EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005007042 (Gene tree)
Gene ID: 101471795
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 7546 bases
Position: chrLG6:28913939-28921484
Accession: 101471795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005009309	EXOSC1	PF10447.9	2e-15	1	1
ENSMZEP00005009309	ECR1_N	PF14382.6	7e-12	1	1
ENSMZEP00005009302	ECR1_N	PF14382.6	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005009652	-	456	-	ENSMZEP00005009302	151 (aa)	-	-
ENSMZET00005009659	-	1609	XM_004539049	ENSMZEP00005009309	194 (aa)	XP_004539106	UPI00032A04E4

Gene Model

Click here to download ENSMZEG00005007042's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005007042's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005007042	exosc1	98	80.105	ENSG00000171311	EXOSC1	98	80.105	Homo_sapiens
ENSMZEG00005007042	exosc1	100	98.454	ENSAPOG00000007822	exosc1	100	98.454	Acanthochromis_polyacanthus
ENSMZEG00005007042	exosc1	98	80.628	ENSAMEG00000000129	EXOSC1	98	80.628	Ailuropoda_melanoleuca
ENSMZEG00005007042	exosc1	95	99.459	ENSACIG00000018956	exosc1	91	99.459	Amphilophus_citrinellus
ENSMZEG00005007042	exosc1	100	98.454	ENSAOCG00000010699	exosc1	100	98.454	Amphiprion_ocellaris
ENSMZEG00005007042	exosc1	93	86.667	ENSAPEG00000012690	exosc1	97	86.667	Amphiprion_percula
ENSMZEG00005007042	exosc1	100	98.454	ENSATEG00000018683	exosc1	100	98.454	Anabas_testudineus
ENSMZEG00005007042	exosc1	96	78.075	ENSACAG00000002101	EXOSC1	96	78.075	Anolis_carolinensis
ENSMZEG00005007042	exosc1	98	80.105	ENSANAG00000034669	EXOSC1	98	80.105	Aotus_nancymaae
ENSMZEG00005007042	exosc1	100	100.000	ENSACLG00000021243	exosc1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005007042	exosc1	100	94.330	ENSAMXG00000011116	exosc1	100	94.330	Astyanax_mexicanus
ENSMZEG00005007042	exosc1	98	80.628	ENSBTAG00000012699	EXOSC1	98	80.628	Bos_taurus
ENSMZEG00005007042	exosc1	94	35.602	WBGene00012966	exos-1	92	35.602	Caenorhabditis_elegans
ENSMZEG00005007042	exosc1	98	79.581	ENSCJAG00000016586	EXOSC1	98	79.581	Callithrix_jacchus
ENSMZEG00005007042	exosc1	98	80.105	ENSCAFG00000009068	EXOSC1	92	80.105	Canis_familiaris
ENSMZEG00005007042	exosc1	98	80.105	ENSCAFG00020006002	EXOSC1	92	80.105	Canis_lupus_dingo
ENSMZEG00005007042	exosc1	98	80.628	ENSCHIG00000015253	EXOSC1	98	80.628	Capra_hircus
ENSMZEG00005007042	exosc1	98	79.058	ENSTSYG00000000760	EXOSC1	98	79.058	Carlito_syrichta
ENSMZEG00005007042	exosc1	98	80.105	ENSCPOG00000001173	EXOSC1	98	80.105	Cavia_porcellus
ENSMZEG00005007042	exosc1	97	43.590	ENSCCAG00000023986	EXOSC1	97	43.590	Cebus_capucinus
ENSMZEG00005007042	exosc1	98	80.105	ENSCATG00000034114	EXOSC1	98	80.105	Cercocebus_atys
ENSMZEG00005007042	exosc1	98	80.105	ENSCLAG00000002463	EXOSC1	98	80.105	Chinchilla_lanigera
ENSMZEG00005007042	exosc1	98	79.581	ENSCSAG00000005870	EXOSC1	98	79.581	Chlorocebus_sabaeus
ENSMZEG00005007042	exosc1	95	67.391	ENSCHOG00000006477	EXOSC1	98	67.391	Choloepus_hoffmanni
ENSMZEG00005007042	exosc1	55	67.290	ENSCPBG00000011949	EXOSC1	88	67.290	Chrysemys_picta_bellii
ENSMZEG00005007042	exosc1	99	50.777	ENSCING00000022734	-	92	50.777	Ciona_intestinalis
ENSMZEG00005007042	exosc1	99	54.404	ENSCSAVG00000010865	-	98	54.404	Ciona_savignyi
ENSMZEG00005007042	exosc1	98	80.105	ENSCANG00000034159	EXOSC1	98	80.105	Colobus_angolensis_palliatus
ENSMZEG00005007042	exosc1	98	79.058	ENSCGRG00001000335	Exosc1	98	79.058	Cricetulus_griseus_chok1gshd
ENSMZEG00005007042	exosc1	98	79.058	ENSCGRG00000011602	Exosc1	98	79.058	Cricetulus_griseus_crigri
ENSMZEG00005007042	exosc1	100	82.474	ENSCSEG00000007895	exosc1	97	82.474	Cynoglossus_semilaevis
ENSMZEG00005007042	exosc1	100	88.144	ENSCVAG00000016748	exosc1	100	88.144	Cyprinodon_variegatus
ENSMZEG00005007042	exosc1	100	94.330	ENSDARG00000059841	exosc1	100	94.330	Danio_rerio
ENSMZEG00005007042	exosc1	74	76.552	ENSDNOG00000007983	EXOSC1	98	76.552	Dasypus_novemcinctus
ENSMZEG00005007042	exosc1	98	79.581	ENSDORG00000016528	Exosc1	98	79.581	Dipodomys_ordii
ENSMZEG00005007042	exosc1	95	47.895	FBgn0032346	Csl4	92	47.895	Drosophila_melanogaster
ENSMZEG00005007042	exosc1	98	78.534	ENSETEG00000002469	-	98	78.534	Echinops_telfairi
ENSMZEG00005007042	exosc1	97	65.625	ENSEBUG00000008164	exosc1	96	65.625	Eptatretus_burgeri
ENSMZEG00005007042	exosc1	98	71.204	ENSEASG00005008684	EXOSC1	98	71.204	Equus_asinus_asinus
ENSMZEG00005007042	exosc1	60	56.034	ENSECAG00000010621	EXOSC1	69	56.034	Equus_caballus
ENSMZEG00005007042	exosc1	98	79.058	ENSEEUG00000005647	EXOSC1	98	79.058	Erinaceus_europaeus
ENSMZEG00005007042	exosc1	99	91.371	ENSELUG00000017369	exosc1	87	91.371	Esox_lucius
ENSMZEG00005007042	exosc1	98	80.628	ENSFCAG00000040563	EXOSC1	92	80.628	Felis_catus
ENSMZEG00005007042	exosc1	98	78.010	ENSFALG00000008450	EXOSC1	98	78.010	Ficedula_albicollis
ENSMZEG00005007042	exosc1	98	80.628	ENSFDAG00000000846	EXOSC1	98	80.628	Fukomys_damarensis
ENSMZEG00005007042	exosc1	100	88.660	ENSFHEG00000009154	exosc1	100	88.660	Fundulus_heteroclitus
ENSMZEG00005007042	exosc1	100	95.361	ENSGMOG00000008993	exosc1	100	95.361	Gadus_morhua
ENSMZEG00005007042	exosc1	98	65.969	ENSGALG00000039917	EXOSC1	99	84.138	Gallus_gallus
ENSMZEG00005007042	exosc1	100	88.660	ENSGAFG00000010265	exosc1	95	88.660	Gambusia_affinis
ENSMZEG00005007042	exosc1	100	93.814	ENSGACG00000018936	exosc1	100	93.814	Gasterosteus_aculeatus
ENSMZEG00005007042	exosc1	98	76.963	ENSGAGG00000019192	EXOSC1	98	76.963	Gopherus_agassizii
ENSMZEG00005007042	exosc1	98	69.110	ENSGGOG00000003099	EXOSC1	98	69.110	Gorilla_gorilla
ENSMZEG00005007042	exosc1	100	100.000	ENSHBUG00000017857	exosc1	100	100.000	Haplochromis_burtoni
ENSMZEG00005007042	exosc1	98	80.105	ENSHGLG00000016927	EXOSC1	98	80.105	Heterocephalus_glaber_female
ENSMZEG00005007042	exosc1	98	80.105	ENSHGLG00100012208	EXOSC1	98	80.105	Heterocephalus_glaber_male
ENSMZEG00005007042	exosc1	100	95.876	ENSHCOG00000019882	exosc1	100	95.876	Hippocampus_comes
ENSMZEG00005007042	exosc1	100	91.753	ENSIPUG00000007685	exosc1	100	91.753	Ictalurus_punctatus
ENSMZEG00005007042	exosc1	98	79.581	ENSSTOG00000006615	EXOSC1	98	79.581	Ictidomys_tridecemlineatus
ENSMZEG00005007042	exosc1	61	63.866	ENSSTOG00000029860	-	91	63.866	Ictidomys_tridecemlineatus
ENSMZEG00005007042	exosc1	98	80.105	ENSJJAG00000013311	Exosc1	98	80.105	Jaculus_jaculus
ENSMZEG00005007042	exosc1	100	93.814	ENSKMAG00000001202	exosc1	82	93.814	Kryptolebias_marmoratus
ENSMZEG00005007042	exosc1	100	97.938	ENSLBEG00000011448	exosc1	100	97.938	Labrus_bergylta
ENSMZEG00005007042	exosc1	95	83.221	ENSLOCG00000003776	exosc1	94	83.221	Lepisosteus_oculatus
ENSMZEG00005007042	exosc1	98	80.105	ENSLAFG00000015983	EXOSC1	98	80.105	Loxodonta_africana
ENSMZEG00005007042	exosc1	98	80.105	ENSMFAG00000001493	EXOSC1	98	80.105	Macaca_fascicularis
ENSMZEG00005007042	exosc1	98	80.105	ENSMMUG00000020028	EXOSC1	97	78.523	Macaca_mulatta
ENSMZEG00005007042	exosc1	98	80.105	ENSMNEG00000029816	EXOSC1	98	80.105	Macaca_nemestrina
ENSMZEG00005007042	exosc1	97	78.523	ENSMLEG00000027643	EXOSC1	97	78.523	Mandrillus_leucophaeus
ENSMZEG00005007042	exosc1	100	97.423	ENSMAMG00000012200	exosc1	100	97.423	Mastacembelus_armatus
ENSMZEG00005007042	exosc1	98	69.110	ENSMAUG00000020462	-	98	69.110	Mesocricetus_auratus
ENSMZEG00005007042	exosc1	98	80.105	ENSMICG00000007664	EXOSC1	97	77.852	Microcebus_murinus
ENSMZEG00005007042	exosc1	97	74.603	ENSMOCG00000017124	-	96	74.603	Microtus_ochrogaster
ENSMZEG00005007042	exosc1	98	79.058	ENSMOCG00000006004	-	98	79.058	Microtus_ochrogaster
ENSMZEG00005007042	exosc1	96	96.552	ENSMMOG00000021403	exosc1	97	96.552	Mola_mola
ENSMZEG00005007042	exosc1	98	80.208	ENSMODG00000004213	EXOSC1	98	80.208	Monodelphis_domestica
ENSMZEG00005007042	exosc1	95	96.757	ENSMALG00000007061	exosc1	93	96.757	Monopterus_albus
ENSMZEG00005007042	exosc1	98	78.534	MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	Mus_caroli
ENSMZEG00005007042	exosc1	98	78.534	ENSMUSG00000034321	Exosc1	98	78.534	Mus_musculus
ENSMZEG00005007042	exosc1	98	79.058	MGP_PahariEiJ_G0014449	Exosc1	98	79.058	Mus_pahari
ENSMZEG00005007042	exosc1	98	78.534	MGP_SPRETEiJ_G0023880	Exosc1	98	78.534	Mus_spretus
ENSMZEG00005007042	exosc1	98	80.628	ENSMPUG00000017044	EXOSC1	98	80.628	Mustela_putorius_furo
ENSMZEG00005007042	exosc1	98	80.105	ENSMLUG00000009228	EXOSC1	98	80.105	Myotis_lucifugus
ENSMZEG00005007042	exosc1	98	77.487	ENSNGAG00000022033	Exosc1	98	77.487	Nannospalax_galili
ENSMZEG00005007042	exosc1	95	100.000	ENSNBRG00000024007	exosc1	93	100.000	Neolamprologus_brichardi
ENSMZEG00005007042	exosc1	98	79.581	ENSNLEG00000013872	EXOSC1	98	79.581	Nomascus_leucogenys
ENSMZEG00005007042	exosc1	58	72.321	ENSMEUG00000002246	EXOSC1	97	72.321	Notamacropus_eugenii
ENSMZEG00005007042	exosc1	98	79.058	ENSOPRG00000005065	EXOSC1	98	79.058	Ochotona_princeps
ENSMZEG00005007042	exosc1	98	80.628	ENSODEG00000016709	EXOSC1	98	80.628	Octodon_degus
ENSMZEG00005007042	exosc1	100	98.969	ENSONIG00000017683	exosc1	99	98.969	Oreochromis_niloticus
ENSMZEG00005007042	exosc1	59	91.228	ENSOANG00000006563	EXOSC1	98	87.805	Ornithorhynchus_anatinus
ENSMZEG00005007042	exosc1	98	78.646	ENSOCUG00000011898	-	98	78.646	Oryctolagus_cuniculus
ENSMZEG00005007042	exosc1	98	74.346	ENSOCUG00000026461	-	98	74.346	Oryctolagus_cuniculus
ENSMZEG00005007042	exosc1	100	90.769	ENSORLG00000011595	exosc1	100	90.769	Oryzias_latipes
ENSMZEG00005007042	exosc1	100	90.769	ENSORLG00020005831	exosc1	100	90.769	Oryzias_latipes_hni
ENSMZEG00005007042	exosc1	100	90.256	ENSORLG00015004317	exosc1	100	90.256	Oryzias_latipes_hsok
ENSMZEG00005007042	exosc1	100	77.320	ENSOMEG00000013907	exosc1	99	77.320	Oryzias_melastigma
ENSMZEG00005007042	exosc1	98	79.581	ENSOGAG00000016259	EXOSC1	98	79.581	Otolemur_garnettii
ENSMZEG00005007042	exosc1	98	80.105	ENSOARG00000010136	EXOSC1	98	80.105	Ovis_aries
ENSMZEG00005007042	exosc1	97	78.523	ENSPPAG00000039842	EXOSC1	97	78.523	Pan_paniscus
ENSMZEG00005007042	exosc1	98	80.628	ENSPPRG00000023366	EXOSC1	98	80.628	Panthera_pardus
ENSMZEG00005007042	exosc1	98	80.628	ENSPTIG00000017701	EXOSC1	98	80.628	Panthera_tigris_altaica
ENSMZEG00005007042	exosc1	98	80.105	ENSPTRG00000002808	EXOSC1	98	80.105	Pan_troglodytes
ENSMZEG00005007042	exosc1	98	80.105	ENSPANG00000021324	EXOSC1	98	80.105	Papio_anubis
ENSMZEG00005007042	exosc1	100	91.753	ENSPKIG00000016037	exosc1	100	91.753	Paramormyrops_kingsleyae
ENSMZEG00005007042	exosc1	91	66.316	ENSPSIG00000013571	EXOSC1	98	80.165	Pelodiscus_sinensis
ENSMZEG00005007042	exosc1	100	84.021	ENSPMGG00000014002	exosc1	100	84.021	Periophthalmus_magnuspinnatus
ENSMZEG00005007042	exosc1	98	79.058	ENSPEMG00000010710	-	98	79.058	Peromyscus_maniculatus_bairdii
ENSMZEG00005007042	exosc1	95	71.505	ENSPMAG00000000195	exosc1	95	71.505	Petromyzon_marinus
ENSMZEG00005007042	exosc1	98	79.581	ENSPCIG00000002210	EXOSC1	97	79.581	Phascolarctos_cinereus
ENSMZEG00005007042	exosc1	100	88.144	ENSPFOG00000006755	exosc1	95	88.144	Poecilia_formosa
ENSMZEG00005007042	exosc1	100	88.144	ENSPLAG00000005880	exosc1	100	88.144	Poecilia_latipinna
ENSMZEG00005007042	exosc1	100	88.144	ENSPMEG00000015598	exosc1	95	88.144	Poecilia_mexicana
ENSMZEG00005007042	exosc1	100	76.289	ENSPREG00000000405	exosc1	94	76.289	Poecilia_reticulata
ENSMZEG00005007042	exosc1	98	80.105	ENSPPYG00000002531	EXOSC1	98	80.105	Pongo_abelii
ENSMZEG00005007042	exosc1	98	79.058	ENSPCAG00000009135	EXOSC1	98	79.058	Procavia_capensis
ENSMZEG00005007042	exosc1	98	73.822	ENSPCOG00000027539	EXOSC1	98	73.822	Propithecus_coquereli
ENSMZEG00005007042	exosc1	98	80.105	ENSPVAG00000003372	EXOSC1	98	80.105	Pteropus_vampyrus
ENSMZEG00005007042	exosc1	100	100.000	ENSPNYG00000021745	exosc1	100	100.000	Pundamilia_nyererei
ENSMZEG00005007042	exosc1	100	93.299	ENSPNAG00000001944	exosc1	100	93.299	Pygocentrus_nattereri
ENSMZEG00005007042	exosc1	98	79.058	ENSRNOG00000048708	Exosc1	98	79.058	Rattus_norvegicus
ENSMZEG00005007042	exosc1	98	80.105	ENSRBIG00000035618	EXOSC1	98	80.105	Rhinopithecus_bieti
ENSMZEG00005007042	exosc1	98	80.105	ENSRROG00000032589	EXOSC1	97	78.523	Rhinopithecus_roxellana
ENSMZEG00005007042	exosc1	64	38.125	YNL232W	CSL4	54	38.125	Saccharomyces_cerevisiae
ENSMZEG00005007042	exosc1	98	80.105	ENSSBOG00000000359	EXOSC1	98	80.105	Saimiri_boliviensis_boliviensis
ENSMZEG00005007042	exosc1	75	89.041	ENSSHAG00000018219	EXOSC1	99	89.041	Sarcophilus_harrisii
ENSMZEG00005007042	exosc1	100	90.206	ENSSFOG00015016289	-	100	90.206	Scleropages_formosus
ENSMZEG00005007042	exosc1	100	91.753	ENSSFOG00015009069	exosc1	100	91.753	Scleropages_formosus
ENSMZEG00005007042	exosc1	100	97.938	ENSSMAG00000003721	exosc1	100	97.938	Scophthalmus_maximus
ENSMZEG00005007042	exosc1	100	97.423	ENSSDUG00000002993	exosc1	100	97.423	Seriola_dumerili
ENSMZEG00005007042	exosc1	100	97.423	ENSSLDG00000025181	exosc1	100	97.423	Seriola_lalandi_dorsalis
ENSMZEG00005007042	exosc1	98	68.586	ENSSARG00000000162	EXOSC1	98	68.586	Sorex_araneus
ENSMZEG00005007042	exosc1	98	74.346	ENSSPUG00000012263	EXOSC1	98	74.346	Sphenodon_punctatus
ENSMZEG00005007042	exosc1	100	89.175	ENSSPAG00000016792	exosc1	83	89.175	Stegastes_partitus
ENSMZEG00005007042	exosc1	98	79.581	ENSSSCG00000010518	EXOSC1	89	79.581	Sus_scrofa
ENSMZEG00005007042	exosc1	98	77.487	ENSTGUG00000009692	EXOSC1	98	77.487	Taeniopygia_guttata
ENSMZEG00005007042	exosc1	98	84.211	ENSTRUG00000007706	exosc1	98	84.211	Takifugu_rubripes
ENSMZEG00005007042	exosc1	98	83.938	ENSTNIG00000014079	exosc1	97	83.938	Tetraodon_nigroviridis
ENSMZEG00005007042	exosc1	98	73.822	ENSTBEG00000006011	EXOSC1	98	73.822	Tupaia_belangeri
ENSMZEG00005007042	exosc1	94	81.967	ENSTTRG00000009887	EXOSC1	99	81.967	Tursiops_truncatus
ENSMZEG00005007042	exosc1	97	67.241	ENSUAMG00000010266	EXOSC1	97	67.241	Ursus_americanus
ENSMZEG00005007042	exosc1	97	67.241	ENSUMAG00000022002	EXOSC1	97	67.241	Ursus_maritimus
ENSMZEG00005007042	exosc1	98	80.105	ENSVVUG00000023192	EXOSC1	62	80.105	Vulpes_vulpes
ENSMZEG00005007042	exosc1	99	76.684	ENSXETG00000003434	exosc1	99	76.684	Xenopus_tropicalis
ENSMZEG00005007042	exosc1	62	90.083	ENSXCOG00000014499	exosc1	93	90.083	Xiphophorus_couchianus
ENSMZEG00005007042	exosc1	100	76.804	ENSXMAG00000023382	exosc1	94	76.804	Xiphophorus_maculatus