EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSMZEG00005006258 (Gene tree)
Gene ID
101471316
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Maylandia_zebra
Status
putative
Strand
Plus strand
Length
12321 bases
Position
chrLG19:22910172-22922492
Accession
101471316
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMZEP00005008278CPSF73-100_CPF11718.82.4e-5311
ENSMZEP00005008256CPSF73-100_CPF11718.85.9e-5311
ENSMZEP00005008278Beta-CaspPF10996.87.6e-3411
ENSMZEP00005008256Beta-CaspPF10996.88.4e-3411
ENSMZEP00005008256Lactamase_BPF00753.271.7e-1811
ENSMZEP00005008278Lactamase_BPF00753.274.1e-0811
ENSMZEP00005008278RMMBLPF07521.125e-2111
ENSMZEP00005008256RMMBLPF07521.125.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMZET00005008584CPSF3-2015548XM_004540504ENSMZEP00005008256690 (aa)XP_004540561UPI000329C71E
ENSMZET00005008608CPSF3-2021914-ENSMZEP00005008278637 (aa)--
Gene Model
Click here to download ENSMZEG00005006258's gene model file
Pathways
Pathway IDPathway NameSource
mze03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005006258's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMZEG00005006258CPSF39888.529ENSG00000119203CPSF3100100.000Homo_sapiens
ENSMZEG00005006258CPSF37498.821ENSAPOG00000012241CPSF39198.821Acanthochromis_polyacanthus
ENSMZEG00005006258CPSF310087.971ENSAPOG00000022087cpsf310087.971Acanthochromis_polyacanthus
ENSMZEG00005006258CPSF39888.676ENSAMEG00000008493CPSF39988.676Ailuropoda_melanoleuca
ENSMZEG00005006258CPSF310098.901ENSACIG00000023663CPSF310098.901Amphilophus_citrinellus
ENSMZEG00005006258CPSF39985.692ENSACIG00000009846cpsf39985.692Amphilophus_citrinellus
ENSMZEG00005006258CPSF310087.826ENSAOCG00000022056cpsf310089.490Amphiprion_ocellaris
ENSMZEG00005006258CPSF310097.681ENSAOCG00000010077CPSF310097.681Amphiprion_ocellaris
ENSMZEG00005006258CPSF310087.971ENSAPEG00000019526cpsf39989.193Amphiprion_percula
ENSMZEG00005006258CPSF310097.681ENSAPEG00000021167CPSF310097.681Amphiprion_percula
ENSMZEG00005006258CPSF39988.663ENSATEG00000003959cpsf39988.663Anabas_testudineus
ENSMZEG00005006258CPSF310090.290ENSATEG00000014525CPSF310090.290Anabas_testudineus
ENSMZEG00005006258CPSF39986.508ENSAPLG00000006941CPSF39888.077Anas_platyrhynchos
ENSMZEG00005006258CPSF39984.786ENSACAG00000001759CPSF39986.142Anolis_carolinensis
ENSMZEG00005006258CPSF39882.794ENSANAG00000031254CPSF39983.208Aotus_nancymaae
ENSMZEG00005006258CPSF3100100.000ENSACLG00000018846CPSF3100100.000Astatotilapia_calliptera
ENSMZEG00005006258CPSF39986.614ENSACLG00000014484cpsf39988.288Astatotilapia_calliptera
ENSMZEG00005006258CPSF310089.420ENSAMXG00000004786cpsf310089.420Astyanax_mexicanus
ENSMZEG00005006258CPSF39888.824ENSBTAG00000019735CPSF39988.824Bos_taurus
ENSMZEG00005006258CPSF39057.886WBGene00013460cpsf-38957.886Caenorhabditis_elegans
ENSMZEG00005006258CPSF39888.235ENSCJAG00000006276CPSF39988.235Callithrix_jacchus
ENSMZEG00005006258CPSF39888.676ENSCAFG00000003375CPSF39588.676Canis_familiaris
ENSMZEG00005006258CPSF38991.396ENSCAFG00020026799CPSF39991.396Canis_lupus_dingo
ENSMZEG00005006258CPSF39888.824ENSCHIG00000013973CPSF39988.824Capra_hircus
ENSMZEG00005006258CPSF39888.529ENSTSYG00000002967CPSF39988.529Carlito_syrichta
ENSMZEG00005006258CPSF39986.667ENSCAPG00000013851CPSF39988.739Cavia_aperea
ENSMZEG00005006258CPSF39888.824ENSCPOG00000011299CPSF39988.824Cavia_porcellus
ENSMZEG00005006258CPSF39888.382ENSCCAG00000036730CPSF39988.382Cebus_capucinus
ENSMZEG00005006258CPSF39886.765ENSCATG00000014770CPSF39993.945Cercocebus_atys
ENSMZEG00005006258CPSF39888.529ENSCLAG00000002727CPSF39988.529Chinchilla_lanigera
ENSMZEG00005006258CPSF39880.588ENSCSAG00000007125CPSF39980.588Chlorocebus_sabaeus
ENSMZEG00005006258CPSF385100.000ENSCHOG00000000180CPSF38563.269Choloepus_hoffmanni
ENSMZEG00005006258CPSF39987.971ENSCPBG00000014074CPSF39987.971Chrysemys_picta_bellii
ENSMZEG00005006258CPSF39868.228ENSCING00000007214-9868.228Ciona_intestinalis
ENSMZEG00005006258CPSF39878.792ENSCANG00000034435CPSF39978.792Colobus_angolensis_palliatus
ENSMZEG00005006258CPSF39888.382ENSCGRG00001013134Cpsf39988.382Cricetulus_griseus_chok1gshd
ENSMZEG00005006258CPSF39888.382ENSCGRG00000018319Cpsf39988.382Cricetulus_griseus_crigri
ENSMZEG00005006258CPSF310093.198ENSCSEG00000002021CPSF310093.509Cynoglossus_semilaevis
ENSMZEG00005006258CPSF310095.797ENSCVAG00000015067CPSF310095.797Cyprinodon_variegatus
ENSMZEG00005006258CPSF35073.585ENSCVAG00000022039-9473.817Cyprinodon_variegatus
ENSMZEG00005006258CPSF310089.710ENSDARG00000027649cpsf310089.710Danio_rerio
ENSMZEG00005006258CPSF39887.812ENSDNOG00000008940CPSF39587.812Dasypus_novemcinctus
ENSMZEG00005006258CPSF39489.506ENSDORG00000014263Cpsf39989.506Dipodomys_ordii
ENSMZEG00005006258CPSF39866.519FBgn0261065Cpsf739866.519Drosophila_melanogaster
ENSMZEG00005006258CPSF39477.759ENSETEG00000003893CPSF39977.469Echinops_telfairi
ENSMZEG00005006258CPSF39976.197ENSEBUG00000009018cpsf39976.685Eptatretus_burgeri
ENSMZEG00005006258CPSF39888.676ENSEASG00005003970CPSF39988.676Equus_asinus_asinus
ENSMZEG00005006258CPSF39888.676ENSECAG00000019911CPSF39693.581Equus_caballus
ENSMZEG00005006258CPSF39873.235ENSEEUG00000015422CPSF39973.235Erinaceus_europaeus
ENSMZEG00005006258CPSF39991.279ENSELUG00000013775cpsf39991.279Esox_lucius
ENSMZEG00005006258CPSF39888.824ENSFCAG00000007852CPSF39988.824Felis_catus
ENSMZEG00005006258CPSF39986.349ENSFALG00000006572CPSF39987.926Ficedula_albicollis
ENSMZEG00005006258CPSF39888.218ENSFDAG00000006317CPSF39988.218Fukomys_damarensis
ENSMZEG00005006258CPSF39986.483ENSFHEG00000014774cpsf39986.483Fundulus_heteroclitus
ENSMZEG00005006258CPSF36478.780ENSFHEG00000012186CPSF310079.024Fundulus_heteroclitus
ENSMZEG00005006258CPSF310088.551ENSGMOG00000003157cpsf310088.551Gadus_morhua
ENSMZEG00005006258CPSF39987.500ENSGALG00000016424CPSF39987.500Gallus_gallus
ENSMZEG00005006258CPSF310085.557ENSGAFG00000019449cpsf310085.557Gambusia_affinis
ENSMZEG00005006258CPSF310095.507ENSGAFG00000008016CPSF310095.507Gambusia_affinis
ENSMZEG00005006258CPSF37384.154ENSGAGG00000025583CPSF39384.154Gopherus_agassizii
ENSMZEG00005006258CPSF39986.349ENSGGOG00000001757CPSF39198.280Gorilla_gorilla
ENSMZEG00005006258CPSF39988.227ENSHBUG00000001188cpsf39988.227Haplochromis_burtoni
ENSMZEG00005006258CPSF36494.828ENSHBUG00000014332CPSF310094.828Haplochromis_burtoni
ENSMZEG00005006258CPSF39888.071ENSHGLG00000000666CPSF39888.071Heterocephalus_glaber_female
ENSMZEG00005006258CPSF39888.071ENSHGLG00100007765CPSF39888.071Heterocephalus_glaber_male
ENSMZEG00005006258CPSF39993.904ENSHCOG00000015957CPSF39993.904Hippocampus_comes
ENSMZEG00005006258CPSF39987.083ENSHCOG00000007251cpsf39987.083Hippocampus_comes
ENSMZEG00005006258CPSF310088.986ENSIPUG00000023488cpsf310088.986Ictalurus_punctatus
ENSMZEG00005006258CPSF39888.676ENSSTOG00000004476CPSF39988.676Ictidomys_tridecemlineatus
ENSMZEG00005006258CPSF39887.941ENSJJAG00000023415Cpsf39987.941Jaculus_jaculus
ENSMZEG00005006258CPSF310086.667ENSKMAG00000002806cpsf310086.667Kryptolebias_marmoratus
ENSMZEG00005006258CPSF310096.667ENSKMAG00000007317CPSF310096.667Kryptolebias_marmoratus
ENSMZEG00005006258CPSF39596.651ENSLBEG00000013492CPSF39996.651Labrus_bergylta
ENSMZEG00005006258CPSF35982.306ENSLBEG00000015018-9983.065Labrus_bergylta
ENSMZEG00005006258CPSF39982.438ENSLBEG00000020569cpsf39682.438Labrus_bergylta
ENSMZEG00005006258CPSF310081.187ENSLACG00000008308CPSF310081.187Latimeria_chalumnae
ENSMZEG00005006258CPSF310089.899ENSLOCG00000016823cpsf310089.899Lepisosteus_oculatus
ENSMZEG00005006258CPSF39986.508ENSLAFG00000009467CPSF39987.482Loxodonta_africana
ENSMZEG00005006258CPSF39888.382ENSMFAG00000001339CPSF39495.417Macaca_fascicularis
ENSMZEG00005006258CPSF39986.190ENSMMUG00000018038CPSF39295.417Macaca_mulatta
ENSMZEG00005006258CPSF39993.500ENSMNEG00000039447CPSF39998.000Macaca_nemestrina
ENSMZEG00005006258CPSF39888.529ENSMLEG00000026825CPSF39298.069Mandrillus_leucophaeus
ENSMZEG00005006258CPSF39988.517ENSMAMG00000003076cpsf39988.517Mastacembelus_armatus
ENSMZEG00005006258CPSF310095.775ENSMAMG00000008835CPSF310095.775Mastacembelus_armatus
ENSMZEG00005006258CPSF39988.227ENSMZEG00005014358cpsf39988.227Maylandia_zebra
ENSMZEG00005006258CPSF39985.714ENSMGAG00000013995CPSF39987.688Meleagris_gallopavo
ENSMZEG00005006258CPSF35979.467ENSMAUG00000000166Cpsf39979.467Mesocricetus_auratus
ENSMZEG00005006258CPSF39883.505ENSMICG00000002363CPSF39983.505Microcebus_murinus
ENSMZEG00005006258CPSF39885.441ENSMOCG00000020067Cpsf39985.441Microtus_ochrogaster
ENSMZEG00005006258CPSF37981.206ENSMMOG00000011923CPSF38581.206Mola_mola
ENSMZEG00005006258CPSF39982.512ENSMMOG00000018212CPSF39884.161Mola_mola
ENSMZEG00005006258CPSF39887.482ENSMODG00000014703CPSF39987.482Monodelphis_domestica
ENSMZEG00005006258CPSF39988.808ENSMALG00000016416cpsf39988.808Monopterus_albus
ENSMZEG00005006258CPSF39692.508ENSMALG00000011474CPSF310091.264Monopterus_albus
ENSMZEG00005006258CPSF39888.088MGP_CAROLIEiJ_G0017640Cpsf39988.088Mus_caroli
ENSMZEG00005006258CPSF39888.088ENSMUSG00000054309Cpsf39698.305Mus_musculus
ENSMZEG00005006258CPSF39887.941MGP_PahariEiJ_G0029397Cpsf39987.941Mus_pahari
ENSMZEG00005006258CPSF39888.088MGP_SPRETEiJ_G0018481Cpsf39988.088Mus_spretus
ENSMZEG00005006258CPSF39888.660ENSMPUG00000013213CPSF39988.660Mustela_putorius_furo
ENSMZEG00005006258CPSF39888.546ENSMLUG00000010636CPSF39988.546Myotis_lucifugus
ENSMZEG00005006258CPSF39888.382ENSNGAG00000019836Cpsf39988.382Nannospalax_galili
ENSMZEG00005006258CPSF3100100.000ENSNBRG00000010525CPSF3100100.000Neolamprologus_brichardi
ENSMZEG00005006258CPSF39987.645ENSNBRG00000004770cpsf39987.645Neolamprologus_brichardi
ENSMZEG00005006258CPSF39888.382ENSNLEG00000013359CPSF39198.280Nomascus_leucogenys
ENSMZEG00005006258CPSF39857.500ENSMEUG00000013117-9957.500Notamacropus_eugenii
ENSMZEG00005006258CPSF39879.823ENSOPRG00000008902CPSF39979.823Ochotona_princeps
ENSMZEG00005006258CPSF39888.529ENSODEG00000003129CPSF39988.529Octodon_degus
ENSMZEG00005006258CPSF39988.808ENSONIG00000018812cpsf39988.808Oreochromis_niloticus
ENSMZEG00005006258CPSF38886.501ENSOANG00000008577CPSF39986.501Ornithorhynchus_anatinus
ENSMZEG00005006258CPSF39888.382ENSOCUG00000003728CPSF39988.382Oryctolagus_cuniculus
ENSMZEG00005006258CPSF39986.773ENSORLG00000018854cpsf39986.773Oryzias_latipes
ENSMZEG00005006258CPSF39986.628ENSORLG00020013331cpsf39986.628Oryzias_latipes_hni
ENSMZEG00005006258CPSF39986.773ENSORLG00015011017cpsf39986.773Oryzias_latipes_hsok
ENSMZEG00005006258CPSF310086.812ENSOMEG00000010647cpsf39686.812Oryzias_melastigma
ENSMZEG00005006258CPSF39878.382ENSOGAG00000001680CPSF39978.382Otolemur_garnettii
ENSMZEG00005006258CPSF39888.824ENSOARG00000015073CPSF39988.824Ovis_aries
ENSMZEG00005006258CPSF39888.529ENSPPAG00000042457CPSF39198.280Pan_paniscus
ENSMZEG00005006258CPSF39888.824ENSPPRG00000016790CPSF39988.824Panthera_pardus
ENSMZEG00005006258CPSF39888.954ENSPTIG00000003920CPSF39988.954Panthera_tigris_altaica
ENSMZEG00005006258CPSF39888.529ENSPTRG00000011638CPSF39198.280Pan_troglodytes
ENSMZEG00005006258CPSF39888.529ENSPANG00000016798CPSF39495.417Papio_anubis
ENSMZEG00005006258CPSF310091.159ENSPKIG00000023646cpsf310091.159Paramormyrops_kingsleyae
ENSMZEG00005006258CPSF39887.372ENSPSIG00000016144CPSF39987.372Pelodiscus_sinensis
ENSMZEG00005006258CPSF36489.655ENSPMGG00000015311CPSF310089.877Periophthalmus_magnuspinnatus
ENSMZEG00005006258CPSF38791.187ENSPMGG00000006141-9691.187Periophthalmus_magnuspinnatus
ENSMZEG00005006258CPSF39888.676ENSPEMG00000017668Cpsf39988.676Peromyscus_maniculatus_bairdii
ENSMZEG00005006258CPSF37989.541ENSPMAG00000004841cpsf310089.541Petromyzon_marinus
ENSMZEG00005006258CPSF39986.349ENSPCIG00000009823CPSF39888.804Phascolarctos_cinereus
ENSMZEG00005006258CPSF310086.522ENSPFOG00000015922cpsf310086.522Poecilia_formosa
ENSMZEG00005006258CPSF310094.783ENSPFOG00000010418-10094.783Poecilia_formosa
ENSMZEG00005006258CPSF36492.611ENSPLAG00000021300-10092.840Poecilia_latipinna
ENSMZEG00005006258CPSF310086.522ENSPLAG00000000882cpsf310086.522Poecilia_latipinna
ENSMZEG00005006258CPSF310086.667ENSPMEG00000018309cpsf310086.667Poecilia_mexicana
ENSMZEG00005006258CPSF310087.536ENSPREG00000004482CPSF310087.536Poecilia_reticulata
ENSMZEG00005006258CPSF310085.400ENSPREG00000014875cpsf310085.400Poecilia_reticulata
ENSMZEG00005006258CPSF39884.265ENSPPYG00000012666CPSF39984.265Pongo_abelii
ENSMZEG00005006258CPSF39457.358ENSPCAG00000015042CPSF38966.102Procavia_capensis
ENSMZEG00005006258CPSF38690.323ENSPCOG00000023016CPSF39790.323Propithecus_coquereli
ENSMZEG00005006258CPSF39888.513ENSPVAG00000005324CPSF39988.513Pteropus_vampyrus
ENSMZEG00005006258CPSF38699.818ENSPNYG00000021047CPSF39299.818Pundamilia_nyererei
ENSMZEG00005006258CPSF39988.227ENSPNYG00000004405cpsf39988.227Pundamilia_nyererei
ENSMZEG00005006258CPSF310089.275ENSPNAG00000023060cpsf310089.275Pygocentrus_nattereri
ENSMZEG00005006258CPSF39987.812ENSRNOG00000052418Cpsf39987.812Rattus_norvegicus
ENSMZEG00005006258CPSF39982.857ENSRBIG00000041615CPSF39984.520Rhinopithecus_bieti
ENSMZEG00005006258CPSF39888.529ENSRROG00000033792CPSF39988.529Rhinopithecus_roxellana
ENSMZEG00005006258CPSF38443.353YLR277CYSH18543.353Saccharomyces_cerevisiae
ENSMZEG00005006258CPSF39982.650ENSSBOG00000027263CPSF39784.925Saimiri_boliviensis_boliviensis
ENSMZEG00005006258CPSF39888.382ENSSHAG00000007024CPSF39988.382Sarcophilus_harrisii
ENSMZEG00005006258CPSF310091.014ENSSFOG00015002108cpsf310091.014Scleropages_formosus
ENSMZEG00005006258CPSF39593.485ENSSMAG00000020534CPSF39793.485Scophthalmus_maximus
ENSMZEG00005006258CPSF310098.116ENSSDUG00000018498CPSF310098.116Seriola_dumerili
ENSMZEG00005006258CPSF310088.406ENSSDUG00000002828cpsf39788.406Seriola_dumerili
ENSMZEG00005006258CPSF310098.116ENSSLDG00000005234CPSF310098.116Seriola_lalandi_dorsalis
ENSMZEG00005006258CPSF310088.551ENSSLDG00000008469cpsf39987.422Seriola_lalandi_dorsalis
ENSMZEG00005006258CPSF38984.369ENSSARG00000005186CPSF39084.369Sorex_araneus
ENSMZEG00005006258CPSF39984.385ENSSPUG00000015525CPSF39786.269Sphenodon_punctatus
ENSMZEG00005006258CPSF310088.406ENSSPAG00000018579cpsf310088.406Stegastes_partitus
ENSMZEG00005006258CPSF310097.536ENSSPAG00000002906CPSF310097.536Stegastes_partitus
ENSMZEG00005006258CPSF39888.676ENSSSCG00000020799CPSF39988.676Sus_scrofa
ENSMZEG00005006258CPSF39987.994ENSTGUG00000013016CPSF39987.994Taeniopygia_guttata
ENSMZEG00005006258CPSF39988.227ENSTRUG00000007030cpsf39888.227Takifugu_rubripes
ENSMZEG00005006258CPSF36479.607ENSTRUG00000013905CPSF310079.803Takifugu_rubripes
ENSMZEG00005006258CPSF38491.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSMZEG00005006258CPSF38674.939ENSTTRG00000000861CPSF38774.939Tursiops_truncatus
ENSMZEG00005006258CPSF39589.329ENSUAMG00000007535CPSF39489.329Ursus_americanus
ENSMZEG00005006258CPSF39986.508ENSUMAG00000003676CPSF39493.369Ursus_maritimus
ENSMZEG00005006258CPSF39288.644ENSVPAG00000008041CPSF310088.644Vicugna_pacos
ENSMZEG00005006258CPSF39888.676ENSVVUG00000002194CPSF39988.676Vulpes_vulpes
ENSMZEG00005006258CPSF39986.357ENSXETG00000008263cpsf39986.357Xenopus_tropicalis
ENSMZEG00005006258CPSF35991.689ENSXCOG00000000957-8791.935Xiphophorus_couchianus
ENSMZEG00005006258CPSF310086.812ENSXCOG00000019695cpsf310086.812Xiphophorus_couchianus
ENSMZEG00005006258CPSF310095.072ENSXMAG00000027291CPSF310095.072Xiphophorus_maculatus
ENSMZEG00005006258CPSF310086.667ENSXMAG00000009784cpsf310086.667Xiphophorus_maculatus

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