EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005007975 (Gene tree)
Gene ID: 101470695
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 6481 bases
Position: chrLG17:25330495-25336975
Accession: 101470695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005010595	RRM_1	PF00076.22	1.3e-06	1	1
ENSMZEP00005010587	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005010967	-	1788	XM_012918368	ENSMZEP00005010595	550 (aa)	XP_012773822	UPI00032A33C8
ENSMZET00005010959	-	1896	XM_004548231	ENSMZEP00005010587	586 (aa)	XP_004548288	UPI000329FDC7

Gene Model

Click here to download ENSMZEG00005007975's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005007975's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005007975	cpsf6	94	81.453	ENSG00000111605	CPSF6	93	85.271	Homo_sapiens
ENSMZEG00005007975	cpsf6	95	41.450	ENSG00000149532	CPSF7	100	48.667	Homo_sapiens
ENSMZEG00005007975	cpsf6	100	94.774	ENSACIG00000018413	cpsf6	100	94.774	Amphilophus_citrinellus
ENSMZEG00005007975	cpsf6	100	96.364	ENSAOCG00000017865	cpsf6	100	96.364	Amphiprion_ocellaris
ENSMZEG00005007975	cpsf6	64	49.246	ENSANAG00000024635	CPSF7	69	51.955	Aotus_nancymaae
ENSMZEG00005007975	cpsf6	100	99.829	ENSACLG00000026325	cpsf6	100	99.829	Astatotilapia_calliptera
ENSMZEG00005007975	cpsf6	95	80.422	ENSAMXG00000016745	CPSF6	75	91.566	Astyanax_mexicanus
ENSMZEG00005007975	cpsf6	95	35.046	ENSBTAG00000015263	CPSF7	71	57.225	Bos_taurus
ENSMZEG00005007975	cpsf6	94	81.453	ENSCJAG00000001798	CPSF6	91	84.942	Callithrix_jacchus
ENSMZEG00005007975	cpsf6	95	41.450	ENSCJAG00000019282	CPSF7	75	64.122	Callithrix_jacchus
ENSMZEG00005007975	cpsf6	95	33.515	ENSCAFG00000016152	CPSF7	71	57.803	Canis_familiaris
ENSMZEG00005007975	cpsf6	91	80.830	ENSCAFG00000000424	CPSF6	72	81.529	Canis_familiaris
ENSMZEG00005007975	cpsf6	65	54.404	ENSCAFG00020012753	CPSF7	71	57.803	Canis_lupus_dingo
ENSMZEG00005007975	cpsf6	95	35.046	ENSCHIG00000014655	CPSF7	71	57.225	Capra_hircus
ENSMZEG00005007975	cpsf6	65	54.404	ENSTSYG00000010138	-	71	57.803	Carlito_syrichta
ENSMZEG00005007975	cpsf6	91	81.113	ENSTSYG00000008591	CPSF6	90	84.942	Carlito_syrichta
ENSMZEG00005007975	cpsf6	53	60.839	ENSCAPG00000006384	CPSF7	68	57.803	Cavia_aperea
ENSMZEG00005007975	cpsf6	57	60.839	ENSCPOG00000009980	CPSF7	71	57.803	Cavia_porcellus
ENSMZEG00005007975	cpsf6	95	34.862	ENSCCAG00000032367	CPSF7	71	57.225	Cebus_capucinus
ENSMZEG00005007975	cpsf6	94	81.453	ENSCCAG00000028149	CPSF6	91	84.231	Cebus_capucinus
ENSMZEG00005007975	cpsf6	95	41.450	ENSCATG00000042801	CPSF7	73	57.225	Cercocebus_atys
ENSMZEG00005007975	cpsf6	94	81.453	ENSCATG00000039288	CPSF6	91	84.231	Cercocebus_atys
ENSMZEG00005007975	cpsf6	57	60.839	ENSCLAG00000003174	CPSF7	71	57.225	Chinchilla_lanigera
ENSMZEG00005007975	cpsf6	95	41.450	ENSCSAG00000006414	CPSF7	73	57.225	Chlorocebus_sabaeus
ENSMZEG00005007975	cpsf6	91	81.113	ENSCANG00000037294	CPSF6	89	84.231	Colobus_angolensis_palliatus
ENSMZEG00005007975	cpsf6	95	33.455	ENSCGRG00001020382	Cpsf7	71	58.382	Cricetulus_griseus_chok1gshd
ENSMZEG00005007975	cpsf6	95	41.959	ENSCGRG00000017954	Cpsf7	73	58.382	Cricetulus_griseus_crigri
ENSMZEG00005007975	cpsf6	52	40.206	ENSCSEG00000001956	CPSF7	75	40.206	Cynoglossus_semilaevis
ENSMZEG00005007975	cpsf6	95	94.054	ENSCSEG00000008967	cpsf6	95	94.054	Cynoglossus_semilaevis
ENSMZEG00005007975	cpsf6	95	90.811	ENSCVAG00000014857	cpsf6	95	90.811	Cyprinodon_variegatus
ENSMZEG00005007975	cpsf6	70	36.036	ENSCVAG00000007392	CPSF7	81	39.153	Cyprinodon_variegatus
ENSMZEG00005007975	cpsf6	74	60.630	ENSDNOG00000018517	CPSF7	75	64.885	Dasypus_novemcinctus
ENSMZEG00005007975	cpsf6	69	80.645	ENSETEG00000002097	CPSF6	59	82.796	Echinops_telfairi
ENSMZEG00005007975	cpsf6	65	50.000	ENSETEG00000003765	CPSF7	71	56.000	Echinops_telfairi
ENSMZEG00005007975	cpsf6	94	55.166	ENSEBUG00000003540	cpsf6	67	79.167	Eptatretus_burgeri
ENSMZEG00005007975	cpsf6	65	54.404	ENSEASG00005008196	CPSF7	71	57.803	Equus_asinus_asinus
ENSMZEG00005007975	cpsf6	65	54.404	ENSFCAG00000013677	CPSF7	77	64.885	Felis_catus
ENSMZEG00005007975	cpsf6	71	46.218	ENSFALG00000011927	CPSF7	76	54.335	Ficedula_albicollis
ENSMZEG00005007975	cpsf6	95	41.220	ENSFDAG00000003919	CPSF7	71	57.803	Fukomys_damarensis
ENSMZEG00005007975	cpsf6	95	84.760	ENSFHEG00000019693	cpsf6	95	86.130	Fundulus_heteroclitus
ENSMZEG00005007975	cpsf6	53	95.954	ENSGMOG00000012951	cpsf6	53	95.954	Gadus_morhua
ENSMZEG00005007975	cpsf6	95	41.111	ENSGALG00000040962	CPSF7	63	56.647	Gallus_gallus
ENSMZEG00005007975	cpsf6	82	83.846	ENSGGOG00000008211	CPSF6	91	84.231	Gorilla_gorilla
ENSMZEG00005007975	cpsf6	100	99.829	ENSHBUG00000005998	cpsf6	100	99.829	Haplochromis_burtoni
ENSMZEG00005007975	cpsf6	88	40.688	ENSHGLG00000019090	-	73	57.803	Heterocephalus_glaber_female
ENSMZEG00005007975	cpsf6	68	54.922	ENSHGLG00100013933	-	73	57.803	Heterocephalus_glaber_male
ENSMZEG00005007975	cpsf6	94	88.123	ENSHCOG00000014555	cpsf6	95	86.250	Hippocampus_comes
ENSMZEG00005007975	cpsf6	65	54.404	ENSSTOG00000007708	CPSF7	71	57.803	Ictidomys_tridecemlineatus
ENSMZEG00005007975	cpsf6	95	41.636	ENSJJAG00000019390	Cpsf7	73	57.225	Jaculus_jaculus
ENSMZEG00005007975	cpsf6	94	93.642	ENSKMAG00000014794	cpsf6	95	93.333	Kryptolebias_marmoratus
ENSMZEG00005007975	cpsf6	95	90.941	ENSLBEG00000015762	cpsf6	95	88.810	Labrus_bergylta
ENSMZEG00005007975	cpsf6	57	40.972	ENSLBEG00000000947	CPSF7	73	41.040	Labrus_bergylta
ENSMZEG00005007975	cpsf6	93	33.586	ENSLACG00000005542	CPSF7	69	45.513	Latimeria_chalumnae
ENSMZEG00005007975	cpsf6	66	89.222	ENSLOCG00000016190	cpsf6	63	90.361	Lepisosteus_oculatus
ENSMZEG00005007975	cpsf6	65	54.922	ENSLAFG00000032084	CPSF7	71	58.382	Loxodonta_africana
ENSMZEG00005007975	cpsf6	95	34.862	ENSMFAG00000001401	CPSF7	71	57.225	Macaca_fascicularis
ENSMZEG00005007975	cpsf6	94	81.453	ENSMFAG00000045318	CPSF6	91	84.231	Macaca_fascicularis
ENSMZEG00005007975	cpsf6	95	41.450	ENSMMUG00000015280	CPSF7	73	57.225	Macaca_mulatta
ENSMZEG00005007975	cpsf6	71	87.907	ENSMMUG00000002921	CPSF6	91	83.721	Macaca_mulatta
ENSMZEG00005007975	cpsf6	95	41.450	ENSMNEG00000029585	CPSF7	73	57.225	Macaca_nemestrina
ENSMZEG00005007975	cpsf6	94	81.453	ENSMNEG00000036311	CPSF6	91	84.942	Macaca_nemestrina
ENSMZEG00005007975	cpsf6	91	81.113	ENSMLEG00000003957	CPSF6	89	84.231	Mandrillus_leucophaeus
ENSMZEG00005007975	cpsf6	95	34.862	ENSMLEG00000031269	CPSF7	69	57.225	Mandrillus_leucophaeus
ENSMZEG00005007975	cpsf6	95	91.892	ENSMAMG00000010385	cpsf6	95	89.730	Mastacembelus_armatus
ENSMZEG00005007975	cpsf6	95	43.297	ENSMGAG00000004876	CPSF7	62	58.683	Meleagris_gallopavo
ENSMZEG00005007975	cpsf6	95	33.272	ENSMAUG00000013020	Cpsf7	71	57.803	Mesocricetus_auratus
ENSMZEG00005007975	cpsf6	65	54.404	ENSMICG00000013788	CPSF7	71	57.803	Microcebus_murinus
ENSMZEG00005007975	cpsf6	82	85.328	ENSMICG00000007385	-	91	84.942	Microcebus_murinus
ENSMZEG00005007975	cpsf6	95	33.272	ENSMOCG00000000072	Cpsf7	71	57.803	Microtus_ochrogaster
ENSMZEG00005007975	cpsf6	65	52.041	ENSMODG00000020364	CPSF7	72	56.818	Monodelphis_domestica
ENSMZEG00005007975	cpsf6	75	95.855	ENSMALG00000014908	cpsf6	70	96.237	Monopterus_albus
ENSMZEG00005007975	cpsf6	95	33.272	MGP_CAROLIEiJ_G0022690	Cpsf7	71	57.803	Mus_caroli
ENSMZEG00005007975	cpsf6	95	33.272	ENSMUSG00000034820	Cpsf7	71	57.803	Mus_musculus
ENSMZEG00005007975	cpsf6	95	33.272	MGP_PahariEiJ_G0014184	Cpsf7	71	57.803	Mus_pahari
ENSMZEG00005007975	cpsf6	95	33.272	MGP_SPRETEiJ_G0023604	Cpsf7	71	57.803	Mus_spretus
ENSMZEG00005007975	cpsf6	60	53.368	ENSMPUG00000014163	CPSF7	68	56.647	Mustela_putorius_furo
ENSMZEG00005007975	cpsf6	73	78.261	ENSMLUG00000023960	-	73	77.326	Myotis_lucifugus
ENSMZEG00005007975	cpsf6	68	90.580	ENSMLUG00000028728	-	85	80.000	Myotis_lucifugus
ENSMZEG00005007975	cpsf6	95	41.636	ENSMLUG00000013278	CPSF7	73	57.803	Myotis_lucifugus
ENSMZEG00005007975	cpsf6	95	33.272	ENSNGAG00000005031	Cpsf7	71	57.803	Nannospalax_galili
ENSMZEG00005007975	cpsf6	100	99.636	ENSNBRG00000004089	cpsf6	100	99.636	Neolamprologus_brichardi
ENSMZEG00005007975	cpsf6	65	53.886	ENSNLEG00000002529	CPSF7	65	57.225	Nomascus_leucogenys
ENSMZEG00005007975	cpsf6	94	81.453	ENSNLEG00000003798	CPSF6	91	84.942	Nomascus_leucogenys
ENSMZEG00005007975	cpsf6	65	54.404	ENSMEUG00000002261	CPSF7	71	57.803	Notamacropus_eugenii
ENSMZEG00005007975	cpsf6	65	52.041	ENSODEG00000002610	CPSF7	71	57.386	Octodon_degus
ENSMZEG00005007975	cpsf6	70	89.017	ENSODEG00000004418	-	78	90.698	Octodon_degus
ENSMZEG00005007975	cpsf6	100	98.635	ENSONIG00000011702	cpsf6	100	98.635	Oreochromis_niloticus
ENSMZEG00005007975	cpsf6	95	42.018	ENSOCUG00000024726	CPSF7	71	57.225	Oryctolagus_cuniculus
ENSMZEG00005007975	cpsf6	65	35.776	ENSORLG00000006495	CPSF7	69	39.429	Oryzias_latipes
ENSMZEG00005007975	cpsf6	65	35.776	ENSORLG00020012657	CPSF7	69	39.429	Oryzias_latipes_hni
ENSMZEG00005007975	cpsf6	65	35.776	ENSORLG00015011091	CPSF7	68	39.766	Oryzias_latipes_hsok
ENSMZEG00005007975	cpsf6	69	37.069	ENSOMEG00000000539	CPSF7	73	40.462	Oryzias_melastigma
ENSMZEG00005007975	cpsf6	65	54.404	ENSOGAG00000027958	CPSF7	66	57.803	Otolemur_garnettii
ENSMZEG00005007975	cpsf6	95	36.815	ENSOARG00000012937	CPSF7	64	57.225	Ovis_aries
ENSMZEG00005007975	cpsf6	65	53.886	ENSPPAG00000028232	CPSF7	69	57.225	Pan_paniscus
ENSMZEG00005007975	cpsf6	95	38.798	ENSPPRG00000008538	CPSF7	71	57.803	Panthera_pardus
ENSMZEG00005007975	cpsf6	65	54.404	ENSPTIG00000021699	CPSF7	71	57.803	Panthera_tigris_altaica
ENSMZEG00005007975	cpsf6	85	82.378	ENSPTIG00000004079	CPSF6	52	84.942	Panthera_tigris_altaica
ENSMZEG00005007975	cpsf6	82	83.846	ENSPTRG00000005205	CPSF6	91	84.231	Pan_troglodytes
ENSMZEG00005007975	cpsf6	95	34.862	ENSPTRG00000003742	CPSF7	71	57.225	Pan_troglodytes
ENSMZEG00005007975	cpsf6	94	81.453	ENSPANG00000011641	CPSF6	91	84.231	Papio_anubis
ENSMZEG00005007975	cpsf6	93	33.271	ENSPANG00000006037	CPSF7	67	57.225	Papio_anubis
ENSMZEG00005007975	cpsf6	64	46.629	ENSPKIG00000018054	CPSF7	65	46.584	Paramormyrops_kingsleyae
ENSMZEG00005007975	cpsf6	56	78.788	ENSPSIG00000016360	CPSF6	70	81.343	Pelodiscus_sinensis
ENSMZEG00005007975	cpsf6	95	41.636	ENSPEMG00000012648	Cpsf7	73	57.803	Peromyscus_maniculatus_bairdii
ENSMZEG00005007975	cpsf6	50	42.466	ENSPMAG00000008077	-	68	49.198	Petromyzon_marinus
ENSMZEG00005007975	cpsf6	65	52.041	ENSPCIG00000002551	CPSF7	84	53.631	Phascolarctos_cinereus
ENSMZEG00005007975	cpsf6	50	82.653	ENSPFOG00000006990	cpsf6	60	92.553	Poecilia_formosa
ENSMZEG00005007975	cpsf6	94	93.064	ENSPLAG00000005715	cpsf6	95	92.432	Poecilia_latipinna
ENSMZEG00005007975	cpsf6	94	93.064	ENSPMEG00000001353	cpsf6	95	92.432	Poecilia_mexicana
ENSMZEG00005007975	cpsf6	94	90.559	ENSPREG00000004417	cpsf6	95	92.432	Poecilia_reticulata
ENSMZEG00005007975	cpsf6	95	34.862	ENSPPYG00000003188	CPSF7	71	57.225	Pongo_abelii
ENSMZEG00005007975	cpsf6	81	84.170	ENSPCOG00000024384	CPSF6	91	84.231	Propithecus_coquereli
ENSMZEG00005007975	cpsf6	65	54.404	ENSPCOG00000011976	CPSF7	71	57.803	Propithecus_coquereli
ENSMZEG00005007975	cpsf6	65	54.404	ENSPVAG00000010675	CPSF7	71	57.803	Pteropus_vampyrus
ENSMZEG00005007975	cpsf6	100	99.659	ENSPNYG00000020315	cpsf6	100	99.659	Pundamilia_nyererei
ENSMZEG00005007975	cpsf6	59	47.059	ENSPNAG00000015073	CPSF7	67	46.061	Pygocentrus_nattereri
ENSMZEG00005007975	cpsf6	95	41.636	ENSRNOG00000020668	Cpsf7	73	57.803	Rattus_norvegicus
ENSMZEG00005007975	cpsf6	95	41.450	ENSRBIG00000031429	CPSF7	77	64.122	Rhinopithecus_bieti
ENSMZEG00005007975	cpsf6	82	83.846	ENSRBIG00000042827	CPSF6	91	84.231	Rhinopithecus_bieti
ENSMZEG00005007975	cpsf6	95	34.862	ENSRROG00000045009	CPSF7	71	57.225	Rhinopithecus_roxellana
ENSMZEG00005007975	cpsf6	94	81.453	ENSRROG00000042758	CPSF6	91	84.942	Rhinopithecus_roxellana
ENSMZEG00005007975	cpsf6	85	80.679	ENSSBOG00000010652	CPSF6	90	84.231	Saimiri_boliviensis_boliviensis
ENSMZEG00005007975	cpsf6	95	34.862	ENSSBOG00000018431	CPSF7	71	57.225	Saimiri_boliviensis_boliviensis
ENSMZEG00005007975	cpsf6	62	54.404	ENSSHAG00000011964	CPSF7	68	57.803	Sarcophilus_harrisii
ENSMZEG00005007975	cpsf6	62	43.333	ENSSFOG00015010288	cpsf7	73	41.379	Scleropages_formosus
ENSMZEG00005007975	cpsf6	55	94.375	ENSSMAG00000000471	cpsf6	95	89.369	Scophthalmus_maximus
ENSMZEG00005007975	cpsf6	100	97.273	ENSSDUG00000005024	cpsf6	100	97.273	Seriola_dumerili
ENSMZEG00005007975	cpsf6	100	97.273	ENSSLDG00000009042	cpsf6	100	97.273	Seriola_lalandi_dorsalis
ENSMZEG00005007975	cpsf6	85	87.402	ENSSARG00000006743	CPSF6	75	88.976	Sorex_araneus
ENSMZEG00005007975	cpsf6	65	53.846	ENSSPUG00000019344	CPSF7	73	57.803	Sphenodon_punctatus
ENSMZEG00005007975	cpsf6	100	96.727	ENSSPAG00000013906	cpsf6	100	96.727	Stegastes_partitus
ENSMZEG00005007975	cpsf6	74	60.630	ENSSSCG00000013083	CPSF7	75	64.885	Sus_scrofa
ENSMZEG00005007975	cpsf6	63	50.000	ENSTGUG00000006513	CPSF7	71	54.070	Taeniopygia_guttata
ENSMZEG00005007975	cpsf6	60	53.886	ENSTTRG00000011085	CPSF7	69	57.803	Tursiops_truncatus
ENSMZEG00005007975	cpsf6	85	80.679	ENSUAMG00000023492	CPSF6	52	84.942	Ursus_americanus
ENSMZEG00005007975	cpsf6	65	54.404	ENSUAMG00000017809	CPSF7	71	57.803	Ursus_americanus
ENSMZEG00005007975	cpsf6	95	41.852	ENSUMAG00000011825	CPSF7	73	57.803	Ursus_maritimus
ENSMZEG00005007975	cpsf6	85	80.679	ENSUMAG00000020779	CPSF6	65	92.121	Ursus_maritimus
ENSMZEG00005007975	cpsf6	74	60.630	ENSVVUG00000004939	CPSF7	75	64.885	Vulpes_vulpes
ENSMZEG00005007975	cpsf6	97	42.202	ENSXETG00000006715	cpsf7	65	52.353	Xenopus_tropicalis
ENSMZEG00005007975	cpsf6	94	92.678	ENSXCOG00000013423	cpsf6	94	92.678	Xiphophorus_couchianus
ENSMZEG00005007975	cpsf6	55	92.570	ENSXMAG00000003459	cpsf6	95	92.252	Xiphophorus_maculatus