EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSMZEG00005006141 (Gene tree)
Gene ID
101472096
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Maylandia_zebra
Status
putative
Strand
Minus strand
Length
12113 bases
Position
chrLG19:8882780-8894892
Accession
101472096
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMZEP00005008115PABPPF00658.186.2e-3111
ENSMZEP00005008095PABPPF00658.186.9e-3111
ENSMZEP00005008115RRM_5PF13893.67.9e-0911
ENSMZEP00005008095RRM_5PF13893.61e-0811
ENSMZEP00005008115RRM_1PF00076.224.7e-9014
ENSMZEP00005008115RRM_1PF00076.224.7e-9024
ENSMZEP00005008115RRM_1PF00076.224.7e-9034
ENSMZEP00005008115RRM_1PF00076.224.7e-9044
ENSMZEP00005008095RRM_1PF00076.226.1e-9014
ENSMZEP00005008095RRM_1PF00076.226.1e-9024
ENSMZEP00005008095RRM_1PF00076.226.1e-9034
ENSMZEP00005008095RRM_1PF00076.226.1e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMZET00005008438-1797-ENSMZEP00005008115598 (aa)--
ENSMZET00005008417-3291XM_004566553ENSMZEP00005008095627 (aa)XP_004566610UPI000D30A5C6
Gene Model
Click here to download ENSMZEG00005006141's gene model file
Pathways
Pathway IDPathway NameSource
mze03013RNA transportKEGG
mze03015mRNA surveillance pathwayKEGG
mze03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005006141's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMZEG00005006141pabpc410084.713ENSG00000090621PABPC49996.396Homo_sapiens
ENSMZEG00005006141pabpc49996.926ENSAPOG00000001161pabpc410096.651Acanthochromis_polyacanthus
ENSMZEG00005006141pabpc49750.166ENSAMEG00000015083-9849.584Ailuropoda_melanoleuca
ENSMZEG00005006141pabpc410079.970ENSAMEG00000011535-10079.372Ailuropoda_melanoleuca
ENSMZEG00005006141pabpc410097.785ENSACIG00000023343pabpc410097.785Amphilophus_citrinellus
ENSMZEG00005006141pabpc410096.491ENSAOCG00000021529pabpc410096.491Amphiprion_ocellaris
ENSMZEG00005006141pabpc410096.491ENSAPEG00000019196pabpc410096.491Amphiprion_percula
ENSMZEG00005006141pabpc410097.134ENSATEG00000007402pabpc410097.134Anabas_testudineus
ENSMZEG00005006141pabpc49985.512ENSAPLG00000009729-10084.882Anas_platyrhynchos
ENSMZEG00005006141pabpc49884.752ENSACAG00000002544PABPC410084.043Anolis_carolinensis
ENSMZEG00005006141pabpc410082.893ENSANAG00000025079PABPC410082.812Aotus_nancymaae
ENSMZEG00005006141pabpc410099.841ENSACLG00000019558pabpc410099.841Astatotilapia_calliptera
ENSMZEG00005006141pabpc49987.005ENSAMXG00000018779pabpc49987.005Astyanax_mexicanus
ENSMZEG00005006141pabpc410081.804ENSBTAG00000017125PABPC410081.193Bos_taurus
ENSMZEG00005006141pabpc46184.431ENSBTAG00000048536-9384.431Bos_taurus
ENSMZEG00005006141pabpc410082.893ENSCJAG00000002512-10090.847Callithrix_jacchus
ENSMZEG00005006141pabpc47385.204ENSCJAG00000045953-8578.571Callithrix_jacchus
ENSMZEG00005006141pabpc410083.048ENSCAFG00000003081PABPC410082.969Canis_familiaris
ENSMZEG00005006141pabpc410080.120ENSCAFG00020004161PABPC410079.522Canis_lupus_dingo
ENSMZEG00005006141pabpc49290.583ENSCHIG00000019398-10079.223Capra_hircus
ENSMZEG00005006141pabpc410065.278ENSCHIG00000023385-10064.815Capra_hircus
ENSMZEG00005006141pabpc410083.594ENSTSYG00000006532PABPC410091.076Carlito_syrichta
ENSMZEG00005006141pabpc49982.710ENSCAPG00000015984PABPC410082.645Cavia_aperea
ENSMZEG00005006141pabpc410082.946ENSCPOG00000009552PABPC410082.969Cavia_porcellus
ENSMZEG00005006141pabpc49390.583ENSCCAG00000037306PABPC410082.656Cebus_capucinus
ENSMZEG00005006141pabpc410083.048ENSCATG00000042164PABPC410082.969Cercocebus_atys
ENSMZEG00005006141pabpc410082.791ENSCLAG00000011899PABPC410083.125Chinchilla_lanigera
ENSMZEG00005006141pabpc49290.807ENSCSAG00000001135PABPC410079.372Chlorocebus_sabaeus
ENSMZEG00005006141pabpc49189.211ENSCHOG00000005327PABPC47990.489Choloepus_hoffmanni
ENSMZEG00005006141pabpc49986.299ENSCPBG00000001038PABPC410085.669Chrysemys_picta_bellii
ENSMZEG00005006141pabpc49191.304ENSCANG00000034177PABPC410091.589Colobus_angolensis_palliatus
ENSMZEG00005006141pabpc49885.203ENSCGRG00001018166Pabpc410084.236Cricetulus_griseus_chok1gshd
ENSMZEG00005006141pabpc49785.479ENSCGRG00000009777Pabpc410084.491Cricetulus_griseus_crigri
ENSMZEG00005006141pabpc410095.853ENSCSEG00000000130pabpc410095.853Cynoglossus_semilaevis
ENSMZEG00005006141pabpc49996.266ENSCVAG00000019246pabpc410096.266Cyprinodon_variegatus
ENSMZEG00005006141pabpc49892.823ENSDARG00000059259pabpc410092.562Danio_rerio
ENSMZEG00005006141pabpc48992.473ENSDNOG00000018444-10081.898Dasypus_novemcinctus
ENSMZEG00005006141pabpc410081.930ENSDORG00000011581Pabpc410081.317Dipodomys_ordii
ENSMZEG00005006141pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSMZEG00005006141pabpc48554.128ENSETEG00000009172-9953.237Echinops_telfairi
ENSMZEG00005006141pabpc49677.073ENSEBUG00000013782pabpc49976.433Eptatretus_burgeri
ENSMZEG00005006141pabpc49876.630ENSEBUG00000000992pabpc49976.570Eptatretus_burgeri
ENSMZEG00005006141pabpc49290.807ENSEASG00005014119PABPC410079.372Equus_asinus_asinus
ENSMZEG00005006141pabpc49290.807ENSECAG00000009396PABPC410079.372Equus_caballus
ENSMZEG00005006141pabpc48892.135ENSEEUG00000002962PABPC410078.027Erinaceus_europaeus
ENSMZEG00005006141pabpc49892.834ENSELUG00000003195pabpc410092.019Esox_lucius
ENSMZEG00005006141pabpc410083.048ENSFCAG00000015254-10082.969Felis_catus
ENSMZEG00005006141pabpc49985.266ENSFALG00000000543PABPC410085.647Ficedula_albicollis
ENSMZEG00005006141pabpc410079.821ENSFDAG00000020016-10079.223Fukomys_damarensis
ENSMZEG00005006141pabpc48852.017ENSFDAG00000010581-9949.828Fukomys_damarensis
ENSMZEG00005006141pabpc49996.326ENSFHEG00000007548pabpc410096.326Fundulus_heteroclitus
ENSMZEG00005006141pabpc410091.066ENSGMOG00000019025pabpc410091.066Gadus_morhua
ENSMZEG00005006141pabpc49986.299ENSGALG00000003800PABPC410085.669Gallus_gallus
ENSMZEG00005006141pabpc49997.608ENSGAFG00000018195pabpc410097.608Gambusia_affinis
ENSMZEG00005006141pabpc410094.418ENSGACG00000007179pabpc410094.418Gasterosteus_aculeatus
ENSMZEG00005006141pabpc49986.457ENSGAGG00000001888PABPC410085.827Gopherus_agassizii
ENSMZEG00005006141pabpc410082.893ENSGGOG00000004002PABPC410082.812Gorilla_gorilla
ENSMZEG00005006141pabpc410099.681ENSHBUG00000020206pabpc410099.681Haplochromis_burtoni
ENSMZEG00005006141pabpc410082.791ENSHGLG00000011162PABPC410082.812Heterocephalus_glaber_female
ENSMZEG00005006141pabpc410082.791ENSHGLG00100001580PABPC410082.812Heterocephalus_glaber_male
ENSMZEG00005006141pabpc410095.056ENSHCOG00000012694pabpc410096.013Hippocampus_comes
ENSMZEG00005006141pabpc49792.581ENSIPUG00000016620pabpc410091.798Ictalurus_punctatus
ENSMZEG00005006141pabpc410084.713ENSSTOG00000010416PABPC410084.076Ictidomys_tridecemlineatus
ENSMZEG00005006141pabpc410080.828ENSJJAG00000007781Pabpc410080.092Jaculus_jaculus
ENSMZEG00005006141pabpc410095.223ENSKMAG00000013597pabpc410095.223Kryptolebias_marmoratus
ENSMZEG00005006141pabpc410095.397ENSLBEG00000013654pabpc410095.397Labrus_bergylta
ENSMZEG00005006141pabpc49987.107ENSLACG00000011907PABPC410086.635Latimeria_chalumnae
ENSMZEG00005006141pabpc49991.811ENSLOCG00000001877pabpc410091.811Lepisosteus_oculatus
ENSMZEG00005006141pabpc410085.032ENSLAFG00000000151PABPC410084.395Loxodonta_africana
ENSMZEG00005006141pabpc410083.048ENSMFAG00000041481PABPC410082.969Macaca_fascicularis
ENSMZEG00005006141pabpc49290.807ENSMMUG00000007497PABPC410079.372Macaca_mulatta
ENSMZEG00005006141pabpc410083.048ENSMNEG00000043054PABPC410082.969Macaca_nemestrina
ENSMZEG00005006141pabpc410083.048ENSMLEG00000040716PABPC410082.969Mandrillus_leucophaeus
ENSMZEG00005006141pabpc410097.129ENSMAMG00000010025pabpc410097.129Mastacembelus_armatus
ENSMZEG00005006141pabpc49883.446ENSMGAG00000005408PABPC410082.770Meleagris_gallopavo
ENSMZEG00005006141pabpc46080.117ENSMAUG00000004089-9280.117Mesocricetus_auratus
ENSMZEG00005006141pabpc47281.152ENSMAUG00000001295-9777.619Mesocricetus_auratus
ENSMZEG00005006141pabpc49874.233ENSMAUG00000019763-10074.233Mesocricetus_auratus
ENSMZEG00005006141pabpc49976.030ENSMICG00000036729-10075.281Microcebus_murinus
ENSMZEG00005006141pabpc480100.000ENSMICG00000016633-10084.144Microcebus_murinus
ENSMZEG00005006141pabpc410083.810ENSMOCG00000006763Pabpc410083.281Microtus_ochrogaster
ENSMZEG00005006141pabpc410092.504ENSMMOG00000002363pabpc410092.663Mola_mola
ENSMZEG00005006141pabpc46371.467ENSMODG00000018051-9671.467Monodelphis_domestica
ENSMZEG00005006141pabpc49784.129ENSMODG00000017657-10082.905Monodelphis_domestica
ENSMZEG00005006141pabpc410096.979ENSMALG00000011017pabpc410096.979Monopterus_albus
ENSMZEG00005006141pabpc410079.223MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSMZEG00005006141pabpc49872.163MGP_CAROLIEiJ_G0024864-10072.711Mus_caroli
ENSMZEG00005006141pabpc410084.395ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSMZEG00005006141pabpc49979.697MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSMZEG00005006141pabpc49970.332MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSMZEG00005006141pabpc49546.205ENSMPUG00000006836-10045.710Mustela_putorius_furo
ENSMZEG00005006141pabpc410079.970ENSMPUG00000014414-10079.372Mustela_putorius_furo
ENSMZEG00005006141pabpc410084.554ENSMLUG00000012068PABPC410083.917Myotis_lucifugus
ENSMZEG00005006141pabpc410085.032ENSNGAG00000018292Pabpc410084.395Nannospalax_galili
ENSMZEG00005006141pabpc46898.193ENSNBRG00000010047-7298.193Neolamprologus_brichardi
ENSMZEG00005006141pabpc46399.519ENSNBRG00000009708pabpc49899.519Neolamprologus_brichardi
ENSMZEG00005006141pabpc410083.048ENSNLEG00000011928PABPC410082.969Nomascus_leucogenys
ENSMZEG00005006141pabpc48593.651ENSOPRG00000011984PABPC48693.651Ochotona_princeps
ENSMZEG00005006141pabpc45682.857ENSODEG00000013457-10082.857Octodon_degus
ENSMZEG00005006141pabpc410082.893ENSODEG00000006592-10082.500Octodon_degus
ENSMZEG00005006141pabpc49973.706ENSODEG00000017434-10073.085Octodon_degus
ENSMZEG00005006141pabpc410099.362ENSONIG00000008176pabpc410099.362Oreochromis_niloticus
ENSMZEG00005006141pabpc49985.669ENSOANG00000010001PABPC410085.039Ornithorhynchus_anatinus
ENSMZEG00005006141pabpc48795.946ENSOCUG00000000562PABPC48879.749Oryctolagus_cuniculus
ENSMZEG00005006141pabpc410096.914ENSORLG00000017479pabpc49996.914Oryzias_latipes
ENSMZEG00005006141pabpc410096.914ENSORLG00020018644pabpc410096.914Oryzias_latipes_hni
ENSMZEG00005006141pabpc410096.914ENSORLG00015015042pabpc410096.914Oryzias_latipes_hsok
ENSMZEG00005006141pabpc49995.793ENSOMEG00000014410pabpc410095.541Oryzias_melastigma
ENSMZEG00005006141pabpc410081.707ENSOGAG00000004067PABPC410080.793Otolemur_garnettii
ENSMZEG00005006141pabpc49290.583ENSOARG00000020060PABPC410079.223Ovis_aries
ENSMZEG00005006141pabpc410082.893ENSPPAG00000043625PABPC410082.812Pan_paniscus
ENSMZEG00005006141pabpc410083.048ENSPPRG00000024727PABPC410082.969Panthera_pardus
ENSMZEG00005006141pabpc410083.048ENSPTIG00000005829PABPC410082.969Panthera_tigris_altaica
ENSMZEG00005006141pabpc410082.893ENSPTRG00000000573PABPC410082.812Pan_troglodytes
ENSMZEG00005006141pabpc410083.048ENSPANG00000009484PABPC410082.969Papio_anubis
ENSMZEG00005006141pabpc410090.439ENSPKIG00000025356pabpc410090.439Paramormyrops_kingsleyae
ENSMZEG00005006141pabpc49986.614ENSPSIG00000016892PABPC410085.984Pelodiscus_sinensis
ENSMZEG00005006141pabpc410091.866ENSPMGG00000009073pabpc410091.069Periophthalmus_magnuspinnatus
ENSMZEG00005006141pabpc410082.481ENSPEMG00000023569-10083.125Peromyscus_maniculatus_bairdii
ENSMZEG00005006141pabpc410079.141ENSPEMG00000024193-10079.814Peromyscus_maniculatus_bairdii
ENSMZEG00005006141pabpc48874.913ENSPMAG00000002836pabpc410075.610Petromyzon_marinus
ENSMZEG00005006141pabpc49574.580ENSPMAG00000007885pabpc410073.931Petromyzon_marinus
ENSMZEG00005006141pabpc49787.159ENSPCIG00000020674PABPC410094.903Phascolarctos_cinereus
ENSMZEG00005006141pabpc49995.687ENSPFOG00000002682pabpc410095.687Poecilia_formosa
ENSMZEG00005006141pabpc49995.847ENSPLAG00000010112pabpc410095.847Poecilia_latipinna
ENSMZEG00005006141pabpc49896.429ENSPMEG00000019739pabpc410095.687Poecilia_mexicana
ENSMZEG00005006141pabpc49996.166ENSPREG00000001589pabpc410096.166Poecilia_reticulata
ENSMZEG00005006141pabpc49290.583ENSPPYG00000001506PABPC410079.223Pongo_abelii
ENSMZEG00005006141pabpc49287.736ENSPCAG00000003341PABPC410074.589Procavia_capensis
ENSMZEG00005006141pabpc49969.213ENSPCOG00000025882-9679.091Propithecus_coquereli
ENSMZEG00005006141pabpc410082.919ENSPCOG00000023725-10082.839Propithecus_coquereli
ENSMZEG00005006141pabpc49878.808ENSPVAG00000002187PABPC410078.146Pteropus_vampyrus
ENSMZEG00005006141pabpc410099.841ENSPNYG00000006134pabpc410099.841Pundamilia_nyererei
ENSMZEG00005006141pabpc49993.819ENSPNAG00000024355pabpc410093.819Pygocentrus_nattereri
ENSMZEG00005006141pabpc410079.632ENSRNOG00000028592AABR07035074.110079.020Rattus_norvegicus
ENSMZEG00005006141pabpc410081.776ENSRNOG00000015642Pabpc410081.164Rattus_norvegicus
ENSMZEG00005006141pabpc410083.048ENSRBIG00000039761PABPC410082.969Rhinopithecus_bieti
ENSMZEG00005006141pabpc410083.048ENSRROG00000033355PABPC410082.969Rhinopithecus_roxellana
ENSMZEG00005006141pabpc49390.583ENSSBOG00000026193PABPC410082.656Saimiri_boliviensis_boliviensis
ENSMZEG00005006141pabpc49787.159ENSSHAG00000018139PABPC410085.827Sarcophilus_harrisii
ENSMZEG00005006141pabpc49991.013ENSSFOG00015023514pabpc410091.013Scleropages_formosus
ENSMZEG00005006141pabpc410095.694ENSSMAG00000009007pabpc410095.694Scophthalmus_maximus
ENSMZEG00005006141pabpc49996.440ENSSDUG00000012683pabpc410096.172Seriola_dumerili
ENSMZEG00005006141pabpc49996.440ENSSLDG00000013025pabpc410096.172Seriola_lalandi_dorsalis
ENSMZEG00005006141pabpc49286.792ENSSARG00000000310PABPC410081.693Sorex_araneus
ENSMZEG00005006141pabpc49986.963ENSSPUG00000003204PABPC410086.328Sphenodon_punctatus
ENSMZEG00005006141pabpc410096.491ENSSPAG00000009252pabpc410096.491Stegastes_partitus
ENSMZEG00005006141pabpc410083.048ENSSSCG00000003660-10082.969Sus_scrofa
ENSMZEG00005006141pabpc48945.035ENSSSCG00000036170-9645.355Sus_scrofa
ENSMZEG00005006141pabpc49981.654ENSTGUG00000001266PABPC410081.654Taeniopygia_guttata
ENSMZEG00005006141pabpc410094.418ENSTRUG00000005907pabpc410094.418Takifugu_rubripes
ENSMZEG00005006141pabpc410087.778ENSTNIG00000016902pabpc410087.460Tetraodon_nigroviridis
ENSMZEG00005006141pabpc49187.736ENSTBEG00000009035PABPC410068.377Tupaia_belangeri
ENSMZEG00005006141pabpc49187.736ENSTTRG00000014340PABPC410067.384Tursiops_truncatus
ENSMZEG00005006141pabpc410083.048ENSUAMG00000000303PABPC410082.969Ursus_americanus
ENSMZEG00005006141pabpc410089.342ENSUMAG00000019585PABPC410091.807Ursus_maritimus
ENSMZEG00005006141pabpc46977.419ENSVPAG00000010041PABPC47370.501Vicugna_pacos
ENSMZEG00005006141pabpc410083.048ENSVVUG00000005215PABPC410082.969Vulpes_vulpes
ENSMZEG00005006141pabpc49982.835ENSXETG00000010946pabpc410082.205Xenopus_tropicalis
ENSMZEG00005006141pabpc46796.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSMZEG00005006141pabpc49997.098ENSXCOG00000013190pabpc49696.226Xiphophorus_couchianus
ENSMZEG00005006141pabpc49996.166ENSXMAG00000019007pabpc410096.166Xiphophorus_maculatus

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