EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005005681 (Gene tree)
Gene ID: 101481730
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 177824 bases
Position: chrLG17:22991740-23169563
Accession: 101481730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005007454	TUDOR	PF00567.24	4e-28	1	1
ENSMZEP00005007475	TUDOR	PF00567.24	4.6e-28	1	1
ENSMZEP00005007454	SNase	PF00565.17	1.4e-64	1	4
ENSMZEP00005007454	SNase	PF00565.17	1.4e-64	2	4
ENSMZEP00005007454	SNase	PF00565.17	1.4e-64	3	4
ENSMZEP00005007454	SNase	PF00565.17	1.4e-64	4	4
ENSMZEP00005007475	SNase	PF00565.17	4.9e-59	1	4
ENSMZEP00005007475	SNase	PF00565.17	4.9e-59	2	4
ENSMZEP00005007475	SNase	PF00565.17	4.9e-59	3	4
ENSMZEP00005007475	SNase	PF00565.17	4.9e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005007786	-	4241	XM_024805616	ENSMZEP00005007475	895 (aa)	XP_024661384	-
ENSMZET00005007765	-	4286	XM_014409598	ENSMZEP00005007454	910 (aa)	XP_014265084	UPI0006CEE485

Gene Model

Click here to download ENSMZEG00005005681's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005005681's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005005681	snd1	99	83.964	ENSG00000197157	SND1	99	82.967	Homo_sapiens
ENSMZEG00005005681	snd1	100	95.060	ENSAPOG00000017599	snd1	100	95.060	Acanthochromis_polyacanthus
ENSMZEG00005005681	snd1	100	83.151	ENSAMEG00000004664	SND1	94	83.151	Ailuropoda_melanoleuca
ENSMZEG00005005681	snd1	100	92.645	ENSACIG00000003551	snd1	100	92.645	Amphilophus_citrinellus
ENSMZEG00005005681	snd1	100	95.060	ENSAOCG00000014166	snd1	100	95.060	Amphiprion_ocellaris
ENSMZEG00005005681	snd1	100	94.841	ENSAPEG00000007067	snd1	100	94.841	Amphiprion_percula
ENSMZEG00005005681	snd1	98	94.527	ENSATEG00000018475	snd1	89	94.407	Anabas_testudineus
ENSMZEG00005005681	snd1	99	84.076	ENSANAG00000034463	SND1	99	84.312	Aotus_nancymaae
ENSMZEG00005005681	snd1	100	100.000	ENSACLG00000022897	snd1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005005681	snd1	99	90.220	ENSAMXG00000016318	snd1	99	90.220	Astyanax_mexicanus
ENSMZEG00005005681	snd1	99	84.298	ENSBTAG00000010692	SND1	99	83.297	Bos_taurus
ENSMZEG00005005681	snd1	99	46.595	WBGene00006626	tsn-1	99	47.065	Caenorhabditis_elegans
ENSMZEG00005005681	snd1	99	83.853	ENSCJAG00000017668	SND1	99	84.086	Callithrix_jacchus
ENSMZEG00005005681	snd1	100	83.443	ENSCAFG00000001700	SND1	100	83.443	Canis_familiaris
ENSMZEG00005005681	snd1	100	83.443	ENSCAFG00020021639	SND1	100	83.443	Canis_lupus_dingo
ENSMZEG00005005681	snd1	99	84.187	ENSCHIG00000023390	SND1	98	84.424	Capra_hircus
ENSMZEG00005005681	snd1	71	86.667	ENSTSYG00000004979	SND1	96	86.667	Carlito_syrichta
ENSMZEG00005005681	snd1	98	73.192	ENSCAPG00000010677	SND1	98	73.192	Cavia_aperea
ENSMZEG00005005681	snd1	99	83.964	ENSCPOG00000006251	SND1	99	82.967	Cavia_porcellus
ENSMZEG00005005681	snd1	99	84.076	ENSCCAG00000036847	SND1	98	84.312	Cebus_capucinus
ENSMZEG00005005681	snd1	99	84.187	ENSCATG00000035214	SND1	99	84.424	Cercocebus_atys
ENSMZEG00005005681	snd1	99	84.187	ENSCLAG00000011796	SND1	100	83.333	Chinchilla_lanigera
ENSMZEG00005005681	snd1	99	84.187	ENSCSAG00000010182	SND1	99	83.187	Chlorocebus_sabaeus
ENSMZEG00005005681	snd1	79	76.471	ENSCHOG00000002218	SND1	86	76.471	Choloepus_hoffmanni
ENSMZEG00005005681	snd1	100	83.644	ENSCPBG00000018094	SND1	100	83.644	Chrysemys_picta_bellii
ENSMZEG00005005681	snd1	98	57.475	ENSCING00000000524	-	99	56.895	Ciona_intestinalis
ENSMZEG00005005681	snd1	99	57.393	ENSCSAVG00000008807	-	99	57.393	Ciona_savignyi
ENSMZEG00005005681	snd1	99	84.187	ENSCANG00000035119	SND1	99	83.187	Colobus_angolensis_palliatus
ENSMZEG00005005681	snd1	99	83.853	ENSCGRG00001022514	Snd1	100	83.114	Cricetulus_griseus_chok1gshd
ENSMZEG00005005681	snd1	97	84.086	ENSCGRG00000012277	Snd1	99	84.086	Cricetulus_griseus_crigri
ENSMZEG00005005681	snd1	100	92.536	ENSCSEG00000008661	snd1	100	92.536	Cynoglossus_semilaevis
ENSMZEG00005005681	snd1	100	94.182	ENSCVAG00000010316	snd1	100	94.182	Cyprinodon_variegatus
ENSMZEG00005005681	snd1	100	89.595	ENSDARG00000006766	snd1	99	91.182	Danio_rerio
ENSMZEG00005005681	snd1	97	82.340	ENSDNOG00000006795	SND1	100	82.340	Dasypus_novemcinctus
ENSMZEG00005005681	snd1	99	83.964	ENSDORG00000000336	Snd1	99	82.967	Dipodomys_ordii
ENSMZEG00005005681	snd1	99	50.862	FBgn0035121	Tudor-SN	99	50.532	Drosophila_melanogaster
ENSMZEG00005005681	snd1	90	95.238	ENSETEG00000000375	SND1	91	95.238	Echinops_telfairi
ENSMZEG00005005681	snd1	69	64.921	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSMZEG00005005681	snd1	99	82.804	ENSEASG00005008513	SND1	99	81.838	Equus_asinus_asinus
ENSMZEG00005005681	snd1	99	83.964	ENSECAG00000011451	SND1	99	82.967	Equus_caballus
ENSMZEG00005005681	snd1	99	74.610	ENSEEUG00000014737	SND1	99	73.846	Erinaceus_europaeus
ENSMZEG00005005681	snd1	99	88.462	ENSELUG00000001805	snd1	96	88.462	Esox_lucius
ENSMZEG00005005681	snd1	100	83.333	ENSFCAG00000008289	SND1	100	83.333	Felis_catus
ENSMZEG00005005681	snd1	98	83.929	ENSFDAG00000015881	SND1	100	82.895	Fukomys_damarensis
ENSMZEG00005005681	snd1	98	94.400	ENSFHEG00000004093	snd1	99	94.400	Fundulus_heteroclitus
ENSMZEG00005005681	snd1	75	85.028	ENSGMOG00000018932	snd1	66	85.028	Gadus_morhua
ENSMZEG00005005681	snd1	100	94.731	ENSGAFG00000008421	snd1	100	94.731	Gambusia_affinis
ENSMZEG00005005681	snd1	100	60.412	ENSGACG00000019793	snd1	100	60.412	Gasterosteus_aculeatus
ENSMZEG00005005681	snd1	99	84.187	ENSGGOG00000009614	SND1	99	84.424	Gorilla_gorilla
ENSMZEG00005005681	snd1	100	99.670	ENSHBUG00000019135	snd1	100	99.670	Haplochromis_burtoni
ENSMZEG00005005681	snd1	99	83.853	ENSHGLG00000003618	SND1	99	82.857	Heterocephalus_glaber_female
ENSMZEG00005005681	snd1	99	83.187	ENSHGLG00100012449	SND1	99	83.187	Heterocephalus_glaber_male
ENSMZEG00005005681	snd1	100	92.316	ENSHCOG00000005266	snd1	100	92.316	Hippocampus_comes
ENSMZEG00005005681	snd1	99	88.584	ENSIPUG00000013279	snd1	99	88.584	Ictalurus_punctatus
ENSMZEG00005005681	snd1	99	84.187	ENSSTOG00000002140	SND1	99	83.187	Ictidomys_tridecemlineatus
ENSMZEG00005005681	snd1	99	84.076	ENSJJAG00000009561	Snd1	99	83.077	Jaculus_jaculus
ENSMZEG00005005681	snd1	100	94.292	ENSKMAG00000016997	snd1	100	94.292	Kryptolebias_marmoratus
ENSMZEG00005005681	snd1	100	93.304	ENSLBEG00000013563	snd1	100	93.304	Labrus_bergylta
ENSMZEG00005005681	snd1	98	88.717	ENSLOCG00000015537	snd1	99	87.813	Lepisosteus_oculatus
ENSMZEG00005005681	snd1	99	83.516	ENSLAFG00000009696	SND1	99	83.516	Loxodonta_africana
ENSMZEG00005005681	snd1	99	84.187	ENSMFAG00000038114	SND1	99	84.424	Macaca_fascicularis
ENSMZEG00005005681	snd1	99	84.187	ENSMMUG00000015432	SND1	99	83.187	Macaca_mulatta
ENSMZEG00005005681	snd1	99	84.187	ENSMNEG00000039808	SND1	100	84.442	Macaca_nemestrina
ENSMZEG00005005681	snd1	99	84.076	ENSMLEG00000029040	SND1	100	84.329	Mandrillus_leucophaeus
ENSMZEG00005005681	snd1	100	95.060	ENSMAMG00000011739	snd1	100	95.060	Mastacembelus_armatus
ENSMZEG00005005681	snd1	99	84.076	ENSMICG00000000097	SND1	99	83.077	Microcebus_murinus
ENSMZEG00005005681	snd1	99	84.298	ENSMOCG00000005040	Snd1	99	83.297	Microtus_ochrogaster
ENSMZEG00005005681	snd1	100	93.633	ENSMMOG00000001795	snd1	100	93.633	Mola_mola
ENSMZEG00005005681	snd1	98	83.929	ENSMODG00000015182	SND1	100	82.895	Monodelphis_domestica
ENSMZEG00005005681	snd1	100	94.292	ENSMALG00000012071	snd1	100	94.292	Monopterus_albus
ENSMZEG00005005681	snd1	98	84.152	MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	Mus_caroli
ENSMZEG00005005681	snd1	98	83.929	ENSMUSG00000001424	Snd1	99	82.747	Mus_musculus
ENSMZEG00005005681	snd1	98	84.152	MGP_PahariEiJ_G0021917	Snd1	99	84.317	Mus_pahari
ENSMZEG00005005681	snd1	98	84.152	MGP_SPRETEiJ_G0029159	Snd1	99	83.003	Mus_spretus
ENSMZEG00005005681	snd1	100	83.333	ENSMPUG00000006545	SND1	100	83.333	Mustela_putorius_furo
ENSMZEG00005005681	snd1	97	83.166	ENSMLUG00000017130	SND1	99	83.166	Myotis_lucifugus
ENSMZEG00005005681	snd1	99	83.964	ENSNGAG00000011186	Snd1	99	82.967	Nannospalax_galili
ENSMZEG00005005681	snd1	100	99.780	ENSNBRG00000006681	snd1	100	99.780	Neolamprologus_brichardi
ENSMZEG00005005681	snd1	99	83.516	ENSNLEG00000012263	SND1	100	84.442	Nomascus_leucogenys
ENSMZEG00005005681	snd1	91	95.238	ENSOPRG00000013405	SND1	91	95.238	Ochotona_princeps
ENSMZEG00005005681	snd1	99	84.187	ENSODEG00000011502	SND1	100	83.315	Octodon_degus
ENSMZEG00005005681	snd1	100	99.231	ENSONIG00000011481	snd1	97	99.231	Oreochromis_niloticus
ENSMZEG00005005681	snd1	98	83.596	ENSOANG00000000817	SND1	98	83.596	Ornithorhynchus_anatinus
ENSMZEG00005005681	snd1	99	82.747	ENSOCUG00000001620	SND1	99	82.747	Oryctolagus_cuniculus
ENSMZEG00005005681	snd1	100	92.755	ENSORLG00000015201	snd1	100	92.755	Oryzias_latipes
ENSMZEG00005005681	snd1	100	92.975	ENSORLG00020013991	snd1	100	92.975	Oryzias_latipes_hni
ENSMZEG00005005681	snd1	100	92.975	ENSORLG00015012436	snd1	100	92.975	Oryzias_latipes_hsok
ENSMZEG00005005681	snd1	100	93.743	ENSOMEG00000006406	snd1	100	93.743	Oryzias_melastigma
ENSMZEG00005005681	snd1	99	84.000	ENSOGAG00000013356	SND1	93	83.333	Otolemur_garnettii
ENSMZEG00005005681	snd1	97	82.074	ENSOARG00000002149	SND1	100	82.074	Ovis_aries
ENSMZEG00005005681	snd1	99	84.076	ENSPPAG00000042947	SND1	99	83.705	Pan_paniscus
ENSMZEG00005005681	snd1	100	83.333	ENSPPRG00000004494	SND1	100	83.333	Panthera_pardus
ENSMZEG00005005681	snd1	100	83.224	ENSPTIG00000014214	SND1	100	83.224	Panthera_tigris_altaica
ENSMZEG00005005681	snd1	99	84.076	ENSPTRG00000023911	SND1	99	84.312	Pan_troglodytes
ENSMZEG00005005681	snd1	97	84.424	ENSPANG00000011997	SND1	99	84.424	Papio_anubis
ENSMZEG00005005681	snd1	99	86.865	ENSPKIG00000023494	snd1	99	86.260	Paramormyrops_kingsleyae
ENSMZEG00005005681	snd1	93	93.421	ENSPMGG00000003629	snd1	100	93.541	Periophthalmus_magnuspinnatus
ENSMZEG00005005681	snd1	99	84.076	ENSPEMG00000010240	Snd1	99	83.077	Peromyscus_maniculatus_bairdii
ENSMZEG00005005681	snd1	97	74.041	ENSPMAG00000007915	-	99	74.041	Petromyzon_marinus
ENSMZEG00005005681	snd1	98	84.487	ENSPCIG00000011561	SND1	100	83.443	Phascolarctos_cinereus
ENSMZEG00005005681	snd1	100	94.731	ENSPFOG00000001557	snd1	100	94.731	Poecilia_formosa
ENSMZEG00005005681	snd1	100	94.951	ENSPLAG00000018459	snd1	97	94.951	Poecilia_latipinna
ENSMZEG00005005681	snd1	100	94.731	ENSPMEG00000006803	snd1	100	94.731	Poecilia_mexicana
ENSMZEG00005005681	snd1	100	94.621	ENSPREG00000002189	snd1	100	94.621	Poecilia_reticulata
ENSMZEG00005005681	snd1	91	91.667	ENSPPYG00000017972	SND1	99	91.667	Pongo_abelii
ENSMZEG00005005681	snd1	99	74.276	ENSPCAG00000011305	SND1	99	73.516	Procavia_capensis
ENSMZEG00005005681	snd1	99	84.187	ENSPCOG00000026791	SND1	100	84.442	Propithecus_coquereli
ENSMZEG00005005681	snd1	99	82.405	ENSPVAG00000013945	SND1	99	81.429	Pteropus_vampyrus
ENSMZEG00005005681	snd1	100	99.890	ENSPNYG00000000932	snd1	100	99.890	Pundamilia_nyererei
ENSMZEG00005005681	snd1	99	90.659	ENSPNAG00000001206	snd1	99	90.659	Pygocentrus_nattereri
ENSMZEG00005005681	snd1	98	83.929	ENSRNOG00000031173	Snd1	100	83.089	Rattus_norvegicus
ENSMZEG00005005681	snd1	71	87.121	ENSRBIG00000027782	-	93	87.121	Rhinopithecus_bieti
ENSMZEG00005005681	snd1	99	84.187	ENSRROG00000033020	SND1	99	83.187	Rhinopithecus_roxellana
ENSMZEG00005005681	snd1	99	84.076	ENSSBOG00000032461	SND1	99	84.312	Saimiri_boliviensis_boliviensis
ENSMZEG00005005681	snd1	98	81.124	ENSSHAG00000015359	SND1	100	81.124	Sarcophilus_harrisii
ENSMZEG00005005681	snd1	98	87.694	ENSSFOG00015001103	snd1	99	86.819	Scleropages_formosus
ENSMZEG00005005681	snd1	100	93.743	ENSSMAG00000001932	snd1	95	93.743	Scophthalmus_maximus
ENSMZEG00005005681	snd1	100	94.951	ENSSDUG00000002699	snd1	94	94.951	Seriola_dumerili
ENSMZEG00005005681	snd1	100	87.706	ENSSLDG00000001950	snd1	100	87.706	Seriola_lalandi_dorsalis
ENSMZEG00005005681	snd1	88	79.381	ENSSARG00000004877	SND1	92	79.381	Sorex_araneus
ENSMZEG00005005681	snd1	71	80.243	ENSSPUG00000017586	SND1	96	80.243	Sphenodon_punctatus
ENSMZEG00005005681	snd1	74	94.416	ENSSPAG00000021398	snd1	99	94.416	Stegastes_partitus
ENSMZEG00005005681	snd1	99	84.187	ENSSSCG00000016590	SND1	99	83.187	Sus_scrofa
ENSMZEG00005005681	snd1	100	93.960	ENSTRUG00000014067	snd1	100	91.987	Takifugu_rubripes
ENSMZEG00005005681	snd1	100	92.975	ENSTNIG00000011019	snd1	100	92.975	Tetraodon_nigroviridis
ENSMZEG00005005681	snd1	95	78.588	ENSTBEG00000003999	SND1	100	78.588	Tupaia_belangeri
ENSMZEG00005005681	snd1	99	79.955	ENSTTRG00000006059	SND1	99	79.341	Tursiops_truncatus
ENSMZEG00005005681	snd1	87	83.840	ENSUAMG00000005604	-	93	83.840	Ursus_americanus
ENSMZEG00005005681	snd1	70	76.440	ENSUAMG00000002820	-	89	76.440	Ursus_americanus
ENSMZEG00005005681	snd1	100	83.333	ENSUMAG00000005960	SND1	100	83.333	Ursus_maritimus
ENSMZEG00005005681	snd1	77	95.238	ENSVPAG00000008302	SND1	73	95.238	Vicugna_pacos
ENSMZEG00005005681	snd1	100	83.333	ENSVVUG00000007226	SND1	100	83.333	Vulpes_vulpes
ENSMZEG00005005681	snd1	97	80.947	ENSXETG00000023043	snd1	100	80.936	Xenopus_tropicalis
ENSMZEG00005005681	snd1	93	92.455	ENSXCOG00000013629	snd1	99	92.043	Xiphophorus_couchianus
ENSMZEG00005005681	snd1	100	95.170	ENSXMAG00000011469	snd1	100	95.170	Xiphophorus_maculatus