EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005005281 (Gene tree)
Gene ID: 101478906
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 16781 bases
Position: chrAGTA05000027.1:829487-846267
Accession: 101478906
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005006916	ResIII	PF04851.15	4e-10	1	1
ENSMZEP00005006884	ResIII	PF04851.15	4.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005007219	-	2487	-	ENSMZEP00005006916	828 (aa)	-	-
ENSMZET00005007186	-	5526	XM_004541366	ENSMZEP00005006884	928 (aa)	XP_004541423	UPI0003296FBE

Gene Model

Click here to download ENSMZEG00005005281's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005005281's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005005281	rad54b	87	57.866	ENSG00000265817	FSBP	99	58.060	Homo_sapiens
ENSMZEG00005005281	rad54b	95	58.386	ENSG00000197275	RAD54B	99	53.419	Homo_sapiens
ENSMZEG00005005281	rad54b	95	59.395	ENSAMEG00000005834	-	99	54.158	Ailuropoda_melanoleuca
ENSMZEG00005005281	rad54b	95	93.409	ENSACIG00000013005	rad54b	95	93.308	Amphilophus_citrinellus
ENSMZEG00005005281	rad54b	100	85.531	ENSAOCG00000008523	rad54b	100	85.638	Amphiprion_ocellaris
ENSMZEG00005005281	rad54b	96	83.499	ENSAPEG00000001673	rad54b	100	77.005	Amphiprion_percula
ENSMZEG00005005281	rad54b	100	83.940	ENSATEG00000001527	rad54b	100	84.154	Anabas_testudineus
ENSMZEG00005005281	rad54b	97	61.179	ENSAPLG00000014366	-	99	56.915	Anas_platyrhynchos
ENSMZEG00005005281	rad54b	95	60.025	ENSACAG00000003671	-	98	60.025	Anolis_carolinensis
ENSMZEG00005005281	rad54b	77	60.124	ENSANAG00000019528	-	99	60.124	Aotus_nancymaae
ENSMZEG00005005281	rad54b	96	99.750	ENSACLG00000007826	rad54b	99	99.379	Astatotilapia_calliptera
ENSMZEG00005005281	rad54b	94	69.309	ENSAMXG00000039985	rad54b	94	68.892	Astyanax_mexicanus
ENSMZEG00005005281	rad54b	95	59.975	ENSBTAG00000000632	RAD54B	99	54.545	Bos_taurus
ENSMZEG00005005281	rad54b	86	35.510	WBGene00013792	Y116A8C.13	97	33.877	Caenorhabditis_elegans
ENSMZEG00005005281	rad54b	96	58.509	ENSCJAG00000000080	-	99	58.219	Callithrix_jacchus
ENSMZEG00005005281	rad54b	95	60.076	ENSCAFG00000009179	RAD54B	99	54.633	Canis_familiaris
ENSMZEG00005005281	rad54b	95	60.076	ENSCAFG00020012084	-	99	54.633	Canis_lupus_dingo
ENSMZEG00005005281	rad54b	95	60.101	ENSCHIG00000008230	-	99	54.770	Capra_hircus
ENSMZEG00005005281	rad54b	95	59.647	ENSTSYG00000013234	-	99	54.225	Carlito_syrichta
ENSMZEG00005005281	rad54b	95	60.252	ENSCPOG00000011643	-	99	54.915	Cavia_porcellus
ENSMZEG00005005281	rad54b	96	58.672	ENSCCAG00000011754	-	99	58.130	Cebus_capucinus
ENSMZEG00005005281	rad54b	95	59.039	ENSCATG00000030661	-	99	58.573	Cercocebus_atys
ENSMZEG00005005281	rad54b	97	58.171	ENSCLAG00000010476	-	99	54.545	Chinchilla_lanigera
ENSMZEG00005005281	rad54b	95	59.039	ENSCSAG00000012712	-	99	53.640	Chlorocebus_sabaeus
ENSMZEG00005005281	rad54b	99	60.864	ENSCPBG00000003204	-	98	58.121	Chrysemys_picta_bellii
ENSMZEG00005005281	rad54b	95	59.292	ENSCANG00000017939	-	99	58.711	Colobus_angolensis_palliatus
ENSMZEG00005005281	rad54b	95	58.386	ENSCGRG00001020184	Rad54b	99	52.784	Cricetulus_griseus_chok1gshd
ENSMZEG00005005281	rad54b	95	57.377	ENSCGRG00000016752	Rad54b	99	51.599	Cricetulus_griseus_crigri
ENSMZEG00005005281	rad54b	98	80.626	ENSCSEG00000001601	rad54b	99	80.432	Cynoglossus_semilaevis
ENSMZEG00005005281	rad54b	97	84.663	ENSCVAG00000009200	rad54b	100	77.849	Cyprinodon_variegatus
ENSMZEG00005005281	rad54b	97	67.284	ENSDARG00000092134	rad54b	99	69.797	Danio_rerio
ENSMZEG00005005281	rad54b	95	59.873	ENSDNOG00000015535	-	99	54.594	Dasypus_novemcinctus
ENSMZEG00005005281	rad54b	95	59.422	ENSDORG00000002492	Rad54b	99	54.749	Dipodomys_ordii
ENSMZEG00005005281	rad54b	81	62.556	ENSETEG00000010605	-	100	55.800	Echinops_telfairi
ENSMZEG00005005281	rad54b	99	46.941	ENSEBUG00000009104	rad54b	98	46.934	Eptatretus_burgeri
ENSMZEG00005005281	rad54b	95	59.497	ENSEASG00005004021	-	89	59.524	Equus_asinus_asinus
ENSMZEG00005005281	rad54b	95	59.874	ENSECAG00000021949	-	99	54.207	Equus_caballus
ENSMZEG00005005281	rad54b	79	54.375	ENSEEUG00000008056	-	72	54.375	Erinaceus_europaeus
ENSMZEG00005005281	rad54b	95	79.140	ENSELUG00000009287	rad54b	100	72.187	Esox_lucius
ENSMZEG00005005281	rad54b	95	59.698	ENSFCAG00000015513	-	99	59.290	Felis_catus
ENSMZEG00005005281	rad54b	99	56.642	ENSFALG00000005467	-	99	56.642	Ficedula_albicollis
ENSMZEG00005005281	rad54b	95	59.446	ENSFDAG00000020541	-	100	54.313	Fukomys_damarensis
ENSMZEG00005005281	rad54b	96	82.896	ENSFHEG00000014382	rad54b	91	81.620	Fundulus_heteroclitus
ENSMZEG00005005281	rad54b	95	81.944	ENSGMOG00000014774	rad54b	99	81.944	Gadus_morhua
ENSMZEG00005005281	rad54b	97	60.654	ENSGALG00000043597	RAD54B	99	56.237	Gallus_gallus
ENSMZEG00005005281	rad54b	99	83.535	ENSGAFG00000007901	rad54b	99	82.892	Gambusia_affinis
ENSMZEG00005005281	rad54b	97	85.167	ENSGACG00000009128	rad54b	99	78.762	Gasterosteus_aculeatus
ENSMZEG00005005281	rad54b	99	60.890	ENSGAGG00000018747	-	99	57.188	Gopherus_agassizii
ENSMZEG00005005281	rad54b	95	58.690	ENSGGOG00000023516	-	99	53.583	Gorilla_gorilla
ENSMZEG00005005281	rad54b	100	99.569	ENSHBUG00000016017	rad54b	99	99.569	Haplochromis_burtoni
ENSMZEG00005005281	rad54b	95	59.375	ENSHGLG00000008263	RAD54B	99	54.237	Heterocephalus_glaber_female
ENSMZEG00005005281	rad54b	95	58.561	ENSHGLG00100008108	-	99	53.579	Heterocephalus_glaber_male
ENSMZEG00005005281	rad54b	97	78.731	ENSHCOG00000004764	rad54b	98	76.617	Hippocampus_comes
ENSMZEG00005005281	rad54b	94	68.640	ENSIPUG00000018531	rad54b	99	62.552	Ictalurus_punctatus
ENSMZEG00005005281	rad54b	95	58.460	ENSSTOG00000010791	-	99	53.276	Ictidomys_tridecemlineatus
ENSMZEG00005005281	rad54b	95	59.596	ENSJJAG00000010314	Rad54b	99	53.814	Jaculus_jaculus
ENSMZEG00005005281	rad54b	94	84.635	ENSKMAG00000004744	rad54b	96	80.695	Kryptolebias_marmoratus
ENSMZEG00005005281	rad54b	90	63.867	ENSLACG00000000859	-	100	64.267	Latimeria_chalumnae
ENSMZEG00005005281	rad54b	97	68.098	ENSLOCG00000010100	rad54b	94	69.288	Lepisosteus_oculatus
ENSMZEG00005005281	rad54b	95	57.125	ENSLAFG00000015315	-	97	57.431	Loxodonta_africana
ENSMZEG00005005281	rad54b	95	59.039	ENSMFAG00000031629	-	99	58.573	Macaca_fascicularis
ENSMZEG00005005281	rad54b	95	59.039	ENSMMUG00000005659	-	99	53.640	Macaca_mulatta
ENSMZEG00005005281	rad54b	95	58.913	ENSMNEG00000016408	-	99	53.739	Macaca_nemestrina
ENSMZEG00005005281	rad54b	95	59.039	ENSMLEG00000006946	-	99	53.640	Mandrillus_leucophaeus
ENSMZEG00005005281	rad54b	99	83.575	ENSMAMG00000012269	rad54b	94	83.575	Mastacembelus_armatus
ENSMZEG00005005281	rad54b	97	60.442	ENSMGAG00000012024	-	99	56.090	Meleagris_gallopavo
ENSMZEG00005005281	rad54b	95	58.207	ENSMAUG00000013586	Rad54b	99	52.412	Mesocricetus_auratus
ENSMZEG00005005281	rad54b	95	59.395	ENSMICG00000000754	-	90	59.395	Microcebus_murinus
ENSMZEG00005005281	rad54b	95	58.913	ENSMOCG00000020035	Rad54b	99	52.840	Microtus_ochrogaster
ENSMZEG00005005281	rad54b	97	85.679	ENSMMOG00000003394	rad54b	92	85.450	Mola_mola
ENSMZEG00005005281	rad54b	95	58.764	ENSMODG00000007343	-	97	58.816	Monodelphis_domestica
ENSMZEG00005005281	rad54b	77	86.520	ENSMALG00000001520	rad54b	100	86.916	Monopterus_albus
ENSMZEG00005005281	rad54b	97	58.242	MGP_CAROLIEiJ_G0025810	Rad54b	99	53.936	Mus_caroli
ENSMZEG00005005281	rad54b	97	57.385	ENSMUSG00000078773	Rad54b	99	53.066	Mus_musculus
ENSMZEG00005005281	rad54b	97	58.242	MGP_PahariEiJ_G0023933	Rad54b	99	54.207	Mus_pahari
ENSMZEG00005005281	rad54b	97	57.990	MGP_SPRETEiJ_G0026758	Rad54b	99	53.439	Mus_spretus
ENSMZEG00005005281	rad54b	95	58.890	ENSMPUG00000008878	-	97	59.194	Mustela_putorius_furo
ENSMZEG00005005281	rad54b	95	59.824	ENSMLUG00000008953	-	99	54.322	Myotis_lucifugus
ENSMZEG00005005281	rad54b	95	58.573	ENSNGAG00000017537	Rad54b	99	53.109	Nannospalax_galili
ENSMZEG00005005281	rad54b	96	99.125	ENSNBRG00000013394	rad54b	99	98.758	Neolamprologus_brichardi
ENSMZEG00005005281	rad54b	95	58.312	ENSNLEG00000003062	-	99	57.981	Nomascus_leucogenys
ENSMZEG00005005281	rad54b	76	61.381	ENSMEUG00000012426	-	69	61.381	Notamacropus_eugenii
ENSMZEG00005005281	rad54b	87	75.000	ENSODEG00000002650	-	93	73.913	Octodon_degus
ENSMZEG00005005281	rad54b	95	59.899	ENSODEG00000019564	-	99	54.818	Octodon_degus
ENSMZEG00005005281	rad54b	100	97.522	ENSONIG00000006067	rad54b	100	97.522	Oreochromis_niloticus
ENSMZEG00005005281	rad54b	90	59.420	ENSOANG00000011348	-	99	59.552	Ornithorhynchus_anatinus
ENSMZEG00005005281	rad54b	95	59.023	ENSOCUG00000016478	-	99	53.945	Oryctolagus_cuniculus
ENSMZEG00005005281	rad54b	99	84.121	ENSORLG00000008918	rad54b	100	87.752	Oryzias_latipes
ENSMZEG00005005281	rad54b	77	87.442	ENSORLG00020012171	rad54b	100	87.597	Oryzias_latipes_hni
ENSMZEG00005005281	rad54b	96	85.056	ENSORLG00015018536	rad54b	100	80.720	Oryzias_latipes_hsok
ENSMZEG00005005281	rad54b	93	86.346	ENSOMEG00000004345	rad54b	100	86.346	Oryzias_melastigma
ENSMZEG00005005281	rad54b	95	57.576	ENSOGAG00000007854	-	99	52.721	Otolemur_garnettii
ENSMZEG00005005281	rad54b	95	60.000	ENSOARG00000007691	-	97	60.025	Ovis_aries
ENSMZEG00005005281	rad54b	95	57.431	ENSPPAG00000029572	-	99	52.401	Pan_paniscus
ENSMZEG00005005281	rad54b	95	59.698	ENSPPRG00000007571	-	99	59.290	Panthera_pardus
ENSMZEG00005005281	rad54b	87	59.426	ENSPTIG00000012670	-	99	59.426	Panthera_tigris_altaica
ENSMZEG00005005281	rad54b	95	58.564	ENSPTRG00000020427	-	99	58.254	Pan_troglodytes
ENSMZEG00005005281	rad54b	95	59.039	ENSPANG00000019566	-	99	53.640	Papio_anubis
ENSMZEG00005005281	rad54b	96	69.098	ENSPKIG00000014974	rad54b	99	64.468	Paramormyrops_kingsleyae
ENSMZEG00005005281	rad54b	95	61.258	ENSPSIG00000002383	-	96	61.307	Pelodiscus_sinensis
ENSMZEG00005005281	rad54b	95	58.816	ENSPEMG00000012133	Rad54b	99	52.972	Peromyscus_maniculatus_bairdii
ENSMZEG00005005281	rad54b	94	58.786	ENSPMAG00000002916	rad54b	98	58.861	Petromyzon_marinus
ENSMZEG00005005281	rad54b	95	58.890	ENSPCIG00000020151	-	92	58.786	Phascolarctos_cinereus
ENSMZEG00005005281	rad54b	95	86.582	ENSPFOG00000023411	rad54b	99	81.818	Poecilia_formosa
ENSMZEG00005005281	rad54b	95	86.456	ENSPLAG00000010430	rad54b	99	81.604	Poecilia_latipinna
ENSMZEG00005005281	rad54b	96	85.590	ENSPMEG00000016873	rad54b	99	83.944	Poecilia_mexicana
ENSMZEG00005005281	rad54b	96	85.590	ENSPREG00000018443	rad54b	99	84.531	Poecilia_reticulata
ENSMZEG00005005281	rad54b	95	58.564	ENSPPYG00000018750	-	99	53.476	Pongo_abelii
ENSMZEG00005005281	rad54b	95	59.245	ENSPCOG00000026845	-	99	58.470	Propithecus_coquereli
ENSMZEG00005005281	rad54b	89	57.810	ENSPVAG00000000261	-	86	57.810	Pteropus_vampyrus
ENSMZEG00005005281	rad54b	96	95.734	ENSPNYG00000018303	rad54b	97	95.734	Pundamilia_nyererei
ENSMZEG00005005281	rad54b	94	68.979	ENSPNAG00000000295	rad54b	99	63.685	Pygocentrus_nattereri
ENSMZEG00005005281	rad54b	95	59.142	ENSRNOG00000039949	Rad54b	99	53.830	Rattus_norvegicus
ENSMZEG00005005281	rad54b	95	58.786	ENSRBIG00000020419	-	99	53.319	Rhinopithecus_bieti
ENSMZEG00005005281	rad54b	95	58.786	ENSRROG00000039897	-	99	53.426	Rhinopithecus_roxellana
ENSMZEG00005005281	rad54b	87	36.948	YBR073W	RDH54	79	37.056	Saccharomyces_cerevisiae
ENSMZEG00005005281	rad54b	97	58.416	ENSSBOG00000028501	-	99	53.583	Saimiri_boliviensis_boliviensis
ENSMZEG00005005281	rad54b	95	59.647	ENSSHAG00000017038	-	99	54.352	Sarcophilus_harrisii
ENSMZEG00005005281	rad54b	68	71.605	ENSSFOG00015008483	rad54b	89	71.655	Scleropages_formosus
ENSMZEG00005005281	rad54b	95	87.247	ENSSMAG00000018659	rad54b	98	85.106	Scophthalmus_maximus
ENSMZEG00005005281	rad54b	97	85.011	ENSSDUG00000001122	rad54b	96	85.011	Seriola_dumerili
ENSMZEG00005005281	rad54b	98	87.975	ENSSLDG00000013787	rad54b	100	85.275	Seriola_lalandi_dorsalis
ENSMZEG00005005281	rad54b	96	61.070	ENSSPUG00000016497	-	99	56.150	Sphenodon_punctatus
ENSMZEG00005005281	rad54b	97	88.300	ENSSPAG00000012800	rad54b	100	82.131	Stegastes_partitus
ENSMZEG00005005281	rad54b	95	59.217	ENSSSCG00000006101	-	98	59.217	Sus_scrofa
ENSMZEG00005005281	rad54b	94	61.839	ENSTGUG00000011880	-	99	56.416	Taeniopygia_guttata
ENSMZEG00005005281	rad54b	97	83.251	ENSTRUG00000010015	rad54b	99	78.814	Takifugu_rubripes
ENSMZEG00005005281	rad54b	95	55.051	ENSTTRG00000006312	-	99	50.425	Tursiops_truncatus
ENSMZEG00005005281	rad54b	95	59.698	ENSUMAG00000016401	-	99	54.516	Ursus_maritimus
ENSMZEG00005005281	rad54b	95	60.025	ENSVPAG00000003157	-	99	54.652	Vicugna_pacos
ENSMZEG00005005281	rad54b	95	52.956	ENSXETG00000025924	rad54b	98	52.889	Xenopus_tropicalis
ENSMZEG00005005281	rad54b	99	83.212	ENSXMAG00000013141	rad54b	98	84.672	Xiphophorus_maculatus