EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005005654 (Gene tree)
Gene ID: 101464639
Gene Symbol: EDC3 (1 of many)
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 21630 bases
Position: chrLG1:7511727-7533356
Accession: 101464639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005007379	FDF	PF09532.10	1e-07	1	1
ENSMZEP00005007379	LSM14	PF12701.7	3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005007690	EDC3 (1 of many)-201	1440	XM_004539730	ENSMZEP00005007379	479 (aa)	XP_004539787	-

Gene Model

Click here to download ENSMZEG00005005654's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005005654's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005005654	EDC3	99	58.594	ENSG00000179151	EDC3	100	77.778	Homo_sapiens
ENSMZEG00005005654	EDC3	99	72.764	ENSAPOG00000008655	EDC3	99	72.764	Acanthochromis_polyacanthus
ENSMZEG00005005654	EDC3	100	66.735	ENSAPOG00000010791	edc3	100	66.735	Acanthochromis_polyacanthus
ENSMZEG00005005654	EDC3	100	58.285	ENSAMEG00000008963	EDC3	100	58.285	Ailuropoda_melanoleuca
ENSMZEG00005005654	EDC3	100	89.940	ENSACIG00000005330	EDC3	100	89.940	Amphilophus_citrinellus
ENSMZEG00005005654	EDC3	100	65.102	ENSACIG00000017751	edc3	100	65.102	Amphilophus_citrinellus
ENSMZEG00005005654	EDC3	100	66.531	ENSAOCG00000005431	edc3	100	66.531	Amphiprion_ocellaris
ENSMZEG00005005654	EDC3	99	78.661	ENSAOCG00000009103	-	99	78.661	Amphiprion_ocellaris
ENSMZEG00005005654	EDC3	99	78.661	ENSAPEG00000007841	EDC3	99	78.661	Amphiprion_percula
ENSMZEG00005005654	EDC3	100	66.531	ENSAPEG00000000968	edc3	100	66.531	Amphiprion_percula
ENSMZEG00005005654	EDC3	99	77.035	ENSATEG00000004205	-	99	77.035	Anabas_testudineus
ENSMZEG00005005654	EDC3	100	65.918	ENSATEG00000015505	edc3	100	65.918	Anabas_testudineus
ENSMZEG00005005654	EDC3	73	70.286	ENSAPLG00000008957	EDC3	76	70.286	Anas_platyrhynchos
ENSMZEG00005005654	EDC3	77	54.750	ENSACAG00000000460	-	100	54.750	Anolis_carolinensis
ENSMZEG00005005654	EDC3	99	59.180	ENSANAG00000024078	EDC3	99	59.180	Aotus_nancymaae
ENSMZEG00005005654	EDC3	99	65.440	ENSACLG00000007232	edc3	99	65.440	Astatotilapia_calliptera
ENSMZEG00005005654	EDC3	100	97.495	ENSACLG00000018776	-	100	97.495	Astatotilapia_calliptera
ENSMZEG00005005654	EDC3	100	64.637	ENSAMXG00000001589	edc3	100	64.637	Astyanax_mexicanus
ENSMZEG00005005654	EDC3	99	58.984	ENSBTAG00000007308	EDC3	99	58.984	Bos_taurus
ENSMZEG00005005654	EDC3	99	59.180	ENSCJAG00000017681	EDC3	99	59.180	Callithrix_jacchus
ENSMZEG00005005654	EDC3	99	58.789	ENSCAFG00000017935	EDC3	100	58.674	Canis_familiaris
ENSMZEG00005005654	EDC3	99	58.789	ENSCAFG00020003909	EDC3	100	58.674	Canis_lupus_dingo
ENSMZEG00005005654	EDC3	99	58.789	ENSCHIG00000023658	EDC3	99	58.789	Capra_hircus
ENSMZEG00005005654	EDC3	99	58.789	ENSTSYG00000004822	EDC3	99	58.789	Carlito_syrichta
ENSMZEG00005005654	EDC3	99	58.984	ENSCPOG00000015595	EDC3	99	58.984	Cavia_porcellus
ENSMZEG00005005654	EDC3	99	58.984	ENSCCAG00000021663	EDC3	99	58.984	Cebus_capucinus
ENSMZEG00005005654	EDC3	99	59.375	ENSCATG00000037511	EDC3	99	58.789	Cercocebus_atys
ENSMZEG00005005654	EDC3	99	58.594	ENSCLAG00000005700	EDC3	99	58.594	Chinchilla_lanigera
ENSMZEG00005005654	EDC3	99	59.375	ENSCSAG00000014239	EDC3	99	58.789	Chlorocebus_sabaeus
ENSMZEG00005005654	EDC3	99	58.984	ENSCPBG00000024239	EDC3	99	58.984	Chrysemys_picta_bellii
ENSMZEG00005005654	EDC3	99	36.149	ENSCING00000022142	-	99	36.149	Ciona_intestinalis
ENSMZEG00005005654	EDC3	99	59.375	ENSCANG00000028699	EDC3	99	58.789	Colobus_angolensis_palliatus
ENSMZEG00005005654	EDC3	99	58.203	ENSCGRG00001013874	Edc3	99	58.203	Cricetulus_griseus_chok1gshd
ENSMZEG00005005654	EDC3	99	58.203	ENSCGRG00000011885	Edc3	99	58.203	Cricetulus_griseus_crigri
ENSMZEG00005005654	EDC3	99	66.667	ENSCSEG00000012996	edc3	99	66.667	Cynoglossus_semilaevis
ENSMZEG00005005654	EDC3	100	65.092	ENSCVAG00000008023	edc3	100	65.092	Cyprinodon_variegatus
ENSMZEG00005005654	EDC3	99	62.868	ENSDARG00000051931	edc3	99	62.868	Danio_rerio
ENSMZEG00005005654	EDC3	99	52.000	ENSDNOG00000030661	EDC3	99	52.000	Dasypus_novemcinctus
ENSMZEG00005005654	EDC3	69	77.778	ENSETEG00000002398	-	64	77.778	Echinops_telfairi
ENSMZEG00005005654	EDC3	99	58.984	ENSEASG00005005071	EDC3	99	58.984	Equus_asinus_asinus
ENSMZEG00005005654	EDC3	99	58.984	ENSECAG00000017994	EDC3	99	58.984	Equus_caballus
ENSMZEG00005005654	EDC3	100	67.288	ENSELUG00000007607	EDC3	100	67.288	Esox_lucius
ENSMZEG00005005654	EDC3	100	63.934	ENSELUG00000005794	edc3	100	63.934	Esox_lucius
ENSMZEG00005005654	EDC3	100	58.480	ENSFCAG00000002014	EDC3	100	58.480	Felis_catus
ENSMZEG00005005654	EDC3	98	57.769	ENSFALG00000004543	EDC3	96	57.769	Ficedula_albicollis
ENSMZEG00005005654	EDC3	100	59.649	ENSFDAG00000012582	EDC3	99	59.766	Fukomys_damarensis
ENSMZEG00005005654	EDC3	100	64.887	ENSFHEG00000009375	edc3	100	64.887	Fundulus_heteroclitus
ENSMZEG00005005654	EDC3	100	66.122	ENSGMOG00000002715	edc3	100	66.122	Gadus_morhua
ENSMZEG00005005654	EDC3	99	60.078	ENSGALG00000040181	EDC3	99	60.078	Gallus_gallus
ENSMZEG00005005654	EDC3	100	64.344	ENSGAFG00000014433	edc3	100	64.344	Gambusia_affinis
ENSMZEG00005005654	EDC3	100	64.082	ENSGACG00000009783	edc3	99	64.213	Gasterosteus_aculeatus
ENSMZEG00005005654	EDC3	99	65.769	ENSGACG00000014671	EDC3	99	67.059	Gasterosteus_aculeatus
ENSMZEG00005005654	EDC3	99	59.608	ENSGAGG00000023477	EDC3	99	59.608	Gopherus_agassizii
ENSMZEG00005005654	EDC3	99	58.594	ENSGGOG00000003552	EDC3	99	58.594	Gorilla_gorilla
ENSMZEG00005005654	EDC3	99	65.440	ENSHBUG00000003635	edc3	99	65.440	Haplochromis_burtoni
ENSMZEG00005005654	EDC3	100	97.704	ENSHBUG00000020817	EDC3	100	97.704	Haplochromis_burtoni
ENSMZEG00005005654	EDC3	99	64.938	ENSHCOG00000016834	edc3	100	64.803	Hippocampus_comes
ENSMZEG00005005654	EDC3	99	63.618	ENSIPUG00000005695	edc3	100	63.618	Ictalurus_punctatus
ENSMZEG00005005654	EDC3	99	59.180	ENSSTOG00000013936	EDC3	99	59.180	Ictidomys_tridecemlineatus
ENSMZEG00005005654	EDC3	99	58.984	ENSJJAG00000008074	Edc3	99	58.984	Jaculus_jaculus
ENSMZEG00005005654	EDC3	100	64.549	ENSKMAG00000001243	edc3	100	64.754	Kryptolebias_marmoratus
ENSMZEG00005005654	EDC3	99	74.895	ENSKMAG00000001987	EDC3	99	74.895	Kryptolebias_marmoratus
ENSMZEG00005005654	EDC3	100	73.859	ENSLBEG00000017984	EDC3	100	73.859	Labrus_bergylta
ENSMZEG00005005654	EDC3	100	64.403	ENSLBEG00000013435	edc3	99	64.417	Labrus_bergylta
ENSMZEG00005005654	EDC3	99	60.735	ENSLACG00000014149	EDC3	99	60.735	Latimeria_chalumnae
ENSMZEG00005005654	EDC3	99	58.871	ENSLOCG00000014625	edc3	100	58.743	Lepisosteus_oculatus
ENSMZEG00005005654	EDC3	100	58.285	ENSLAFG00000002992	EDC3	100	58.285	Loxodonta_africana
ENSMZEG00005005654	EDC3	99	59.180	ENSMFAG00000043074	EDC3	99	58.594	Macaca_fascicularis
ENSMZEG00005005654	EDC3	99	59.180	ENSMMUG00000011071	EDC3	99	58.594	Macaca_mulatta
ENSMZEG00005005654	EDC3	99	59.180	ENSMNEG00000035316	EDC3	99	58.594	Macaca_nemestrina
ENSMZEG00005005654	EDC3	99	59.375	ENSMLEG00000030372	EDC3	99	58.789	Mandrillus_leucophaeus
ENSMZEG00005005654	EDC3	99	77.197	ENSMAMG00000005423	-	99	77.197	Mastacembelus_armatus
ENSMZEG00005005654	EDC3	100	64.694	ENSMAMG00000000505	edc3	100	64.694	Mastacembelus_armatus
ENSMZEG00005005654	EDC3	99	65.235	ENSMZEG00005004892	edc3	99	65.235	Maylandia_zebra
ENSMZEG00005005654	EDC3	99	60.196	ENSMGAG00000002617	EDC3	99	60.196	Meleagris_gallopavo
ENSMZEG00005005654	EDC3	99	58.789	ENSMICG00000043190	EDC3	99	58.789	Microcebus_murinus
ENSMZEG00005005654	EDC3	99	58.008	ENSMOCG00000016205	Edc3	99	58.008	Microtus_ochrogaster
ENSMZEG00005005654	EDC3	99	65.849	ENSMMOG00000012278	edc3	99	65.849	Mola_mola
ENSMZEG00005005654	EDC3	99	58.984	ENSMODG00000009442	EDC3	99	58.984	Monodelphis_domestica
ENSMZEG00005005654	EDC3	100	65.984	ENSMALG00000008658	edc3	100	65.984	Monopterus_albus
ENSMZEG00005005654	EDC3	99	58.398	MGP_CAROLIEiJ_G0032280	Edc3	100	72.308	Mus_caroli
ENSMZEG00005005654	EDC3	99	59.180	ENSMUSG00000038957	Edc3	100	72.308	Mus_musculus
ENSMZEG00005005654	EDC3	99	59.180	MGP_PahariEiJ_G0015146	Edc3	100	72.308	Mus_pahari
ENSMZEG00005005654	EDC3	99	58.789	MGP_SPRETEiJ_G0033420	Edc3	100	72.308	Mus_spretus
ENSMZEG00005005654	EDC3	100	58.674	ENSMPUG00000017293	EDC3	100	58.674	Mustela_putorius_furo
ENSMZEG00005005654	EDC3	99	59.144	ENSMLUG00000016382	EDC3	99	59.144	Myotis_lucifugus
ENSMZEG00005005654	EDC3	99	58.869	ENSNGAG00000010923	Edc3	99	58.869	Nannospalax_galili
ENSMZEG00005005654	EDC3	100	64.694	ENSNBRG00000002434	edc3	100	64.694	Neolamprologus_brichardi
ENSMZEG00005005654	EDC3	100	98.960	ENSNBRG00000007881	EDC3	100	98.960	Neolamprologus_brichardi
ENSMZEG00005005654	EDC3	99	51.172	ENSNLEG00000014577	EDC3	99	51.172	Nomascus_leucogenys
ENSMZEG00005005654	EDC3	99	59.804	ENSMEUG00000009077	EDC3	99	59.804	Notamacropus_eugenii
ENSMZEG00005005654	EDC3	84	75.926	ENSOPRG00000009540	-	78	75.926	Ochotona_princeps
ENSMZEG00005005654	EDC3	100	88.911	ENSONIG00000002932	-	100	88.911	Oreochromis_niloticus
ENSMZEG00005005654	EDC3	100	65.306	ENSONIG00000008434	edc3	100	65.306	Oreochromis_niloticus
ENSMZEG00005005654	EDC3	77	54.863	ENSOCUG00000017740	EDC3	86	54.863	Oryctolagus_cuniculus
ENSMZEG00005005654	EDC3	100	64.213	ENSORLG00000004883	edc3	100	64.213	Oryzias_latipes
ENSMZEG00005005654	EDC3	99	75.314	ENSORLG00000014399	-	98	75.314	Oryzias_latipes
ENSMZEG00005005654	EDC3	100	64.139	ENSORLG00020012262	edc3	100	64.139	Oryzias_latipes_hni
ENSMZEG00005005654	EDC3	99	75.314	ENSORLG00020019446	-	99	75.314	Oryzias_latipes_hni
ENSMZEG00005005654	EDC3	100	64.139	ENSORLG00015005634	edc3	100	64.139	Oryzias_latipes_hsok
ENSMZEG00005005654	EDC3	99	74.895	ENSORLG00015017635	-	95	74.895	Oryzias_latipes_hsok
ENSMZEG00005005654	EDC3	100	64.754	ENSOMEG00000014026	edc3	100	64.754	Oryzias_melastigma
ENSMZEG00005005654	EDC3	99	75.105	ENSOMEG00000017354	EDC3	99	75.105	Oryzias_melastigma
ENSMZEG00005005654	EDC3	99	59.570	ENSOGAG00000014441	EDC3	100	58.674	Otolemur_garnettii
ENSMZEG00005005654	EDC3	99	57.895	ENSOARG00000003476	EDC3	99	58.869	Ovis_aries
ENSMZEG00005005654	EDC3	99	58.594	ENSPPAG00000040143	EDC3	99	58.594	Pan_paniscus
ENSMZEG00005005654	EDC3	100	58.480	ENSPPRG00000006257	EDC3	100	58.480	Panthera_pardus
ENSMZEG00005005654	EDC3	100	58.480	ENSPTIG00000017424	EDC3	100	58.480	Panthera_tigris_altaica
ENSMZEG00005005654	EDC3	99	58.594	ENSPTRG00000007279	EDC3	99	58.594	Pan_troglodytes
ENSMZEG00005005654	EDC3	99	59.375	ENSPANG00000015997	EDC3	99	58.789	Papio_anubis
ENSMZEG00005005654	EDC3	99	62.874	ENSPKIG00000019810	EDC3	99	63.273	Paramormyrops_kingsleyae
ENSMZEG00005005654	EDC3	99	62.598	ENSPKIG00000004416	edc3	99	62.598	Paramormyrops_kingsleyae
ENSMZEG00005005654	EDC3	99	55.166	ENSPSIG00000008474	EDC3	99	56.140	Pelodiscus_sinensis
ENSMZEG00005005654	EDC3	100	63.934	ENSPMGG00000007223	edc3	100	63.934	Periophthalmus_magnuspinnatus
ENSMZEG00005005654	EDC3	99	58.789	ENSPEMG00000015260	Edc3	99	58.789	Peromyscus_maniculatus_bairdii
ENSMZEG00005005654	EDC3	99	59.020	ENSPCIG00000006276	EDC3	70	59.020	Phascolarctos_cinereus
ENSMZEG00005005654	EDC3	100	64.887	ENSPFOG00000012204	edc3	100	64.887	Poecilia_formosa
ENSMZEG00005005654	EDC3	100	64.887	ENSPLAG00000014420	edc3	100	64.887	Poecilia_latipinna
ENSMZEG00005005654	EDC3	100	64.887	ENSPMEG00000023289	edc3	100	64.887	Poecilia_mexicana
ENSMZEG00005005654	EDC3	100	64.887	ENSPREG00000016022	edc3	100	64.887	Poecilia_reticulata
ENSMZEG00005005654	EDC3	100	57.505	ENSPPYG00000006642	EDC3	100	57.505	Pongo_abelii
ENSMZEG00005005654	EDC3	84	77.778	ENSPCAG00000002802	EDC3	78	77.778	Procavia_capensis
ENSMZEG00005005654	EDC3	100	58.674	ENSPCOG00000013364	EDC3	99	58.789	Propithecus_coquereli
ENSMZEG00005005654	EDC3	99	58.835	ENSPVAG00000014733	EDC3	99	58.789	Pteropus_vampyrus
ENSMZEG00005005654	EDC3	100	97.704	ENSPNYG00000009669	EDC3	100	97.704	Pundamilia_nyererei
ENSMZEG00005005654	EDC3	99	65.440	ENSPNYG00000021797	edc3	99	65.440	Pundamilia_nyererei
ENSMZEG00005005654	EDC3	100	63.261	ENSPNAG00000019657	edc3	100	63.261	Pygocentrus_nattereri
ENSMZEG00005005654	EDC3	99	58.546	ENSRNOG00000019579	Edc3	99	58.153	Rattus_norvegicus
ENSMZEG00005005654	EDC3	99	58.789	ENSRBIG00000019488	EDC3	99	58.789	Rhinopithecus_bieti
ENSMZEG00005005654	EDC3	99	58.789	ENSRROG00000034959	EDC3	99	58.789	Rhinopithecus_roxellana
ENSMZEG00005005654	EDC3	99	58.984	ENSSBOG00000004896	EDC3	99	58.984	Saimiri_boliviensis_boliviensis
ENSMZEG00005005654	EDC3	96	57.520	ENSSHAG00000015075	EDC3	95	57.520	Sarcophilus_harrisii
ENSMZEG00005005654	EDC3	99	65.538	ENSSFOG00015016939	edc3	99	65.415	Scleropages_formosus
ENSMZEG00005005654	EDC3	99	66.806	ENSSFOG00015002439	edc3	100	67.775	Scleropages_formosus
ENSMZEG00005005654	EDC3	99	74.686	ENSSMAG00000010176	-	99	74.686	Scophthalmus_maximus
ENSMZEG00005005654	EDC3	99	65.440	ENSSMAG00000010695	edc3	99	65.440	Scophthalmus_maximus
ENSMZEG00005005654	EDC3	99	78.870	ENSSDUG00000007671	EDC3	99	78.870	Seriola_dumerili
ENSMZEG00005005654	EDC3	100	65.714	ENSSDUG00000021844	edc3	100	65.714	Seriola_dumerili
ENSMZEG00005005654	EDC3	100	65.714	ENSSLDG00000022046	edc3	100	65.714	Seriola_lalandi_dorsalis
ENSMZEG00005005654	EDC3	76	75.304	ENSSARG00000003907	EDC3	72	75.304	Sorex_araneus
ENSMZEG00005005654	EDC3	99	58.984	ENSSPUG00000008232	EDC3	99	58.984	Sphenodon_punctatus
ENSMZEG00005005654	EDC3	99	79.707	ENSSPAG00000020327	EDC3	99	79.707	Stegastes_partitus
ENSMZEG00005005654	EDC3	100	65.510	ENSSPAG00000010009	edc3	100	65.510	Stegastes_partitus
ENSMZEG00005005654	EDC3	99	62.083	ENSSSCG00000001903	EDC3	99	62.083	Sus_scrofa
ENSMZEG00005005654	EDC3	99	60.000	ENSTGUG00000004007	EDC3	99	60.000	Taeniopygia_guttata
ENSMZEG00005005654	EDC3	100	66.530	ENSTRUG00000017078	edc3	100	66.530	Takifugu_rubripes
ENSMZEG00005005654	EDC3	100	65.854	ENSTNIG00000016047	edc3	100	65.854	Tetraodon_nigroviridis
ENSMZEG00005005654	EDC3	99	58.627	ENSTTRG00000007990	EDC3	99	58.627	Tursiops_truncatus
ENSMZEG00005005654	EDC3	100	58.285	ENSUAMG00000026710	-	100	58.285	Ursus_americanus
ENSMZEG00005005654	EDC3	100	58.285	ENSUMAG00000005006	EDC3	96	58.285	Ursus_maritimus
ENSMZEG00005005654	EDC3	84	70.370	ENSVPAG00000003499	-	78	70.370	Vicugna_pacos
ENSMZEG00005005654	EDC3	100	58.480	ENSVVUG00000018601	EDC3	100	58.480	Vulpes_vulpes
ENSMZEG00005005654	EDC3	73	65.625	ENSXETG00000010622	edc3	100	65.449	Xenopus_tropicalis
ENSMZEG00005005654	EDC3	100	64.959	ENSXMAG00000007377	edc3	100	64.959	Xiphophorus_maculatus