EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005005317 (Gene tree)
Gene ID: 101485343
Gene Symbol: rbck1
Alias: zgc:91964
Full Name: RANBP2-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 10445 bases
Position: chrLG5:30973863-30984307
Accession: 101485343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005006901	zf-RanBP	PF00641.18	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005007205	-	5571	XM_004547641	ENSMZEP00005006901	519 (aa)	XP_004547698	UPI0003297CAD

Gene Model

Click here to download ENSMZEG00005005317's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze04217	Necroptosis	KEGG
mze04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005005317's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005005317	rbck1	100	99.807	ENSACLG00000020380	rbck1	100	99.807	Astatotilapia_calliptera
ENSMZEG00005005317	rbck1	98	58.641	ENSAMXG00000004941	rbck1	98	58.687	Astyanax_mexicanus
ENSMZEG00005005317	rbck1	100	76.923	ENSCVAG00000002649	rbck1	100	76.923	Cyprinodon_variegatus
ENSMZEG00005005317	rbck1	98	64.078	ENSELUG00000022786	rbck1	96	63.883	Esox_lucius
ENSMZEG00005005317	rbck1	100	78.269	ENSFHEG00000016918	rbck1	100	77.885	Fundulus_heteroclitus
ENSMZEG00005005317	rbck1	100	99.615	ENSHBUG00000008208	rbck1	100	99.615	Haplochromis_burtoni
ENSMZEG00005005317	rbck1	84	96.330	ENSNBRG00000006179	rbck1	91	96.330	Neolamprologus_brichardi
ENSMZEG00005005317	rbck1	98	96.647	ENSONIG00000006803	rbck1	99	96.647	Oreochromis_niloticus
ENSMZEG00005005317	rbck1	99	98.249	ENSPNYG00000012666	rbck1	99	98.249	Pundamilia_nyererei
ENSMZEG00005005317	rbck1	100	81.714	ENSSDUG00000023631	rbck1	100	81.939	Seriola_dumerili
ENSMZEG00005005317	rbck1	100	81.679	ENSSLDG00000008305	rbck1	100	81.179	Seriola_lalandi_dorsalis
ENSMZEG00005005317	rbck1	99	81.382	ENSSPAG00000009432	rbck1	100	81.071	Stegastes_partitus