EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005004915 (Gene tree)
Gene ID: 101486646
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 33643 bases
Position: chrLG2:14192248-14225890
Accession: 101486646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005006356	RNA_pol_Rpb1_5	PF04998.17	7.5e-100	1	1
ENSMZEP00005006356	RNA_pol_Rpb1_4	PF05000.17	1.1e-20	1	1
ENSMZEP00005006356	RNA_pol_Rpb1_2	PF00623.20	1.4e-67	1	1
ENSMZEP00005006356	RNA_pol_Rpb1_3	PF04983.18	5.4e-37	1	1
ENSMZEP00005006356	RNA_pol_Rpb1_1	PF04997.12	4.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005006645	-	6150	XM_024804210	ENSMZEP00005006356	1685 (aa)	XP_024659978	UPI000D323747

Gene Model

Click here to download ENSMZEG00005004915's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005004915's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005004915	polr1a	100	65.665	ENSG00000068654	POLR1A	100	65.933	Homo_sapiens
ENSMZEG00005004915	polr1a	69	88.416	ENSAPOG00000017945	polr1a	99	88.416	Acanthochromis_polyacanthus
ENSMZEG00005004915	polr1a	100	65.972	ENSAMEG00000005807	POLR1A	100	69.113	Ailuropoda_melanoleuca
ENSMZEG00005004915	polr1a	100	84.970	ENSACIG00000022147	polr1a	100	85.038	Amphilophus_citrinellus
ENSMZEG00005004915	polr1a	100	86.466	ENSAOCG00000017336	polr1a	100	88.029	Amphiprion_ocellaris
ENSMZEG00005004915	polr1a	100	86.466	ENSAPEG00000016105	polr1a	100	87.064	Amphiprion_percula
ENSMZEG00005004915	polr1a	100	87.108	ENSATEG00000016773	polr1a	100	87.167	Anabas_testudineus
ENSMZEG00005004915	polr1a	85	67.323	ENSAPLG00000013871	POLR1A	99	67.573	Anas_platyrhynchos
ENSMZEG00005004915	polr1a	99	65.038	ENSACAG00000012141	POLR1A	99	64.921	Anolis_carolinensis
ENSMZEG00005004915	polr1a	100	64.835	ENSANAG00000033927	POLR1A	100	65.547	Aotus_nancymaae
ENSMZEG00005004915	polr1a	100	89.775	ENSACLG00000020541	polr1a	100	89.775	Astatotilapia_calliptera
ENSMZEG00005004915	polr1a	100	66.029	ENSBTAG00000006481	POLR1A	100	66.029	Bos_taurus
ENSMZEG00005004915	polr1a	99	38.588	WBGene00012999	rpoa-1	98	38.785	Caenorhabditis_elegans
ENSMZEG00005004915	polr1a	100	65.104	ENSCJAG00000019547	POLR1A	100	65.605	Callithrix_jacchus
ENSMZEG00005004915	polr1a	100	66.067	ENSCAFG00000007613	POLR1A	100	66.183	Canis_familiaris
ENSMZEG00005004915	polr1a	100	66.529	ENSCAFG00020014752	POLR1A	100	66.088	Canis_lupus_dingo
ENSMZEG00005004915	polr1a	100	66.027	ENSCHIG00000018204	POLR1A	100	65.734	Capra_hircus
ENSMZEG00005004915	polr1a	100	65.180	ENSTSYG00000002761	POLR1A	100	65.389	Carlito_syrichta
ENSMZEG00005004915	polr1a	97	62.493	ENSCAPG00000010132	POLR1A	100	63.063	Cavia_aperea
ENSMZEG00005004915	polr1a	100	65.661	ENSCPOG00000012350	POLR1A	100	66.337	Cavia_porcellus
ENSMZEG00005004915	polr1a	100	65.356	ENSCCAG00000019839	POLR1A	100	65.721	Cebus_capucinus
ENSMZEG00005004915	polr1a	100	65.683	ENSCATG00000029786	POLR1A	100	65.933	Cercocebus_atys
ENSMZEG00005004915	polr1a	100	65.152	ENSCLAG00000005187	POLR1A	100	65.975	Chinchilla_lanigera
ENSMZEG00005004915	polr1a	100	65.394	ENSCSAG00000016251	POLR1A	100	65.187	Chlorocebus_sabaeus
ENSMZEG00005004915	polr1a	99	66.550	ENSCPBG00000001115	POLR1A	99	66.725	Chrysemys_picta_bellii
ENSMZEG00005004915	polr1a	99	47.300	ENSCSAVG00000007184	-	99	47.045	Ciona_savignyi
ENSMZEG00005004915	polr1a	100	62.984	ENSCANG00000031785	POLR1A	100	62.773	Colobus_angolensis_palliatus
ENSMZEG00005004915	polr1a	96	66.088	ENSCGRG00001006651	Polr1a	100	66.088	Cricetulus_griseus_chok1gshd
ENSMZEG00005004915	polr1a	60	63.619	ENSCGRG00000010834	Polr1a	100	63.811	Cricetulus_griseus_crigri
ENSMZEG00005004915	polr1a	100	77.869	ENSCSEG00000020190	polr1a	100	78.105	Cynoglossus_semilaevis
ENSMZEG00005004915	polr1a	100	81.294	ENSCVAG00000020941	polr1a	100	81.588	Cyprinodon_variegatus
ENSMZEG00005004915	polr1a	100	72.743	ENSDARG00000098375	polr1a	100	72.567	Danio_rerio
ENSMZEG00005004915	polr1a	100	63.014	ENSDNOG00000010829	POLR1A	100	63.072	Dasypus_novemcinctus
ENSMZEG00005004915	polr1a	100	65.145	ENSDORG00000008298	Polr1a	100	64.855	Dipodomys_ordii
ENSMZEG00005004915	polr1a	79	44.610	FBgn0019938	RpI1	99	43.314	Drosophila_melanogaster
ENSMZEG00005004915	polr1a	72	87.500	ENSETEG00000000412	-	72	87.500	Echinops_telfairi
ENSMZEG00005004915	polr1a	89	46.746	ENSEBUG00000005667	-	99	46.824	Eptatretus_burgeri
ENSMZEG00005004915	polr1a	100	65.453	ENSEASG00005001625	POLR1A	100	66.242	Equus_asinus_asinus
ENSMZEG00005004915	polr1a	100	65.569	ENSECAG00000030510	-	99	69.979	Equus_caballus
ENSMZEG00005004915	polr1a	100	65.569	ENSECAG00000036306	-	99	69.979	Equus_caballus
ENSMZEG00005004915	polr1a	100	65.569	ENSECAG00000010092	POLR1A	99	69.979	Equus_caballus
ENSMZEG00005004915	polr1a	85	76.975	ENSEEUG00000000676	POLR1A	84	76.975	Erinaceus_europaeus
ENSMZEG00005004915	polr1a	100	74.356	ENSELUG00000012769	polr1a	99	74.649	Esox_lucius
ENSMZEG00005004915	polr1a	100	65.356	ENSFCAG00000008966	POLR1A	100	66.125	Felis_catus
ENSMZEG00005004915	polr1a	99	65.258	ENSFALG00000010082	POLR1A	99	65.924	Ficedula_albicollis
ENSMZEG00005004915	polr1a	100	65.295	ENSFDAG00000013726	POLR1A	100	65.875	Fukomys_damarensis
ENSMZEG00005004915	polr1a	100	78.901	ENSFHEG00000005996	polr1a	100	78.593	Fundulus_heteroclitus
ENSMZEG00005004915	polr1a	100	69.258	ENSGMOG00000002230	polr1a	100	69.444	Gadus_morhua
ENSMZEG00005004915	polr1a	89	63.630	ENSGALG00000038160	-	99	63.777	Gallus_gallus
ENSMZEG00005004915	polr1a	100	81.217	ENSGAFG00000015266	polr1a	100	81.630	Gambusia_affinis
ENSMZEG00005004915	polr1a	100	80.544	ENSGACG00000018791	polr1a	100	80.660	Gasterosteus_aculeatus
ENSMZEG00005004915	polr1a	89	67.874	ENSGAGG00000004984	-	95	72.215	Gopherus_agassizii
ENSMZEG00005004915	polr1a	100	65.723	ENSGGOG00000001788	POLR1A	100	65.991	Gorilla_gorilla
ENSMZEG00005004915	polr1a	90	98.936	ENSHBUG00000020021	polr1a	100	98.936	Haplochromis_burtoni
ENSMZEG00005004915	polr1a	100	66.299	ENSHGLG00000006334	POLR1A	100	66.280	Heterocephalus_glaber_female
ENSMZEG00005004915	polr1a	100	66.067	ENSHGLG00100006614	POLR1A	100	66.049	Heterocephalus_glaber_male
ENSMZEG00005004915	polr1a	100	77.214	ENSHCOG00000003345	polr1a	100	76.900	Hippocampus_comes
ENSMZEG00005004915	polr1a	100	71.495	ENSIPUG00000013174	polr1a	100	71.512	Ictalurus_punctatus
ENSMZEG00005004915	polr1a	99	65.558	ENSSTOG00000012580	POLR1A	100	65.159	Ictidomys_tridecemlineatus
ENSMZEG00005004915	polr1a	100	65.933	ENSJJAG00000013113	Polr1a	100	65.630	Jaculus_jaculus
ENSMZEG00005004915	polr1a	100	85.130	ENSKMAG00000007399	polr1a	100	85.130	Kryptolebias_marmoratus
ENSMZEG00005004915	polr1a	94	86.093	ENSLBEG00000015401	polr1a	99	86.523	Labrus_bergylta
ENSMZEG00005004915	polr1a	53	70.499	ENSLACG00000003218	polr1a	100	70.499	Latimeria_chalumnae
ENSMZEG00005004915	polr1a	100	71.528	ENSLOCG00000010881	polr1a	100	71.138	Lepisosteus_oculatus
ENSMZEG00005004915	polr1a	100	65.719	ENSLAFG00000014948	POLR1A	100	66.050	Loxodonta_africana
ENSMZEG00005004915	polr1a	100	65.394	ENSMFAG00000046097	POLR1A	100	65.875	Macaca_fascicularis
ENSMZEG00005004915	polr1a	100	65.394	ENSMMUG00000015815	POLR1A	100	65.875	Macaca_mulatta
ENSMZEG00005004915	polr1a	100	65.394	ENSMNEG00000043313	POLR1A	100	65.875	Macaca_nemestrina
ENSMZEG00005004915	polr1a	100	65.046	ENSMLEG00000042428	POLR1A	100	65.527	Mandrillus_leucophaeus
ENSMZEG00005004915	polr1a	100	85.892	ENSMAMG00000016565	polr1a	100	85.892	Mastacembelus_armatus
ENSMZEG00005004915	polr1a	99	63.326	ENSMGAG00000013111	POLR1A	99	63.252	Meleagris_gallopavo
ENSMZEG00005004915	polr1a	91	65.127	ENSMAUG00000008497	Polr1a	100	64.861	Mesocricetus_auratus
ENSMZEG00005004915	polr1a	100	65.396	ENSMICG00000000757	POLR1A	100	65.585	Microcebus_murinus
ENSMZEG00005004915	polr1a	100	65.565	ENSMOCG00000000122	Polr1a	100	65.338	Microtus_ochrogaster
ENSMZEG00005004915	polr1a	100	80.896	ENSMMOG00000010216	polr1a	100	80.706	Mola_mola
ENSMZEG00005004915	polr1a	100	61.921	ENSMODG00000009335	POLR1A	100	62.207	Monodelphis_domestica
ENSMZEG00005004915	polr1a	100	85.015	ENSMALG00000013363	polr1a	100	85.841	Monopterus_albus
ENSMZEG00005004915	polr1a	100	64.965	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.757	Mus_caroli
ENSMZEG00005004915	polr1a	100	64.907	ENSMUSG00000049553	Polr1a	100	64.682	Mus_musculus
ENSMZEG00005004915	polr1a	100	64.818	MGP_PahariEiJ_G0022230	Polr1a	100	65.338	Mus_pahari
ENSMZEG00005004915	polr1a	100	63.394	MGP_SPRETEiJ_G0029499	Polr1a	100	63.879	Mus_spretus
ENSMZEG00005004915	polr1a	100	65.529	ENSMPUG00000009135	POLR1A	100	65.951	Mustela_putorius_furo
ENSMZEG00005004915	polr1a	100	65.648	ENSMLUG00000015723	POLR1A	100	65.994	Myotis_lucifugus
ENSMZEG00005004915	polr1a	100	65.663	ENSNGAG00000017907	Polr1a	100	65.478	Nannospalax_galili
ENSMZEG00005004915	polr1a	100	99.347	ENSNBRG00000000519	polr1a	100	99.347	Neolamprologus_brichardi
ENSMZEG00005004915	polr1a	100	64.018	ENSNLEG00000002264	POLR1A	100	64.245	Nomascus_leucogenys
ENSMZEG00005004915	polr1a	76	81.102	ENSMEUG00000011665	-	75	81.102	Notamacropus_eugenii
ENSMZEG00005004915	polr1a	99	60.898	ENSOPRG00000008269	POLR1A	100	61.134	Ochotona_princeps
ENSMZEG00005004915	polr1a	100	66.049	ENSODEG00000003542	POLR1A	100	66.299	Octodon_degus
ENSMZEG00005004915	polr1a	100	97.057	ENSONIG00000015895	polr1a	100	97.057	Oreochromis_niloticus
ENSMZEG00005004915	polr1a	100	65.495	ENSOCUG00000010138	POLR1A	100	66.570	Oryctolagus_cuniculus
ENSMZEG00005004915	polr1a	100	82.130	ENSORLG00000008753	polr1a	99	82.367	Oryzias_latipes
ENSMZEG00005004915	polr1a	100	79.137	ENSORLG00020020726	polr1a	99	79.314	Oryzias_latipes_hni
ENSMZEG00005004915	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSMZEG00005004915	polr1a	100	65.489	ENSOGAG00000004031	POLR1A	100	65.547	Otolemur_garnettii
ENSMZEG00005004915	polr1a	100	65.272	ENSOARG00000020601	POLR1A	100	66.474	Ovis_aries
ENSMZEG00005004915	polr1a	100	65.434	ENSPPAG00000042450	POLR1A	100	65.701	Pan_paniscus
ENSMZEG00005004915	polr1a	100	65.529	ENSPPRG00000006702	POLR1A	100	66.241	Panthera_pardus
ENSMZEG00005004915	polr1a	100	65.072	ENSPTIG00000018783	POLR1A	100	65.780	Panthera_tigris_altaica
ENSMZEG00005004915	polr1a	100	65.605	ENSPTRG00000012147	POLR1A	100	65.759	Pan_troglodytes
ENSMZEG00005004915	polr1a	100	65.509	ENSPANG00000025908	POLR1A	100	65.759	Papio_anubis
ENSMZEG00005004915	polr1a	100	71.630	ENSPKIG00000005468	polr1a	98	75.000	Paramormyrops_kingsleyae
ENSMZEG00005004915	polr1a	63	65.530	ENSPSIG00000009321	-	99	66.047	Pelodiscus_sinensis
ENSMZEG00005004915	polr1a	55	82.340	ENSPMGG00000009718	polr1a	95	82.340	Periophthalmus_magnuspinnatus
ENSMZEG00005004915	polr1a	100	65.205	ENSPEMG00000022224	Polr1a	100	65.112	Peromyscus_maniculatus_bairdii
ENSMZEG00005004915	polr1a	95	64.530	ENSPCIG00000004222	POLR1A	99	64.338	Phascolarctos_cinereus
ENSMZEG00005004915	polr1a	100	81.888	ENSPFOG00000005025	polr1a	100	82.529	Poecilia_formosa
ENSMZEG00005004915	polr1a	100	82.301	ENSPLAG00000021389	polr1a	100	82.675	Poecilia_latipinna
ENSMZEG00005004915	polr1a	100	78.978	ENSPMEG00000006463	polr1a	100	79.695	Poecilia_mexicana
ENSMZEG00005004915	polr1a	100	82.027	ENSPREG00000002389	polr1a	100	82.294	Poecilia_reticulata
ENSMZEG00005004915	polr1a	100	65.491	ENSPPYG00000012217	POLR1A	100	65.721	Pongo_abelii
ENSMZEG00005004915	polr1a	91	64.915	ENSPCAG00000011582	POLR1A	95	55.993	Procavia_capensis
ENSMZEG00005004915	polr1a	100	65.569	ENSPCOG00000026987	POLR1A	100	65.701	Propithecus_coquereli
ENSMZEG00005004915	polr1a	95	65.568	ENSPVAG00000012674	POLR1A	95	65.760	Pteropus_vampyrus
ENSMZEG00005004915	polr1a	100	99.703	ENSPNYG00000000026	polr1a	100	99.703	Pundamilia_nyererei
ENSMZEG00005004915	polr1a	100	72.063	ENSPNAG00000019223	polr1a	100	72.238	Pygocentrus_nattereri
ENSMZEG00005004915	polr1a	100	65.159	ENSRNOG00000009545	Polr1a	100	65.719	Rattus_norvegicus
ENSMZEG00005004915	polr1a	100	65.336	ENSRBIG00000028335	POLR1A	100	65.167	Rhinopithecus_bieti
ENSMZEG00005004915	polr1a	100	65.336	ENSRROG00000031473	POLR1A	100	65.167	Rhinopithecus_roxellana
ENSMZEG00005004915	polr1a	99	36.214	YOR341W	RPA190	99	36.048	Saccharomyces_cerevisiae
ENSMZEG00005004915	polr1a	100	65.104	ENSSBOG00000030262	POLR1A	100	65.779	Saimiri_boliviensis_boliviensis
ENSMZEG00005004915	polr1a	100	60.276	ENSSHAG00000014739	POLR1A	100	60.299	Sarcophilus_harrisii
ENSMZEG00005004915	polr1a	100	70.970	ENSSFOG00015019716	polr1a	100	71.278	Scleropages_formosus
ENSMZEG00005004915	polr1a	100	85.200	ENSSMAG00000014342	polr1a	100	85.807	Scophthalmus_maximus
ENSMZEG00005004915	polr1a	100	88.121	ENSSDUG00000014631	polr1a	100	88.239	Seriola_dumerili
ENSMZEG00005004915	polr1a	100	84.217	ENSSLDG00000024095	polr1a	100	84.335	Seriola_lalandi_dorsalis
ENSMZEG00005004915	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSMZEG00005004915	polr1a	95	72.500	ENSSPUG00000004215	POLR1A	99	72.500	Sphenodon_punctatus
ENSMZEG00005004915	polr1a	66	89.103	ENSSPAG00000016341	polr1a	96	89.103	Stegastes_partitus
ENSMZEG00005004915	polr1a	83	66.783	ENSSSCG00000008226	POLR1A	99	66.690	Sus_scrofa
ENSMZEG00005004915	polr1a	99	64.744	ENSTGUG00000010704	POLR1A	100	64.862	Taeniopygia_guttata
ENSMZEG00005004915	polr1a	100	79.280	ENSTRUG00000002210	polr1a	99	79.280	Takifugu_rubripes
ENSMZEG00005004915	polr1a	100	73.077	ENSTNIG00000010116	polr1a	100	73.019	Tetraodon_nigroviridis
ENSMZEG00005004915	polr1a	73	82.743	ENSTBEG00000008646	POLR1A	74	82.743	Tupaia_belangeri
ENSMZEG00005004915	polr1a	100	63.589	ENSTTRG00000008597	POLR1A	100	63.647	Tursiops_truncatus
ENSMZEG00005004915	polr1a	69	66.076	ENSUAMG00000012158	-	94	67.062	Ursus_americanus
ENSMZEG00005004915	polr1a	100	65.304	ENSUMAG00000006700	POLR1A	97	68.936	Ursus_maritimus
ENSMZEG00005004915	polr1a	100	65.951	ENSVVUG00000001245	POLR1A	100	66.067	Vulpes_vulpes
ENSMZEG00005004915	polr1a	100	62.731	ENSXETG00000001952	polr1a	99	64.221	Xenopus_tropicalis
ENSMZEG00005004915	polr1a	100	82.540	ENSXMAG00000004032	polr1a	100	82.540	Xiphophorus_maculatus