSPCIG00000007316	TDP2	66	51.779	Phascolarctos_cinereus
ENSMZEG00005004126	tdp2b	91	54.851	ENSPFOG00000017990	-	97	54.647	Poecilia_formosa
ENSMZEG00005004126	tdp2b	90	55.303	ENSPLAG00000019439	-	84	55.303	Poecilia_latipinna
ENSMZEG00005004126	tdp2b	92	55.390	ENSPMEG00000010824	-	93	53.957	Poecilia_mexicana
ENSMZEG00005004126	tdp2b	95	49.291	ENSPPYG00000016282	TDP2	71	49.291	Pongo_abelii
ENSMZEG00005004126	tdp2b	99	47.782	ENSPCOG00000021415	TDP2	96	49.097	Propithecus_coquereli
ENSMZEG00005004126	tdp2b	99	75.421	ENSPNYG00000011532	tdp2b	82	75.421	Pundamilia_nyererei
ENSMZEG00005004126	tdp2b	62	93.923	ENSPNYG00000001944	-	74	94.350	Pundamilia_nyererei
ENSMZEG00005004126	tdp2b	92	76.761	ENSPNYG00000011504	tdp2b	93	76.761	Pundamilia_nyererei
ENSMZEG00005004126	tdp2b	94	52.431	ENSPNAG00000022162	tdp2a	69	52.431	Pygocentrus_nattereri
ENSMZEG00005004126	tdp2b	99	46.735	ENSRNOG00000018246	Tdp2	77	46.735	Rattus_norvegicus
ENSMZEG00005004126	tdp2b	99	47.782	ENSRBIG00000037119	TDP2	98	47.492	Rhinopithecus_bieti
ENSMZEG00005004126	tdp2b	95	48.936	ENSRROG00000005025	TDP2	98	47.826	Rhinopithecus_roxellana
ENSMZEG00005004126	tdp2b	99	48.123	ENSSBOG00000028734	TDP2	94	49.129	Saimiri_boliviensis_boliviensis
ENSMZEG00005004126	tdp2b	86	52.569	ENSSHAG00000002506	TDP2	67	52.756	Sarcophilus_harrisii
ENSMZEG00005004126	tdp2b	93	52.756	ENSSFOG00015011322	-	72	52.756	Scleropages_formosus
ENSMZEG00005004126	tdp2b	93	46.209	ENSSARG00000013547	TDP2	99	46.209	Sorex_araneus
ENSMZEG00005004126	tdp2b	94	45.329	ENSSPUG00000008288	TDP2	78	45.329	Sphenodon_punctatus
ENSMZEG00005004126	tdp2b	99	46.713	ENSSSCG00000001092	TDP2	80	46.207	Sus_scrofa
ENSMZEG00005004126	tdp2b	87	52.941	ENSTGUG00000009035	TDP2	98	52.529	Taeniopygia_guttata
ENSMZEG00005004126	tdp2b	92	70.896	ENSTRUG00000014347	tdp2b	74	70.896	Takifugu_rubripes
ENSMZEG00005004126	tdp2b	93	57.455	ENSTRUG00000012218	-	96	57.455	Takifugu_rubripes
ENSMZEG00005004126	tdp2b	88	62.069	ENSTNIG00000010260	TDP2	99	62.069	Tetraodon_nigroviridis
ENSMZEG00005004126	tdp2b	96	71.071	ENSTNIG00000017792	tdp2b	76	71.071	Tetraodon_nigroviridis
ENSMZEG00005004126	tdp2b	86	51.779	ENSTTRG00000016376	TDP2	80	47.440	Tursiops_truncatus
ENSMZEG00005004126	tdp2b	91	49.286	ENSUAMG00000025939	TDP2	80	49.286	Ursus_americanus
ENSMZEG00005004126	tdp2b	91	49.064	ENSUMAG00000020111	TDP2	91	50.000	Ursus_maritimus
ENSMZEG00005004126	tdp2b	99	50.000	ENSXETG00000014826	tdp2	76	50.000	Xenopus_tropicalis
ENSMZEG00005004126	tdp2b	95	54.545	ENSXCOG00000010778	-	79	54.545	Xiphophorus_couchianus
ENSMZEG00005004126	tdp2b	85	59.200	ENSXMAG00000022252	-	72	59.200	Xiphophorus_maculatus