EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005005834 (Gene tree)
Gene ID: 101486682
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 27939 bases
Position: chrLG22:17712773-17740711
Accession: 101486682
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	1	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	2	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	3	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	4	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	5	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	6	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	7	8
ENSMZEP00005007681	PUF	PF00806.19	3.3e-69	8	8
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	1	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	2	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	3	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	4	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	5	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	6	7
ENSMZEP00005007711	PUF	PF00806.19	3.9e-61	7	7

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005008029	-	3450	-	ENSMZEP00005007711	1149 (aa)	-	-
ENSMZET00005007999	-	5599	XM_004548016	ENSMZEP00005007681	1163 (aa)	XP_004548073	UPI0003BCDE2C

Gene Model

Click here to download ENSMZEG00005005834's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005005834's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005005834	pum1	100	76.364	ENSG00000134644	PUM1	100	81.064	Homo_sapiens
ENSMZEG00005005834	pum1	100	99.140	ENSAPOG00000021632	pum1	100	99.140	Acanthochromis_polyacanthus
ENSMZEG00005005834	pum1	100	76.238	ENSAMEG00000017656	PUM1	97	74.298	Ailuropoda_melanoleuca
ENSMZEG00005005834	pum1	100	98.366	ENSACIG00000021013	pum1	100	98.366	Amphilophus_citrinellus
ENSMZEG00005005834	pum1	100	99.140	ENSAOCG00000003944	pum1	100	99.140	Amphiprion_ocellaris
ENSMZEG00005005834	pum1	100	99.140	ENSAPEG00000014550	pum1	100	99.140	Amphiprion_percula
ENSMZEG00005005834	pum1	100	98.538	ENSATEG00000016004	pum1	100	98.538	Anabas_testudineus
ENSMZEG00005005834	pum1	100	76.796	ENSAPLG00000009351	PUM1	100	74.690	Anas_platyrhynchos
ENSMZEG00005005834	pum1	100	76.407	ENSACAG00000000682	PUM1	98	76.076	Anolis_carolinensis
ENSMZEG00005005834	pum1	100	76.135	ENSANAG00000027865	PUM1	100	80.941	Aotus_nancymaae
ENSMZEG00005005834	pum1	92	99.906	ENSACLG00000019354	pum1	100	99.906	Astatotilapia_calliptera
ENSMZEG00005005834	pum1	100	82.203	ENSAMXG00000020607	pum1	96	82.119	Astyanax_mexicanus
ENSMZEG00005005834	pum1	100	76.364	ENSBTAG00000018979	PUM1	100	81.211	Bos_taurus
ENSMZEG00005005834	pum1	100	76.466	ENSCJAG00000006035	PUM1	100	81.064	Callithrix_jacchus
ENSMZEG00005005834	pum1	93	78.292	ENSCAFG00020024616	PUM1	98	81.188	Canis_lupus_dingo
ENSMZEG00005005834	pum1	100	76.364	ENSCHIG00000012952	PUM1	100	76.200	Capra_hircus
ENSMZEG00005005834	pum1	93	86.701	ENSTSYG00000008868	PUM1	100	87.212	Carlito_syrichta
ENSMZEG00005005834	pum1	100	76.053	ENSCPOG00000031613	PUM1	100	80.817	Cavia_porcellus
ENSMZEG00005005834	pum1	94	91.084	ENSCATG00000017991	PUM1	93	91.566	Cercocebus_atys
ENSMZEG00005005834	pum1	100	76.053	ENSCLAG00000007662	PUM1	100	80.817	Chinchilla_lanigera
ENSMZEG00005005834	pum1	100	75.286	ENSCSAG00000001028	PUM1	100	73.361	Chlorocebus_sabaeus
ENSMZEG00005005834	pum1	93	66.059	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSMZEG00005005834	pum1	100	76.529	ENSCPBG00000009288	PUM1	100	81.312	Chrysemys_picta_bellii
ENSMZEG00005005834	pum1	100	76.364	ENSCANG00000042606	PUM1	100	81.064	Colobus_angolensis_palliatus
ENSMZEG00005005834	pum1	100	75.434	ENSCGRG00001024949	Pum1	100	82.695	Cricetulus_griseus_chok1gshd
ENSMZEG00005005834	pum1	100	75.434	ENSCGRG00000014197	Pum1	100	82.695	Cricetulus_griseus_crigri
ENSMZEG00005005834	pum1	92	96.626	ENSCSEG00000015981	pum1	100	96.626	Cynoglossus_semilaevis
ENSMZEG00005005834	pum1	100	98.022	ENSCVAG00000007043	pum1	100	98.022	Cyprinodon_variegatus
ENSMZEG00005005834	pum1	100	83.912	ENSDARG00000099256	pum1	100	81.186	Danio_rerio
ENSMZEG00005005834	pum1	100	76.631	ENSDNOG00000010939	PUM1	100	74.773	Dasypus_novemcinctus
ENSMZEG00005005834	pum1	90	73.007	ENSETEG00000004355	PUM1	87	71.319	Echinops_telfairi
ENSMZEG00005005834	pum1	100	76.364	ENSEASG00005010813	PUM1	100	74.338	Equus_asinus_asinus
ENSMZEG00005005834	pum1	100	76.218	ENSECAG00000021369	PUM1	100	74.194	Equus_caballus
ENSMZEG00005005834	pum1	76	90.222	ENSEEUG00000003871	PUM1	74	90.667	Erinaceus_europaeus
ENSMZEG00005005834	pum1	100	89.164	ENSELUG00000002409	pum1	100	92.373	Esox_lucius
ENSMZEG00005005834	pum1	100	76.383	ENSFCAG00000010374	PUM1	100	81.188	Felis_catus
ENSMZEG00005005834	pum1	100	76.480	ENSFALG00000001214	PUM1	97	74.547	Ficedula_albicollis
ENSMZEG00005005834	pum1	100	76.053	ENSFDAG00000011319	PUM1	100	80.817	Fukomys_damarensis
ENSMZEG00005005834	pum1	100	90.870	ENSGMOG00000010491	pum1	100	90.870	Gadus_morhua
ENSMZEG00005005834	pum1	96	90.141	ENSGALG00000042598	PUM1	99	90.141	Gallus_gallus
ENSMZEG00005005834	pum1	100	98.022	ENSGAFG00000015617	pum1	100	98.022	Gambusia_affinis
ENSMZEG00005005834	pum1	99	96.897	ENSGACG00000005717	pum1	100	96.897	Gasterosteus_aculeatus
ENSMZEG00005005834	pum1	96	90.342	ENSGAGG00000001290	PUM1	99	90.342	Gopherus_agassizii
ENSMZEG00005005834	pum1	100	76.364	ENSGGOG00000011983	PUM1	100	81.064	Gorilla_gorilla
ENSMZEG00005005834	pum1	100	100.000	ENSHBUG00000018718	pum1	100	100.000	Haplochromis_burtoni
ENSMZEG00005005834	pum1	100	75.970	ENSHGLG00000013819	Pum1	100	80.693	Heterocephalus_glaber_female
ENSMZEG00005005834	pum1	100	75.970	ENSHGLG00100008621	Pum1	100	80.693	Heterocephalus_glaber_male
ENSMZEG00005005834	pum1	92	90.432	ENSHCOG00000005149	pum1	100	89.118	Hippocampus_comes
ENSMZEG00005005834	pum1	100	80.792	ENSIPUG00000020421	pum1	100	80.960	Ictalurus_punctatus
ENSMZEG00005005834	pum1	100	76.364	ENSSTOG00000010757	PUM1	100	81.064	Ictidomys_tridecemlineatus
ENSMZEG00005005834	pum1	100	76.364	ENSJJAG00000000530	Pum1	100	81.188	Jaculus_jaculus
ENSMZEG00005005834	pum1	100	98.108	ENSKMAG00000003481	pum1	100	98.108	Kryptolebias_marmoratus
ENSMZEG00005005834	pum1	100	97.334	ENSLBEG00000002527	pum1	100	97.334	Labrus_bergylta
ENSMZEG00005005834	pum1	100	75.349	ENSLACG00000017188	PUM1	99	73.179	Latimeria_chalumnae
ENSMZEG00005005834	pum1	100	81.833	ENSLOCG00000005210	pum1	99	80.833	Lepisosteus_oculatus
ENSMZEG00005005834	pum1	100	76.515	ENSLAFG00000003178	PUM1	100	74.586	Loxodonta_africana
ENSMZEG00005005834	pum1	100	76.049	ENSMFAG00000010291	PUM1	100	81.064	Macaca_fascicularis
ENSMZEG00005005834	pum1	100	76.049	ENSMMUG00000013520	PUM1	100	81.064	Macaca_mulatta
ENSMZEG00005005834	pum1	100	76.364	ENSMNEG00000034639	PUM1	100	81.064	Macaca_nemestrina
ENSMZEG00005005834	pum1	100	76.364	ENSMLEG00000038743	PUM1	100	81.064	Mandrillus_leucophaeus
ENSMZEG00005005834	pum1	100	98.280	ENSMAMG00000011606	pum1	100	98.280	Mastacembelus_armatus
ENSMZEG00005005834	pum1	100	77.025	ENSMGAG00000000724	PUM1	100	76.931	Meleagris_gallopavo
ENSMZEG00005005834	pum1	100	76.179	ENSMAUG00000022090	Pum1	100	83.045	Mesocricetus_auratus
ENSMZEG00005005834	pum1	94	87.740	ENSMICG00000012213	-	100	88.193	Microcebus_murinus
ENSMZEG00005005834	pum1	100	76.053	ENSMICG00000007713	-	100	80.817	Microcebus_murinus
ENSMZEG00005005834	pum1	100	75.620	ENSMOCG00000015463	Pum1	100	82.818	Microtus_ochrogaster
ENSMZEG00005005834	pum1	85	98.313	ENSMMOG00000019817	pum1	100	72.315	Mola_mola
ENSMZEG00005005834	pum1	100	76.305	ENSMODG00000017067	PUM1	100	74.440	Monodelphis_domestica
ENSMZEG00005005834	pum1	85	99.036	ENSMALG00000016399	pum1	100	78.063	Monopterus_albus
ENSMZEG00005005834	pum1	100	75.289	MGP_CAROLIEiJ_G0026549	Pum1	100	80.693	Mus_caroli
ENSMZEG00005005834	pum1	100	75.289	ENSMUSG00000028580	Pum1	100	80.569	Mus_musculus
ENSMZEG00005005834	pum1	100	75.207	MGP_PahariEiJ_G0028881	Pum1	100	80.569	Mus_pahari
ENSMZEG00005005834	pum1	100	75.785	MGP_SPRETEiJ_G0027529	Pum1	100	80.569	Mus_spretus
ENSMZEG00005005834	pum1	100	76.446	ENSMPUG00000015454	PUM1	100	74.338	Mustela_putorius_furo
ENSMZEG00005005834	pum1	100	76.218	ENSMLUG00000006490	PUM1	100	74.111	Myotis_lucifugus
ENSMZEG00005005834	pum1	100	76.281	ENSNGAG00000002378	Pum1	100	81.064	Nannospalax_galili
ENSMZEG00005005834	pum1	79	100.000	ENSNBRG00000010689	pum1	100	100.000	Neolamprologus_brichardi
ENSMZEG00005005834	pum1	94	87.470	ENSNLEG00000001151	PUM1	100	87.952	Nomascus_leucogenys
ENSMZEG00005005834	pum1	73	78.621	ENSMEUG00000000976	-	67	80.418	Notamacropus_eugenii
ENSMZEG00005005834	pum1	81	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSMZEG00005005834	pum1	100	76.116	ENSODEG00000003465	PUM1	100	80.817	Octodon_degus
ENSMZEG00005005834	pum1	100	99.312	ENSONIG00000002290	pum1	100	99.312	Oreochromis_niloticus
ENSMZEG00005005834	pum1	85	63.535	ENSOANG00000004902	-	100	61.594	Ornithorhynchus_anatinus
ENSMZEG00005005834	pum1	99	76.261	ENSOCUG00000008641	PUM1	99	74.234	Oryctolagus_cuniculus
ENSMZEG00005005834	pum1	100	97.686	ENSORLG00000011482	pum1	100	97.686	Oryzias_latipes
ENSMZEG00005005834	pum1	100	97.686	ENSORLG00020019461	pum1	100	97.686	Oryzias_latipes_hni
ENSMZEG00005005834	pum1	100	97.686	ENSORLG00015011375	pum1	100	97.686	Oryzias_latipes_hsok
ENSMZEG00005005834	pum1	87	98.554	ENSOMEG00000009312	pum1	100	75.686	Oryzias_melastigma
ENSMZEG00005005834	pum1	100	73.737	ENSOGAG00000011063	PUM1	100	71.784	Otolemur_garnettii
ENSMZEG00005005834	pum1	100	75.640	ENSOARG00000001899	PUM1	100	73.697	Ovis_aries
ENSMZEG00005005834	pum1	100	76.364	ENSPPAG00000044003	PUM1	100	81.064	Pan_paniscus
ENSMZEG00005005834	pum1	100	76.446	ENSPPRG00000001370	PUM1	100	81.188	Panthera_pardus
ENSMZEG00005005834	pum1	100	76.281	ENSPTIG00000010798	PUM1	100	81.436	Panthera_tigris_altaica
ENSMZEG00005005834	pum1	100	76.364	ENSPTRG00000000453	PUM1	100	81.064	Pan_troglodytes
ENSMZEG00005005834	pum1	100	76.364	ENSPANG00000016338	PUM1	100	81.064	Papio_anubis
ENSMZEG00005005834	pum1	95	92.530	ENSPKIG00000010578	pum1	100	77.186	Paramormyrops_kingsleyae
ENSMZEG00005005834	pum1	100	77.012	ENSPSIG00000014118	PUM1	100	74.834	Pelodiscus_sinensis
ENSMZEG00005005834	pum1	79	99.153	ENSPMGG00000005836	pum1	100	99.153	Periophthalmus_magnuspinnatus
ENSMZEG00005005834	pum1	100	76.179	ENSPEMG00000010009	Pum1	100	83.045	Peromyscus_maniculatus_bairdii
ENSMZEG00005005834	pum1	100	76.388	ENSPCIG00000014151	PUM1	100	80.841	Phascolarctos_cinereus
ENSMZEG00005005834	pum1	95	97.305	ENSPFOG00000007289	pum1	99	97.685	Poecilia_formosa
ENSMZEG00005005834	pum1	100	94.983	ENSPLAG00000007256	pum1	100	97.778	Poecilia_latipinna
ENSMZEG00005005834	pum1	92	97.292	ENSPMEG00000019543	pum1	99	97.292	Poecilia_mexicana
ENSMZEG00005005834	pum1	100	97.936	ENSPREG00000005195	pum1	100	98.305	Poecilia_reticulata
ENSMZEG00005005834	pum1	100	74.878	ENSPPYG00000001621	PUM1	100	72.971	Pongo_abelii
ENSMZEG00005005834	pum1	76	93.210	ENSPCAG00000001979	PUM1	73	93.210	Procavia_capensis
ENSMZEG00005005834	pum1	100	76.053	ENSPCOG00000004398	PUM1	100	80.817	Propithecus_coquereli
ENSMZEG00005005834	pum1	100	74.524	ENSPVAG00000005207	PUM1	97	72.577	Pteropus_vampyrus
ENSMZEG00005005834	pum1	100	99.914	ENSPNYG00000009518	pum1	100	99.914	Pundamilia_nyererei
ENSMZEG00005005834	pum1	100	82.458	ENSPNAG00000026728	pum1	100	82.458	Pygocentrus_nattereri
ENSMZEG00005005834	pum1	100	75.372	ENSRNOG00000011709	Pum1	100	74.007	Rattus_norvegicus
ENSMZEG00005005834	pum1	100	76.364	ENSRBIG00000042521	PUM1	100	81.064	Rhinopithecus_bieti
ENSMZEG00005005834	pum1	100	76.364	ENSRROG00000020156	PUM1	100	81.064	Rhinopithecus_roxellana
ENSMZEG00005005834	pum1	100	76.383	ENSSBOG00000032037	PUM1	100	81.064	Saimiri_boliviensis_boliviensis
ENSMZEG00005005834	pum1	100	76.388	ENSSHAG00000010918	PUM1	100	74.523	Sarcophilus_harrisii
ENSMZEG00005005834	pum1	100	97.077	ENSSMAG00000010918	pum1	100	97.077	Scophthalmus_maximus
ENSMZEG00005005834	pum1	100	98.882	ENSSDUG00000009021	pum1	100	98.882	Seriola_dumerili
ENSMZEG00005005834	pum1	94	98.730	ENSSLDG00000009667	pum1	100	98.730	Seriola_lalandi_dorsalis
ENSMZEG00005005834	pum1	94	79.667	ENSSARG00000003055	PUM1	88	79.234	Sorex_araneus
ENSMZEG00005005834	pum1	100	76.777	ENSSPUG00000006267	PUM1	100	74.669	Sphenodon_punctatus
ENSMZEG00005005834	pum1	100	99.226	ENSSPAG00000016636	pum1	100	99.226	Stegastes_partitus
ENSMZEG00005005834	pum1	100	88.934	ENSSSCG00000003591	PUM1	95	89.336	Sus_scrofa
ENSMZEG00005005834	pum1	100	97.506	ENSTRUG00000013121	pum1	100	98.375	Takifugu_rubripes
ENSMZEG00005005834	pum1	100	96.325	ENSTNIG00000016983	pum1	99	96.325	Tetraodon_nigroviridis
ENSMZEG00005005834	pum1	89	90.244	ENSTBEG00000013810	PUM1	89	90.244	Tupaia_belangeri
ENSMZEG00005005834	pum1	93	79.072	ENSTTRG00000007436	PUM1	88	76.846	Tursiops_truncatus
ENSMZEG00005005834	pum1	99	74.503	ENSUAMG00000018262	-	100	72.373	Ursus_americanus
ENSMZEG00005005834	pum1	92	83.704	ENSVPAG00000005902	PUM1	92	81.559	Vicugna_pacos
ENSMZEG00005005834	pum1	100	76.301	ENSVVUG00000014631	PUM1	100	76.121	Vulpes_vulpes
ENSMZEG00005005834	pum1	100	73.163	ENSXETG00000012904	pum1	99	71.712	Xenopus_tropicalis
ENSMZEG00005005834	pum1	100	98.022	ENSXMAG00000002945	pum1	100	98.095	Xiphophorus_maculatus