EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005007871 (Gene tree)
Gene ID: 101485607
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 4281 bases
Position: chrLG2:29984346-29988626
Accession: 101485607
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005010433	Smg4_UPF3	PF03467.15	1e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005010804	-	2811	XM_004545766	ENSMZEP00005010433	459 (aa)	XP_004545823	UPI000D31386E

Gene Model

Click here to download ENSMZEG00005007871's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005007871's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005007871	upf3b	63	65.798	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSMZEG00005007871	upf3b	100	85.621	ENSAPOG00000012775	upf3b	100	85.185	Acanthochromis_polyacanthus
ENSMZEG00005007871	upf3b	97	58.190	ENSAMEG00000000163	UPF3B	96	56.803	Ailuropoda_melanoleuca
ENSMZEG00005007871	upf3b	92	50.346	ENSAMEG00000004259	UPF3A	50	52.766	Ailuropoda_melanoleuca
ENSMZEG00005007871	upf3b	100	83.585	ENSACIG00000013582	upf3b	100	84.665	Amphilophus_citrinellus
ENSMZEG00005007871	upf3b	100	84.096	ENSAOCG00000000706	upf3b	100	83.660	Amphiprion_ocellaris
ENSMZEG00005007871	upf3b	100	85.185	ENSAPEG00000005545	upf3b	100	84.749	Amphiprion_percula
ENSMZEG00005007871	upf3b	100	83.226	ENSATEG00000018742	upf3b	100	83.656	Anabas_testudineus
ENSMZEG00005007871	upf3b	89	51.202	ENSACAG00000001540	UPF3A	96	43.826	Anolis_carolinensis
ENSMZEG00005007871	upf3b	99	58.650	ENSACAG00000003625	UPF3B	100	56.660	Anolis_carolinensis
ENSMZEG00005007871	upf3b	97	54.936	ENSANAG00000025598	-	98	50.847	Aotus_nancymaae
ENSMZEG00005007871	upf3b	97	57.883	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSMZEG00005007871	upf3b	100	99.782	ENSACLG00000001649	upf3b	100	99.782	Astatotilapia_calliptera
ENSMZEG00005007871	upf3b	67	82.239	ENSAMXG00000000199	upf3b	98	82.239	Astyanax_mexicanus
ENSMZEG00005007871	upf3b	56	68.015	ENSBTAG00000035615	UPF3B	88	67.279	Bos_taurus
ENSMZEG00005007871	upf3b	97	57.267	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSMZEG00005007871	upf3b	97	56.182	ENSCAFG00000018426	UPF3B	98	56.739	Canis_familiaris
ENSMZEG00005007871	upf3b	97	54.013	ENSCAFG00020004074	UPF3B	96	54.565	Canis_lupus_dingo
ENSMZEG00005007871	upf3b	97	56.184	ENSCHIG00000000247	-	96	55.063	Capra_hircus
ENSMZEG00005007871	upf3b	92	40.995	ENSCHIG00000011454	-	50	48.069	Capra_hircus
ENSMZEG00005007871	upf3b	97	55.975	ENSCHIG00000018011	-	88	66.912	Capra_hircus
ENSMZEG00005007871	upf3b	97	55.724	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSMZEG00005007871	upf3b	56	50.391	ENSCCAG00000021964	-	82	50.391	Cebus_capucinus
ENSMZEG00005007871	upf3b	93	39.729	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSMZEG00005007871	upf3b	63	65.798	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSMZEG00005007871	upf3b	63	66.450	ENSCLAG00000003260	UPF3B	96	58.568	Chinchilla_lanigera
ENSMZEG00005007871	upf3b	63	63.125	ENSCSAG00000018348	UPF3B	96	55.485	Chlorocebus_sabaeus
ENSMZEG00005007871	upf3b	94	59.459	ENSCPBG00000020685	UPF3B	94	59.009	Chrysemys_picta_bellii
ENSMZEG00005007871	upf3b	56	67.647	ENSCANG00000029220	UPF3B	85	67.279	Colobus_angolensis_palliatus
ENSMZEG00005007871	upf3b	68	56.325	ENSCGRG00001013643	-	90	54.030	Cricetulus_griseus_chok1gshd
ENSMZEG00005007871	upf3b	94	54.405	ENSCGRG00001006858	-	94	55.604	Cricetulus_griseus_chok1gshd
ENSMZEG00005007871	upf3b	86	57.606	ENSCGRG00000007627	Upf3b	93	58.955	Cricetulus_griseus_crigri
ENSMZEG00005007871	upf3b	99	74.948	ENSCSEG00000002046	upf3b	99	75.420	Cynoglossus_semilaevis
ENSMZEG00005007871	upf3b	100	80.217	ENSCVAG00000005030	upf3b	100	79.783	Cyprinodon_variegatus
ENSMZEG00005007871	upf3b	94	73.624	ENSDARG00000000489	upf3b	99	69.677	Danio_rerio
ENSMZEG00005007871	upf3b	77	50.700	ENSDNOG00000034391	UPF3A	51	53.648	Dasypus_novemcinctus
ENSMZEG00005007871	upf3b	97	56.604	ENSDNOG00000008665	UPF3B	96	56.394	Dasypus_novemcinctus
ENSMZEG00005007871	upf3b	97	57.267	ENSDORG00000006077	Upf3b	94	57.333	Dipodomys_ordii
ENSMZEG00005007871	upf3b	97	56.616	ENSEASG00005012919	UPF3B	96	56.182	Equus_asinus_asinus
ENSMZEG00005007871	upf3b	97	56.616	ENSECAG00000016947	UPF3B	96	56.182	Equus_caballus
ENSMZEG00005007871	upf3b	99	67.975	ENSELUG00000020389	upf3b	100	70.515	Esox_lucius
ENSMZEG00005007871	upf3b	97	55.032	ENSFCAG00000004388	UPF3B	94	57.778	Felis_catus
ENSMZEG00005007871	upf3b	97	56.998	ENSFALG00000001569	UPF3B	94	55.975	Ficedula_albicollis
ENSMZEG00005007871	upf3b	97	57.701	ENSFDAG00000018869	UPF3B	96	57.267	Fukomys_damarensis
ENSMZEG00005007871	upf3b	100	80.303	ENSFHEG00000017895	upf3b	100	80.303	Fundulus_heteroclitus
ENSMZEG00005007871	upf3b	100	67.653	ENSGMOG00000001621	upf3b	100	67.728	Gadus_morhua
ENSMZEG00005007871	upf3b	99	56.818	ENSGALG00000008618	UPF3B	100	56.818	Gallus_gallus
ENSMZEG00005007871	upf3b	100	78.043	ENSGAFG00000000829	upf3b	100	78.696	Gambusia_affinis
ENSMZEG00005007871	upf3b	100	77.849	ENSGACG00000017435	upf3b	94	89.062	Gasterosteus_aculeatus
ENSMZEG00005007871	upf3b	94	64.045	ENSGAGG00000001219	UPF3B	94	62.838	Gopherus_agassizii
ENSMZEG00005007871	upf3b	63	65.798	ENSGGOG00000023995	UPF3B	96	57.328	Gorilla_gorilla
ENSMZEG00005007871	upf3b	100	99.346	ENSHBUG00000017393	upf3b	100	99.346	Haplochromis_burtoni
ENSMZEG00005007871	upf3b	97	57.484	ENSHGLG00000019582	-	96	56.833	Heterocephalus_glaber_female
ENSMZEG00005007871	upf3b	72	54.885	ENSHGLG00000011189	-	54	67.532	Heterocephalus_glaber_female
ENSMZEG00005007871	upf3b	97	55.531	ENSHGLG00100002042	-	96	53.017	Heterocephalus_glaber_male
ENSMZEG00005007871	upf3b	81	51.908	ENSHGLG00100001889	-	55	67.532	Heterocephalus_glaber_male
ENSMZEG00005007871	upf3b	100	72.708	ENSHCOG00000017004	upf3b	100	72.979	Hippocampus_comes
ENSMZEG00005007871	upf3b	99	70.474	ENSIPUG00000019249	upf3b	99	70.690	Ictalurus_punctatus
ENSMZEG00005007871	upf3b	97	57.701	ENSSTOG00000001101	UPF3B	96	56.587	Ictidomys_tridecemlineatus
ENSMZEG00005007871	upf3b	68	61.145	ENSJJAG00000000053	Upf3b	94	56.416	Jaculus_jaculus
ENSMZEG00005007871	upf3b	100	83.442	ENSKMAG00000020300	upf3b	100	83.878	Kryptolebias_marmoratus
ENSMZEG00005007871	upf3b	60	87.004	ENSLBEG00000028689	upf3b	59	87.313	Labrus_bergylta
ENSMZEG00005007871	upf3b	97	61.707	ENSLACG00000008691	UPF3B	98	61.388	Latimeria_chalumnae
ENSMZEG00005007871	upf3b	68	73.885	ENSLOCG00000015238	upf3b	99	66.811	Lepisosteus_oculatus
ENSMZEG00005007871	upf3b	92	53.953	ENSLOCG00000002665	upf3a	87	46.778	Lepisosteus_oculatus
ENSMZEG00005007871	upf3b	97	57.328	ENSLAFG00000001267	UPF3B	96	56.587	Loxodonta_africana
ENSMZEG00005007871	upf3b	63	65.472	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSMZEG00005007871	upf3b	87	45.792	ENSMMUG00000007449	UPF3A	50	54.585	Macaca_mulatta
ENSMZEG00005007871	upf3b	63	65.472	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSMZEG00005007871	upf3b	63	65.472	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSMZEG00005007871	upf3b	63	65.798	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSMZEG00005007871	upf3b	87	45.792	ENSMLEG00000014726	UPF3A	53	54.348	Mandrillus_leucophaeus
ENSMZEG00005007871	upf3b	85	50.495	ENSMGAG00000014837	UPF3A	95	42.356	Meleagris_gallopavo
ENSMZEG00005007871	upf3b	84	58.015	ENSMGAG00000007728	UPF3B	99	58.015	Meleagris_gallopavo
ENSMZEG00005007871	upf3b	94	53.215	ENSMAUG00000008705	Upf3b	94	54.867	Mesocricetus_auratus
ENSMZEG00005007871	upf3b	56	67.883	ENSMICG00000001743	UPF3B	85	67.279	Microcebus_murinus
ENSMZEG00005007871	upf3b	94	54.310	ENSMOCG00000017893	Upf3b	94	55.054	Microtus_ochrogaster
ENSMZEG00005007871	upf3b	100	79.393	ENSMMOG00000004183	upf3b	100	79.393	Mola_mola
ENSMZEG00005007871	upf3b	92	50.345	ENSMODG00000003159	UPF3A	53	55.603	Monodelphis_domestica
ENSMZEG00005007871	upf3b	87	62.189	ENSMODG00000010232	UPF3B	93	60.302	Monodelphis_domestica
ENSMZEG00005007871	upf3b	100	83.011	ENSMALG00000008042	upf3b	100	82.796	Monopterus_albus
ENSMZEG00005007871	upf3b	94	54.545	MGP_CAROLIEiJ_G0032999	Upf3b	94	55.752	Mus_caroli
ENSMZEG00005007871	upf3b	94	54.767	ENSMUSG00000036572	Upf3b	94	55.973	Mus_musculus
ENSMZEG00005007871	upf3b	94	54.989	MGP_PahariEiJ_G0031543	Upf3b	94	56.195	Mus_pahari
ENSMZEG00005007871	upf3b	94	54.767	MGP_SPRETEiJ_G0034152	Upf3b	94	55.973	Mus_spretus
ENSMZEG00005007871	upf3b	97	57.883	ENSMPUG00000001531	UPF3B	98	56.522	Mustela_putorius_furo
ENSMZEG00005007871	upf3b	97	57.883	ENSMLUG00000010821	UPF3B	94	58.093	Myotis_lucifugus
ENSMZEG00005007871	upf3b	87	46.437	ENSMLUG00000015905	UPF3A	54	53.617	Myotis_lucifugus
ENSMZEG00005007871	upf3b	94	55.211	ENSNGAG00000008231	Upf3b	94	54.867	Nannospalax_galili
ENSMZEG00005007871	upf3b	59	70.260	ENSNLEG00000014897	UPF3B	86	59.759	Nomascus_leucogenys
ENSMZEG00005007871	upf3b	97	56.494	ENSODEG00000002186	-	96	55.652	Octodon_degus
ENSMZEG00005007871	upf3b	100	95.474	ENSONIG00000002536	upf3b	100	95.474	Oreochromis_niloticus
ENSMZEG00005007871	upf3b	75	45.869	ENSOANG00000006985	-	55	44.348	Ornithorhynchus_anatinus
ENSMZEG00005007871	upf3b	97	55.925	ENSOCUG00000010213	UPF3B	96	55.042	Oryctolagus_cuniculus
ENSMZEG00005007871	upf3b	100	78.214	ENSORLG00000001026	upf3b	100	78.431	Oryzias_latipes
ENSMZEG00005007871	upf3b	92	49.213	ENSORLG00020014317	upf3a	89	49.206	Oryzias_latipes_hni
ENSMZEG00005007871	upf3b	100	77.778	ENSORLG00020003758	upf3b	100	77.996	Oryzias_latipes_hni
ENSMZEG00005007871	upf3b	100	77.778	ENSORLG00015012954	upf3b	100	77.996	Oryzias_latipes_hsok
ENSMZEG00005007871	upf3b	100	78.649	ENSOMEG00000014736	upf3b	100	78.867	Oryzias_melastigma
ENSMZEG00005007871	upf3b	97	46.970	ENSOMEG00000014425	upf3a	82	44.878	Oryzias_melastigma
ENSMZEG00005007871	upf3b	63	65.798	ENSOGAG00000004643	-	96	56.739	Otolemur_garnettii
ENSMZEG00005007871	upf3b	97	55.914	ENSOGAG00000033003	-	98	54.545	Otolemur_garnettii
ENSMZEG00005007871	upf3b	97	55.833	ENSOARG00000016051	-	96	54.717	Ovis_aries
ENSMZEG00005007871	upf3b	90	45.301	ENSOARG00000007869	-	55	51.282	Ovis_aries
ENSMZEG00005007871	upf3b	63	65.798	ENSPPAG00000040390	UPF3B	96	57.328	Pan_paniscus
ENSMZEG00005007871	upf3b	97	58.315	ENSPPRG00000023536	UPF3B	94	57.556	Panthera_pardus
ENSMZEG00005007871	upf3b	97	53.862	ENSPTIG00000015264	UPF3B	85	66.912	Panthera_tigris_altaica
ENSMZEG00005007871	upf3b	63	65.798	ENSPTRG00000022228	UPF3B	96	57.328	Pan_troglodytes
ENSMZEG00005007871	upf3b	63	65.798	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSMZEG00005007871	upf3b	99	67.819	ENSPKIG00000019226	upf3b	92	83.803	Paramormyrops_kingsleyae
ENSMZEG00005007871	upf3b	90	47.807	ENSPKIG00000004422	upf3a	50	57.205	Paramormyrops_kingsleyae
ENSMZEG00005007871	upf3b	92	50.350	ENSPSIG00000007468	UPF3A	55	55.459	Pelodiscus_sinensis
ENSMZEG00005007871	upf3b	57	65.283	ENSPSIG00000005833	UPF3B	86	66.393	Pelodiscus_sinensis
ENSMZEG00005007871	upf3b	56	88.281	ENSPMGG00000016067	upf3b	95	86.973	Periophthalmus_magnuspinnatus
ENSMZEG00005007871	upf3b	94	55.165	ENSPEMG00000012352	Upf3b	94	56.140	Peromyscus_maniculatus_bairdii
ENSMZEG00005007871	upf3b	89	59.466	ENSPCIG00000028914	UPF3B	83	57.538	Phascolarctos_cinereus
ENSMZEG00005007871	upf3b	77	53.812	ENSPCIG00000019590	-	64	67.808	Phascolarctos_cinereus
ENSMZEG00005007871	upf3b	93	49.206	ENSPLAG00000011960	upf3a	62	71.963	Poecilia_latipinna
ENSMZEG00005007871	upf3b	100	78.913	ENSPLAG00000005105	upf3b	100	79.565	Poecilia_latipinna
ENSMZEG00005007871	upf3b	100	78.913	ENSPLAG00000019922	upf3b	100	79.565	Poecilia_latipinna
ENSMZEG00005007871	upf3b	100	78.696	ENSPMEG00000023532	upf3b	100	79.348	Poecilia_mexicana
ENSMZEG00005007871	upf3b	56	67.399	ENSPPYG00000020675	-	82	67.033	Pongo_abelii
ENSMZEG00005007871	upf3b	97	55.274	ENSPCAG00000009464	UPF3B	96	54.757	Procavia_capensis
ENSMZEG00005007871	upf3b	97	58.369	ENSPCOG00000021960	UPF3B	85	66.912	Propithecus_coquereli
ENSMZEG00005007871	upf3b	97	47.689	ENSPVAG00000014075	UPF3B	61	55.593	Pteropus_vampyrus
ENSMZEG00005007871	upf3b	100	99.129	ENSPNYG00000009846	upf3b	100	99.129	Pundamilia_nyererei
ENSMZEG00005007871	upf3b	99	73.922	ENSPNAG00000021528	upf3b	99	86.047	Pygocentrus_nattereri
ENSMZEG00005007871	upf3b	94	54.767	ENSRNOG00000039994	Upf3b	94	55.973	Rattus_norvegicus
ENSMZEG00005007871	upf3b	88	45.854	ENSRBIG00000034007	UPF3A	52	54.585	Rhinopithecus_bieti
ENSMZEG00005007871	upf3b	63	65.798	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSMZEG00005007871	upf3b	97	57.974	ENSSBOG00000019740	UPF3B	99	65.072	Saimiri_boliviensis_boliviensis
ENSMZEG00005007871	upf3b	93	51.501	ENSSHAG00000009895	UPF3A	54	54.936	Sarcophilus_harrisii
ENSMZEG00005007871	upf3b	98	56.757	ENSSHAG00000008634	UPF3B	99	55.115	Sarcophilus_harrisii
ENSMZEG00005007871	upf3b	99	70.282	ENSSFOG00015005614	upf3b	99	69.717	Scleropages_formosus
ENSMZEG00005007871	upf3b	100	80.258	ENSSMAG00000012913	upf3b	100	90.234	Scophthalmus_maximus
ENSMZEG00005007871	upf3b	92	42.891	ENSSDUG00000009680	upf3a	55	75.281	Seriola_dumerili
ENSMZEG00005007871	upf3b	100	86.334	ENSSDUG00000005682	upf3b	100	87.202	Seriola_dumerili
ENSMZEG00005007871	upf3b	100	87.419	ENSSLDG00000003130	upf3b	100	86.985	Seriola_lalandi_dorsalis
ENSMZEG00005007871	upf3b	86	55.637	ENSSARG00000004147	UPF3B	93	58.738	Sorex_araneus
ENSMZEG00005007871	upf3b	99	56.735	ENSSPUG00000013082	UPF3B	100	55.533	Sphenodon_punctatus
ENSMZEG00005007871	upf3b	100	86.275	ENSSPAG00000009989	upf3b	100	86.710	Stegastes_partitus
ENSMZEG00005007871	upf3b	88	45.146	ENSSSCG00000024679	UPF3A	55	53.648	Sus_scrofa
ENSMZEG00005007871	upf3b	97	57.660	ENSSSCG00000012617	UPF3B	96	55.388	Sus_scrofa
ENSMZEG00005007871	upf3b	87	53.883	ENSTGUG00000009493	UPF3A	98	46.250	Taeniopygia_guttata
ENSMZEG00005007871	upf3b	90	61.871	ENSTGUG00000003413	UPF3B	96	60.671	Taeniopygia_guttata
ENSMZEG00005007871	upf3b	100	78.959	ENSTRUG00000010645	upf3b	100	78.308	Takifugu_rubripes
ENSMZEG00005007871	upf3b	100	68.103	ENSTNIG00000015763	upf3b	100	64.224	Tetraodon_nigroviridis
ENSMZEG00005007871	upf3b	94	48.712	ENSTBEG00000003229	UPF3B	74	57.509	Tupaia_belangeri
ENSMZEG00005007871	upf3b	97	55.965	ENSUAMG00000024565	UPF3B	96	54.348	Ursus_americanus
ENSMZEG00005007871	upf3b	89	53.883	ENSUMAG00000002150	UPF3B	87	54.015	Ursus_maritimus
ENSMZEG00005007871	upf3b	87	44.282	ENSVPAG00000003525	UPF3A	56	54.585	Vicugna_pacos
ENSMZEG00005007871	upf3b	84	57.500	ENSVPAG00000009971	UPF3B	95	56.219	Vicugna_pacos
ENSMZEG00005007871	upf3b	97	53.796	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSMZEG00005007871	upf3b	87	46.005	ENSXETG00000002572	upf3a	54	53.846	Xenopus_tropicalis
ENSMZEG00005007871	upf3b	94	55.204	ENSXETG00000007440	upf3b	84	74.742	Xenopus_tropicalis
ENSMZEG00005007871	upf3b	100	71.522	ENSXCOG00000016586	upf3b	97	89.744	Xiphophorus_couchianus
ENSMZEG00005007871	upf3b	100	78.043	ENSXMAG00000013680	upf3b	100	78.696	Xiphophorus_maculatus