EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005008032 (Gene tree)
Gene ID: 101477203
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 3886 bases
Position: chrLG5:5261608-5265493
Accession: 101477203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005010679	RRM_1	PF00076.22	1.4e-31	1	2
ENSMZEP00005010679	RRM_1	PF00076.22	1.4e-31	2	2
ENSMZEP00005010679	RRM_3	PF08777.11	2.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005011054	-	951	XM_004559927	ENSMZEP00005010679	316 (aa)	XP_004559984	-

Gene Model

Click here to download ENSMZEG00005008032's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG
mze05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005008032's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005008032	-	57	83.696	ENSG00000124193	SRSF6	56	89.474	Homo_sapiens
ENSMZEG00005008032	-	57	69.730	ENSAMEG00000003710	SRSF6	63	62.500	Ailuropoda_melanoleuca
ENSMZEG00005008032	-	96	62.338	ENSACIG00000023658	-	71	74.123	Amphilophus_citrinellus
ENSMZEG00005008032	-	100	88.000	ENSACIG00000020091	-	100	88.923	Amphilophus_citrinellus
ENSMZEG00005008032	-	100	86.751	ENSAOCG00000004309	-	100	86.154	Amphiprion_ocellaris
ENSMZEG00005008032	-	100	70.405	ENSAPEG00000020746	-	84	78.750	Amphiprion_percula
ENSMZEG00005008032	-	57	87.027	ENSAPEG00000013086	-	61	72.458	Amphiprion_percula
ENSMZEG00005008032	-	56	96.067	ENSATEG00000007255	-	71	90.164	Anabas_testudineus
ENSMZEG00005008032	-	57	86.188	ENSACAG00000002061	SRSF6	66	76.856	Anolis_carolinensis
ENSMZEG00005008032	-	57	83.696	ENSANAG00000024080	SRSF6	56	89.474	Aotus_nancymaae
ENSMZEG00005008032	-	56	84.946	ENSAMXG00000003101	-	67	59.603	Astyanax_mexicanus
ENSMZEG00005008032	-	57	81.720	ENSAMXG00000042692	-	96	80.000	Astyanax_mexicanus
ENSMZEG00005008032	-	57	84.239	ENSBTAG00000008527	SRSF6	56	90.789	Bos_taurus
ENSMZEG00005008032	-	57	83.696	ENSCJAG00000048403	SRSF6	79	71.861	Callithrix_jacchus
ENSMZEG00005008032	-	57	84.239	ENSCAFG00000009289	SRSF6	56	90.789	Canis_familiaris
ENSMZEG00005008032	-	57	84.239	ENSCAFG00020013559	SRSF6	56	90.789	Canis_lupus_dingo
ENSMZEG00005008032	-	57	83.696	ENSCHIG00000009148	-	62	71.861	Capra_hircus
ENSMZEG00005008032	-	57	84.239	ENSCHIG00000015890	-	56	90.789	Capra_hircus
ENSMZEG00005008032	-	57	63.889	ENSTSYG00000026476	SRSF6	56	54.626	Carlito_syrichta
ENSMZEG00005008032	-	57	78.261	ENSCPOG00000011761	SRSF6	56	89.474	Cavia_porcellus
ENSMZEG00005008032	-	69	64.126	ENSCCAG00000018540	-	60	72.826	Cebus_capucinus
ENSMZEG00005008032	-	57	83.696	ENSCCAG00000026018	-	56	89.474	Cebus_capucinus
ENSMZEG00005008032	-	57	83.696	ENSCATG00000030794	SRSF6	56	89.474	Cercocebus_atys
ENSMZEG00005008032	-	57	83.696	ENSCSAG00000014022	SRSF6	63	71.861	Chlorocebus_sabaeus
ENSMZEG00005008032	-	57	83.422	ENSCPBG00000018200	SRSF6	68	76.496	Chrysemys_picta_bellii
ENSMZEG00005008032	-	57	82.609	ENSCANG00000037774	-	63	70.996	Colobus_angolensis_palliatus
ENSMZEG00005008032	-	57	63.889	ENSCANG00000042529	-	56	54.626	Colobus_angolensis_palliatus
ENSMZEG00005008032	-	57	83.696	ENSCGRG00001022339	Srsf6	56	89.474	Cricetulus_griseus_chok1gshd
ENSMZEG00005008032	-	57	81.006	ENSDARG00000013729	srsf6a	56	75.771	Danio_rerio
ENSMZEG00005008032	-	57	82.888	ENSDARG00000016783	srsf6b	80	92.105	Danio_rerio
ENSMZEG00005008032	-	57	83.696	ENSDNOG00000008410	SRSF6	62	71.861	Dasypus_novemcinctus
ENSMZEG00005008032	-	57	83.696	ENSDORG00000028378	Srsf6	56	89.474	Dipodomys_ordii
ENSMZEG00005008032	-	57	80.328	ENSETEG00000006221	SRSF6	62	68.261	Echinops_telfairi
ENSMZEG00005008032	-	57	84.239	ENSEASG00005023429	SRSF6	63	72.294	Equus_asinus_asinus
ENSMZEG00005008032	-	57	84.239	ENSECAG00000023932	SRSF6	66	72.294	Equus_caballus
ENSMZEG00005008032	-	56	88.827	ENSELUG00000013506	SRSF6	68	93.421	Esox_lucius
ENSMZEG00005008032	-	57	88.172	ENSELUG00000024182	SRSF6	90	81.301	Esox_lucius
ENSMZEG00005008032	-	57	84.239	ENSFCAG00000032814	SRSF6	63	72.294	Felis_catus
ENSMZEG00005008032	-	57	63.889	ENSFDAG00000012191	SRSF6	56	54.626	Fukomys_damarensis
ENSMZEG00005008032	-	98	67.610	ENSFHEG00000023065	srsf6a	66	75.527	Fundulus_heteroclitus
ENSMZEG00005008032	-	55	74.857	ENSGMOG00000006105	srsf6a	80	62.771	Gadus_morhua
ENSMZEG00005008032	-	56	88.333	ENSGMOG00000014458	srsf6a	66	79.835	Gadus_morhua
ENSMZEG00005008032	-	57	82.353	ENSGALG00000000990	SRSF6	56	89.474	Gallus_gallus
ENSMZEG00005008032	-	57	84.530	ENSGACG00000006084	srsf6a	92	59.403	Gasterosteus_aculeatus
ENSMZEG00005008032	-	57	83.422	ENSGAGG00000003238	SRSF6	68	76.496	Gopherus_agassizii
ENSMZEG00005008032	-	57	83.696	ENSGGOG00000009808	SRSF6	56	89.474	Gorilla_gorilla
ENSMZEG00005008032	-	100	94.340	ENSHBUG00000006386	-	100	93.396	Haplochromis_burtoni
ENSMZEG00005008032	-	59	68.229	ENSHGLG00000007701	-	57	65.363	Heterocephalus_glaber_female
ENSMZEG00005008032	-	57	63.889	ENSHGLG00100005043	SRSF6	56	54.626	Heterocephalus_glaber_male
ENSMZEG00005008032	-	57	83.240	ENSHCOG00000002740	srsf6a	68	74.359	Hippocampus_comes
ENSMZEG00005008032	-	54	86.047	ENSIPUG00000016856	SRSF6	61	74.667	Ictalurus_punctatus
ENSMZEG00005008032	-	57	84.324	ENSIPUG00000004776	-	80	77.253	Ictalurus_punctatus
ENSMZEG00005008032	-	57	83.696	ENSSTOG00000010866	SRSF6	56	89.474	Ictidomys_tridecemlineatus
ENSMZEG00005008032	-	100	59.639	ENSKMAG00000011934	srsf6a	100	60.802	Kryptolebias_marmoratus
ENSMZEG00005008032	-	56	85.870	ENSLBEG00000007356	srsf6a	69	75.000	Labrus_bergylta
ENSMZEG00005008032	-	56	78.090	ENSLACG00000009389	-	54	66.792	Latimeria_chalumnae
ENSMZEG00005008032	-	95	64.516	ENSLACG00000005466	SRSF6	70	80.085	Latimeria_chalumnae
ENSMZEG00005008032	-	57	83.696	ENSMFAG00000036925	SRSF6	56	89.474	Macaca_fascicularis
ENSMZEG00005008032	-	57	83.696	ENSMMUG00000006742	SRSF6	56	89.474	Macaca_mulatta
ENSMZEG00005008032	-	57	83.152	ENSMNEG00000027392	-	56	88.158	Macaca_nemestrina
ENSMZEG00005008032	-	57	83.152	ENSMNEG00000038270	-	69	75.000	Macaca_nemestrina
ENSMZEG00005008032	-	100	62.975	ENSMZEG00005020658	-	71	68.534	Maylandia_zebra
ENSMZEG00005008032	-	57	83.152	ENSMICG00000008537	SRSF6	96	60.606	Microcebus_murinus
ENSMZEG00005008032	-	57	83.243	ENSMODG00000003107	SRSF6	70	76.371	Monodelphis_domestica
ENSMZEG00005008032	-	57	83.696	MGP_CAROLIEiJ_G0024606	Srsf6	56	89.474	Mus_caroli
ENSMZEG00005008032	-	57	83.696	ENSMUSG00000016921	Srsf6	56	89.474	Mus_musculus
ENSMZEG00005008032	-	57	83.696	MGP_PahariEiJ_G0026050	Srsf6	56	89.474	Mus_pahari
ENSMZEG00005008032	-	57	83.696	MGP_SPRETEiJ_G0025528	Srsf6	56	89.474	Mus_spretus
ENSMZEG00005008032	-	57	84.239	ENSMPUG00000017692	SRSF6	75	72.294	Mustela_putorius_furo
ENSMZEG00005008032	-	57	58.454	ENSMLUG00000016618	SRSF6	62	51.181	Myotis_lucifugus
ENSMZEG00005008032	-	57	83.696	ENSNGAG00000017560	Srsf6	56	89.474	Nannospalax_galili
ENSMZEG00005008032	-	56	86.339	ENSNBRG00000001846	-	65	76.569	Neolamprologus_brichardi
ENSMZEG00005008032	-	100	94.340	ENSNBRG00000014709	-	100	93.396	Neolamprologus_brichardi
ENSMZEG00005008032	-	57	83.696	ENSNLEG00000006524	SRSF6	56	89.474	Nomascus_leucogenys
ENSMZEG00005008032	-	57	83.243	ENSMEUG00000014615	SRSF6	71	71.983	Notamacropus_eugenii
ENSMZEG00005008032	-	56	86.885	ENSONIG00000001925	-	68	76.955	Oreochromis_niloticus
ENSMZEG00005008032	-	100	89.412	ENSONIG00000020247	-	100	89.412	Oreochromis_niloticus
ENSMZEG00005008032	-	57	68.063	ENSOCUG00000009785	-	73	57.806	Oryctolagus_cuniculus
ENSMZEG00005008032	-	55	54.286	ENSOCUG00000023999	-	81	47.321	Oryctolagus_cuniculus
ENSMZEG00005008032	-	57	74.444	ENSOMEG00000006001	srsf6a	60	71.806	Oryzias_melastigma
ENSMZEG00005008032	-	57	83.152	ENSOGAG00000014468	SRSF6	92	64.890	Otolemur_garnettii
ENSMZEG00005008032	-	57	82.514	ENSOARG00000003117	SRSF6	62	69.130	Ovis_aries
ENSMZEG00005008032	-	57	71.667	ENSPPAG00000043131	-	68	63.043	Pan_paniscus
ENSMZEG00005008032	-	57	83.152	ENSPPAG00000034327	-	62	70.996	Pan_paniscus
ENSMZEG00005008032	-	57	84.239	ENSPPRG00000008917	SRSF6	63	72.294	Panthera_pardus
ENSMZEG00005008032	-	57	83.696	ENSPTRG00000044686	-	56	89.474	Pan_troglodytes
ENSMZEG00005008032	-	57	71.667	ENSPTRG00000046274	-	68	63.043	Pan_troglodytes
ENSMZEG00005008032	-	57	83.696	ENSPANG00000035224	SRSF6	56	89.474	Papio_anubis
ENSMZEG00005008032	-	94	67.192	ENSPKIG00000018463	-	75	90.789	Paramormyrops_kingsleyae
ENSMZEG00005008032	-	55	74.157	ENSPKIG00000015703	-	84	67.857	Paramormyrops_kingsleyae
ENSMZEG00005008032	-	95	71.338	ENSPMGG00000014963	srsf6a	65	75.847	Periophthalmus_magnuspinnatus
ENSMZEG00005008032	-	57	83.243	ENSPCIG00000003820	SRSF6	70	76.371	Phascolarctos_cinereus
ENSMZEG00005008032	-	57	87.931	ENSPFOG00000006437	srsf6a	69	68.045	Poecilia_formosa
ENSMZEG00005008032	-	98	62.722	ENSPLAG00000009243	srsf6a	80	78.740	Poecilia_latipinna
ENSMZEG00005008032	-	57	83.696	ENSPMEG00000006042	SRSF6	66	76.695	Poecilia_mexicana
ENSMZEG00005008032	-	57	83.696	ENSPPYG00000011019	SRSF6	63	71.861	Pongo_abelii
ENSMZEG00005008032	-	57	84.239	ENSPCAG00000010954	SRSF6	65	72.294	Procavia_capensis
ENSMZEG00005008032	-	57	83.152	ENSPCOG00000026364	SRSF6	56	89.474	Propithecus_coquereli
ENSMZEG00005008032	-	57	83.696	ENSPVAG00000015232	SRSF6	63	71.861	Pteropus_vampyrus
ENSMZEG00005008032	-	100	94.654	ENSPNYG00000004944	-	100	93.711	Pundamilia_nyererei
ENSMZEG00005008032	-	56	86.339	ENSPNYG00000011272	-	94	64.327	Pundamilia_nyererei
ENSMZEG00005008032	-	57	83.696	ENSRNOG00000006380	Srsf6	63	71.861	Rattus_norvegicus
ENSMZEG00005008032	-	57	84.444	ENSRBIG00000041414	SRSF6	58	89.474	Rhinopithecus_bieti
ENSMZEG00005008032	-	57	83.696	ENSRROG00000029989	SRSF6	56	89.474	Rhinopithecus_roxellana
ENSMZEG00005008032	-	56	70.950	ENSSBOG00000034078	-	58	64.390	Saimiri_boliviensis_boliviensis
ENSMZEG00005008032	-	57	83.696	ENSSBOG00000033708	-	56	89.474	Saimiri_boliviensis_boliviensis
ENSMZEG00005008032	-	57	83.243	ENSSHAG00000012805	SRSF6	68	76.724	Sarcophilus_harrisii
ENSMZEG00005008032	-	81	70.155	ENSSFOG00015015169	SRSF6	82	70.635	Scleropages_formosus
ENSMZEG00005008032	-	56	83.420	ENSSFOG00015019681	-	81	67.785	Scleropages_formosus
ENSMZEG00005008032	-	96	79.245	ENSSMAG00000017447	-	72	86.076	Scophthalmus_maximus
ENSMZEG00005008032	-	70	68.444	ENSSMAG00000014819	-	54	74.468	Scophthalmus_maximus
ENSMZEG00005008032	-	57	86.486	ENSSDUG00000016097	srsf6a	100	64.756	Seriola_dumerili
ENSMZEG00005008032	-	57	86.486	ENSSLDG00000022841	srsf6a	97	65.179	Seriola_lalandi_dorsalis
ENSMZEG00005008032	-	57	87.293	ENSSPUG00000004967	SRSF6	56	89.474	Sphenodon_punctatus
ENSMZEG00005008032	-	85	71.071	ENSSPAG00000002362	srsf6a	66	82.979	Stegastes_partitus
ENSMZEG00005008032	-	57	84.239	ENSSSCG00000007362	SRSF6	71	72.294	Sus_scrofa
ENSMZEG00005008032	-	57	83.696	ENSTGUG00000003455	SRSF6	53	83.152	Taeniopygia_guttata
ENSMZEG00005008032	-	97	72.115	ENSTNIG00000001692	srsf6a	73	80.252	Tetraodon_nigroviridis
ENSMZEG00005008032	-	57	84.239	ENSUAMG00000003559	SRSF6	56	90.789	Ursus_americanus
ENSMZEG00005008032	-	57	85.635	ENSXMAG00000021849	srsf6a	55	85.635	Xiphophorus_maculatus