EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005007660 (Gene tree)
Gene ID: 101485290
Gene Symbol: SMARCAL1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 12758 bases
Position: chrLG16:19283126-19295883
Accession: 101485290
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005010149	ResIII	PF04851.15	4.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005010517	SMARCAL1-201	4307	XM_004555448	ENSMZEP00005010149	899 (aa)	XP_004555505	UPI000D2FD34A

Gene Model

Click here to download ENSMZEG00005007660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005007660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005007660	SMARCAL1	97	51.111	ENSG00000138375	SMARCAL1	99	67.702	Homo_sapiens
ENSMZEG00005007660	SMARCAL1	99	82.392	ENSAPOG00000020156	SMARCAL1	99	82.392	Acanthochromis_polyacanthus
ENSMZEG00005007660	SMARCAL1	93	93.228	ENSACIG00000001500	smarcal1	96	93.558	Amphilophus_citrinellus
ENSMZEG00005007660	SMARCAL1	99	82.262	ENSAOCG00000014266	SMARCAL1	100	82.151	Amphiprion_ocellaris
ENSMZEG00005007660	SMARCAL1	99	82.171	ENSAPEG00000015861	SMARCAL1	98	88.136	Amphiprion_percula
ENSMZEG00005007660	SMARCAL1	99	79.121	ENSATEG00000020624	SMARCAL1	99	79.011	Anabas_testudineus
ENSMZEG00005007660	SMARCAL1	79	63.394	ENSAPLG00000009864	SMARCAL1	75	63.115	Anas_platyrhynchos
ENSMZEG00005007660	SMARCAL1	78	65.341	ENSACAG00000004612	SMARCAL1	71	65.341	Anolis_carolinensis
ENSMZEG00005007660	SMARCAL1	100	99.889	ENSACLG00000015990	SMARCAL1	100	99.889	Astatotilapia_calliptera
ENSMZEG00005007660	SMARCAL1	99	66.446	ENSAMXG00000003350	smarcal1	99	66.009	Astyanax_mexicanus
ENSMZEG00005007660	SMARCAL1	94	65.615	ENSCPBG00000013599	SMARCAL1	70	66.522	Chrysemys_picta_bellii
ENSMZEG00005007660	SMARCAL1	71	48.125	ENSCING00000009308	-	100	48.125	Ciona_intestinalis
ENSMZEG00005007660	SMARCAL1	98	72.656	ENSCSEG00000010785	SMARCAL1	99	72.656	Cynoglossus_semilaevis
ENSMZEG00005007660	SMARCAL1	98	74.887	ENSCVAG00000018780	SMARCAL1	97	74.887	Cyprinodon_variegatus
ENSMZEG00005007660	SMARCAL1	79	46.483	ENSEBUG00000011906	SMARCAL1	72	55.258	Eptatretus_burgeri
ENSMZEG00005007660	SMARCAL1	79	75.877	ENSELUG00000010440	-	69	75.069	Esox_lucius
ENSMZEG00005007660	SMARCAL1	80	63.158	ENSFALG00000003981	SMARCAL1	71	64.826	Ficedula_albicollis
ENSMZEG00005007660	SMARCAL1	99	74.556	ENSFHEG00000008380	SMARCAL1	99	74.556	Fundulus_heteroclitus
ENSMZEG00005007660	SMARCAL1	61	75.177	ENSGMOG00000010034	smarcal1	87	75.177	Gadus_morhua
ENSMZEG00005007660	SMARCAL1	80	62.604	ENSGALG00000011475	RPL37A	73	63.239	Gallus_gallus
ENSMZEG00005007660	SMARCAL1	88	83.738	ENSGACG00000006073	SMARCAL1	100	85.475	Gasterosteus_aculeatus
ENSMZEG00005007660	SMARCAL1	93	54.978	ENSGAGG00000015660	SMARCAL1	71	67.634	Gopherus_agassizii
ENSMZEG00005007660	SMARCAL1	100	98.776	ENSHBUG00000002973	smarcal1	100	98.776	Haplochromis_burtoni
ENSMZEG00005007660	SMARCAL1	96	71.445	ENSHCOG00000017921	smarcal1	98	71.329	Hippocampus_comes
ENSMZEG00005007660	SMARCAL1	97	75.651	ENSKMAG00000012023	SMARCAL1	99	75.425	Kryptolebias_marmoratus
ENSMZEG00005007660	SMARCAL1	91	78.103	ENSLBEG00000003493	smarcal1	100	78.103	Labrus_bergylta
ENSMZEG00005007660	SMARCAL1	93	82.225	ENSLBEG00000022915	smarcal1	100	82.114	Labrus_bergylta
ENSMZEG00005007660	SMARCAL1	99	52.008	ENSLACG00000010974	SMARCAL1	74	60.900	Latimeria_chalumnae
ENSMZEG00005007660	SMARCAL1	93	65.728	ENSLOCG00000009637	smarcal1	99	65.610	Lepisosteus_oculatus
ENSMZEG00005007660	SMARCAL1	98	79.438	ENSMAMG00000000828	SMARCAL1	99	79.438	Mastacembelus_armatus
ENSMZEG00005007660	SMARCAL1	97	55.422	ENSMGAG00000011658	SMARCAL1	96	55.263	Meleagris_gallopavo
ENSMZEG00005007660	SMARCAL1	93	75.196	ENSMMOG00000003842	smarcal1	94	76.197	Mola_mola
ENSMZEG00005007660	SMARCAL1	97	51.323	ENSMODG00000015544	SMARCAL1	71	61.829	Monodelphis_domestica
ENSMZEG00005007660	SMARCAL1	93	98.559	ENSNBRG00000016273	smarcal1	96	98.829	Neolamprologus_brichardi
ENSMZEG00005007660	SMARCAL1	93	51.475	ENSMEUG00000004395	SMARCAL1	74	63.053	Notamacropus_eugenii
ENSMZEG00005007660	SMARCAL1	100	97.222	ENSONIG00000009036	smarcal1	100	97.222	Oreochromis_niloticus
ENSMZEG00005007660	SMARCAL1	99	72.818	ENSORLG00000016455	SMARCAL1	99	72.124	Oryzias_latipes
ENSMZEG00005007660	SMARCAL1	99	72.677	ENSORLG00020001610	SMARCAL1	99	71.903	Oryzias_latipes_hni
ENSMZEG00005007660	SMARCAL1	99	72.788	ENSORLG00015001865	SMARCAL1	99	72.124	Oryzias_latipes_hsok
ENSMZEG00005007660	SMARCAL1	99	74.749	ENSOMEG00000001845	smarcal1	98	74.302	Oryzias_melastigma
ENSMZEG00005007660	SMARCAL1	99	74.161	ENSPMGG00000019092	SMARCAL1	98	74.161	Periophthalmus_magnuspinnatus
ENSMZEG00005007660	SMARCAL1	77	61.095	ENSPCIG00000022514	SMARCAL1	73	61.854	Phascolarctos_cinereus
ENSMZEG00005007660	SMARCAL1	99	75.415	ENSPFOG00000000560	SMARCAL1	99	75.969	Poecilia_formosa
ENSMZEG00005007660	SMARCAL1	99	75.415	ENSPMEG00000018146	SMARCAL1	99	75.969	Poecilia_mexicana
ENSMZEG00005007660	SMARCAL1	60	86.111	ENSPREG00000009591	SMARCAL1	97	86.111	Poecilia_reticulata
ENSMZEG00005007660	SMARCAL1	97	67.460	ENSPNAG00000014900	smarcal1	91	68.027	Pygocentrus_nattereri
ENSMZEG00005007660	SMARCAL1	97	49.946	ENSSHAG00000013538	SMARCAL1	96	51.052	Sarcophilus_harrisii
ENSMZEG00005007660	SMARCAL1	99	79.515	ENSSMAG00000010427	SMARCAL1	98	79.231	Scophthalmus_maximus
ENSMZEG00005007660	SMARCAL1	98	82.327	ENSSDUG00000017470	SMARCAL1	95	82.623	Seriola_dumerili
ENSMZEG00005007660	SMARCAL1	99	81.400	ENSSLDG00000007224	SMARCAL1	99	81.510	Seriola_lalandi_dorsalis
ENSMZEG00005007660	SMARCAL1	76	67.297	ENSSPUG00000015369	SMARCAL1	69	67.297	Sphenodon_punctatus
ENSMZEG00005007660	SMARCAL1	93	88.571	ENSSPAG00000003742	smarcal1	99	77.725	Stegastes_partitus
ENSMZEG00005007660	SMARCAL1	91	52.524	ENSSSCG00000035501	SMARCAL1	76	59.078	Sus_scrofa
ENSMZEG00005007660	SMARCAL1	76	63.436	ENSTGUG00000005079	SMARCAL1	99	63.436	Taeniopygia_guttata
ENSMZEG00005007660	SMARCAL1	98	64.318	ENSTRUG00000010701	SMARCAL1	99	64.166	Takifugu_rubripes
ENSMZEG00005007660	SMARCAL1	97	45.259	ENSTTRG00000009001	SMARCAL1	96	44.706	Tursiops_truncatus
ENSMZEG00005007660	SMARCAL1	97	57.638	ENSXETG00000000465	smarcal1	74	69.054	Xenopus_tropicalis