EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005008639 (Gene tree)
Gene ID: 101478884
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 3958 bases
Position: chrLG4:11195701-11199658
Accession: 101478884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005011512	RRM_1	PF00076.22	1.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005011912	-	2170	XM_004560677	ENSMZEP00005011512	273 (aa)	XP_004560734	UPI000329C197

Gene Model

Click here to download ENSMZEG00005008639's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG
mze03040	Spliceosome	KEGG
mze05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005008639's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005008639	alyref	100	53.430	ENSAPOG00000000183	-	100	51.986	Acanthochromis_polyacanthus
ENSMZEG00005008639	alyref	100	51.761	ENSACIG00000020351	-	100	51.408	Amphilophus_citrinellus
ENSMZEG00005008639	alyref	99	84.191	ENSACIG00000006351	alyref	98	86.496	Amphilophus_citrinellus
ENSMZEG00005008639	alyref	100	51.625	ENSAOCG00000019305	-	100	50.903	Amphiprion_ocellaris
ENSMZEG00005008639	alyref	100	89.011	ENSAOCG00000014012	alyref	100	87.912	Amphiprion_ocellaris
ENSMZEG00005008639	alyref	100	89.011	ENSAPEG00000014603	alyref	100	87.912	Amphiprion_percula
ENSMZEG00005008639	alyref	100	53.069	ENSAPEG00000013527	-	100	50.903	Amphiprion_percula
ENSMZEG00005008639	alyref	100	55.396	ENSATEG00000000382	-	100	52.708	Anabas_testudineus
ENSMZEG00005008639	alyref	100	78.058	ENSATEG00000004307	alyref	100	82.014	Anabas_testudineus
ENSMZEG00005008639	alyref	51	72.340	ENSAPLG00000014745	-	100	70.213	Anas_platyrhynchos
ENSMZEG00005008639	alyref	100	100.000	ENSACLG00000008432	alyref	100	100.000	Astatotilapia_calliptera
ENSMZEG00005008639	alyref	100	54.610	ENSACLG00000010184	-	100	52.669	Astatotilapia_calliptera
ENSMZEG00005008639	alyref	99	75.180	ENSAMXG00000007359	alyref	100	73.665	Astyanax_mexicanus
ENSMZEG00005008639	alyref	99	47.253	ENSCING00000013568	-	99	46.014	Ciona_intestinalis
ENSMZEG00005008639	alyref	99	43.682	ENSCSAVG00000003324	-	99	41.241	Ciona_savignyi
ENSMZEG00005008639	alyref	100	78.909	ENSCSEG00000017800	alyref	100	81.685	Cynoglossus_semilaevis
ENSMZEG00005008639	alyref	100	49.091	ENSCVAG00000007789	-	100	46.237	Cyprinodon_variegatus
ENSMZEG00005008639	alyref	100	89.377	ENSCVAG00000014869	alyref	100	80.952	Cyprinodon_variegatus
ENSMZEG00005008639	alyref	100	77.739	ENSDARG00000077732	alyref	100	73.498	Danio_rerio
ENSMZEG00005008639	alyref	97	45.833	FBgn0010774	Ref1	73	45.192	Drosophila_melanogaster
ENSMZEG00005008639	alyref	99	51.111	ENSEBUG00000008253	alyref	95	50.000	Eptatretus_burgeri
ENSMZEG00005008639	alyref	72	46.305	ENSEBUG00000006305	alyref	100	39.223	Eptatretus_burgeri
ENSMZEG00005008639	alyref	100	70.968	ENSELUG00000008849	-	100	62.724	Esox_lucius
ENSMZEG00005008639	alyref	100	71.377	ENSELUG00000017178	alyref	100	67.266	Esox_lucius
ENSMZEG00005008639	alyref	59	77.019	ENSFALG00000011923	-	96	73.248	Ficedula_albicollis
ENSMZEG00005008639	alyref	100	46.909	ENSFHEG00000004698	-	100	45.455	Fundulus_heteroclitus
ENSMZEG00005008639	alyref	100	82.847	ENSFHEG00000019426	alyref	100	81.752	Fundulus_heteroclitus
ENSMZEG00005008639	alyref	69	56.585	ENSGMOG00000013122	-	100	58.854	Gadus_morhua
ENSMZEG00005008639	alyref	100	69.818	ENSGMOG00000009882	alyref	100	67.273	Gadus_morhua
ENSMZEG00005008639	alyref	100	45.035	ENSGAFG00000007573	-	76	48.485	Gambusia_affinis
ENSMZEG00005008639	alyref	100	83.755	ENSGAFG00000006014	alyref	100	76.173	Gambusia_affinis
ENSMZEG00005008639	alyref	100	54.577	ENSHBUG00000001454	-	100	53.025	Haplochromis_burtoni
ENSMZEG00005008639	alyref	100	100.000	ENSHBUG00000020196	alyref	100	100.000	Haplochromis_burtoni
ENSMZEG00005008639	alyref	98	48.339	ENSHCOG00000012825	-	94	45.522	Hippocampus_comes
ENSMZEG00005008639	alyref	100	72.043	ENSIPUG00000009469	alyref	100	70.609	Ictalurus_punctatus
ENSMZEG00005008639	alyref	75	63.462	ENSSTOG00000016570	-	100	58.373	Ictidomys_tridecemlineatus
ENSMZEG00005008639	alyref	100	80.364	ENSKMAG00000008912	alyref	100	81.818	Kryptolebias_marmoratus
ENSMZEG00005008639	alyref	100	50.725	ENSKMAG00000006462	-	100	49.275	Kryptolebias_marmoratus
ENSMZEG00005008639	alyref	100	49.829	ENSLBEG00000005387	-	66	54.040	Labrus_bergylta
ENSMZEG00005008639	alyref	100	85.252	ENSLBEG00000023118	alyref	90	84.892	Labrus_bergylta
ENSMZEG00005008639	alyref	99	48.375	ENSLBEG00000012930	-	99	46.715	Labrus_bergylta
ENSMZEG00005008639	alyref	78	73.853	ENSLOCG00000013879	alyref	89	69.124	Lepisosteus_oculatus
ENSMZEG00005008639	alyref	100	51.449	ENSMAMG00000005464	-	100	49.458	Mastacembelus_armatus
ENSMZEG00005008639	alyref	100	85.348	ENSMAMG00000003034	alyref	100	83.516	Mastacembelus_armatus
ENSMZEG00005008639	alyref	100	53.901	ENSMZEG00005012096	-	100	52.313	Maylandia_zebra
ENSMZEG00005008639	alyref	99	47.059	ENSMMOG00000007032	-	98	44.406	Mola_mola
ENSMZEG00005008639	alyref	99	84.074	ENSMMOG00000012458	alyref	97	81.319	Mola_mola
ENSMZEG00005008639	alyref	100	51.773	ENSMALG00000006054	-	100	48.387	Monopterus_albus
ENSMZEG00005008639	alyref	100	59.286	ENSMLUG00000014372	-	100	57.500	Myotis_lucifugus
ENSMZEG00005008639	alyref	98	54.093	ENSMLUG00000028605	-	98	53.405	Myotis_lucifugus
ENSMZEG00005008639	alyref	98	57.401	ENSMLUG00000030671	-	99	51.957	Myotis_lucifugus
ENSMZEG00005008639	alyref	100	58.865	ENSMLUG00000004098	-	100	57.509	Myotis_lucifugus
ENSMZEG00005008639	alyref	98	54.244	ENSMLUG00000009247	-	98	51.661	Myotis_lucifugus
ENSMZEG00005008639	alyref	98	56.985	ENSMLUG00000022178	-	98	52.941	Myotis_lucifugus
ENSMZEG00005008639	alyref	98	54.577	ENSMLUG00000022467	-	98	51.613	Myotis_lucifugus
ENSMZEG00005008639	alyref	100	57.801	ENSMLUG00000006521	-	100	56.738	Myotis_lucifugus
ENSMZEG00005008639	alyref	100	69.231	ENSNGAG00000022014	-	100	62.637	Nannospalax_galili
ENSMZEG00005008639	alyref	100	54.286	ENSNBRG00000017460	-	100	53.405	Neolamprologus_brichardi
ENSMZEG00005008639	alyref	100	98.545	ENSNBRG00000001747	alyref	100	98.545	Neolamprologus_brichardi
ENSMZEG00005008639	alyref	100	97.482	ENSONIG00000019434	alyref	100	97.482	Oreochromis_niloticus
ENSMZEG00005008639	alyref	100	56.679	ENSONIG00000003296	-	100	55.957	Oreochromis_niloticus
ENSMZEG00005008639	alyref	99	41.346	ENSORLG00000001620	-	58	46.226	Oryzias_latipes
ENSMZEG00005008639	alyref	100	87.273	ENSORLG00020011942	alyref	100	86.182	Oryzias_latipes_hni
ENSMZEG00005008639	alyref	100	48.364	ENSORLG00020015673	-	100	43.537	Oryzias_latipes_hni
ENSMZEG00005008639	alyref	100	89.744	ENSORLG00015022664	alyref	100	87.546	Oryzias_latipes_hsok
ENSMZEG00005008639	alyref	100	48.746	ENSORLG00015015143	-	100	46.570	Oryzias_latipes_hsok
ENSMZEG00005008639	alyref	100	88.686	ENSOMEG00000019176	alyref	100	82.847	Oryzias_melastigma
ENSMZEG00005008639	alyref	99	49.446	ENSOMEG00000007158	-	97	44.485	Oryzias_melastigma
ENSMZEG00005008639	alyref	70	74.211	ENSPPAG00000036403	-	68	69.474	Pan_paniscus
ENSMZEG00005008639	alyref	100	75.000	ENSPKIG00000007070	alyref	100	70.652	Paramormyrops_kingsleyae
ENSMZEG00005008639	alyref	99	70.696	ENSPKIG00000006233	-	81	64.964	Paramormyrops_kingsleyae
ENSMZEG00005008639	alyref	99	80.147	ENSPMGG00000016600	alyref	91	78.388	Periophthalmus_magnuspinnatus
ENSMZEG00005008639	alyref	71	47.475	ENSPMGG00000012994	-	97	46.154	Periophthalmus_magnuspinnatus
ENSMZEG00005008639	alyref	100	64.469	ENSPEMG00000016628	-	100	57.348	Peromyscus_maniculatus_bairdii
ENSMZEG00005008639	alyref	100	81.295	ENSPFOG00000022825	alyref	99	80.935	Poecilia_formosa
ENSMZEG00005008639	alyref	100	46.786	ENSPFOG00000017094	-	100	44.727	Poecilia_formosa
ENSMZEG00005008639	alyref	100	81.949	ENSPLAG00000006948	alyref	100	81.227	Poecilia_latipinna
ENSMZEG00005008639	alyref	100	46.786	ENSPLAG00000014380	-	100	44.727	Poecilia_latipinna
ENSMZEG00005008639	alyref	100	81.295	ENSPMEG00000003547	alyref	100	80.935	Poecilia_mexicana
ENSMZEG00005008639	alyref	100	46.786	ENSPMEG00000023039	-	100	44.727	Poecilia_mexicana
ENSMZEG00005008639	alyref	100	48.188	ENSPREG00000003649	-	100	45.421	Poecilia_reticulata
ENSMZEG00005008639	alyref	100	82.310	ENSPREG00000015795	alyref	100	81.588	Poecilia_reticulata
ENSMZEG00005008639	alyref	100	100.000	ENSPNYG00000017498	alyref	100	100.000	Pundamilia_nyererei
ENSMZEG00005008639	alyref	99	52.708	ENSPNYG00000002879	-	98	51.449	Pundamilia_nyererei
ENSMZEG00005008639	alyref	100	74.460	ENSPNAG00000002531	alyref	100	72.924	Pygocentrus_nattereri
ENSMZEG00005008639	alyref	81	68.584	ENSSBOG00000030924	-	87	68.342	Saimiri_boliviensis_boliviensis
ENSMZEG00005008639	alyref	99	55.678	ENSSHAG00000012866	-	99	51.648	Sarcophilus_harrisii
ENSMZEG00005008639	alyref	99	56.272	ENSSHAG00000000609	-	99	54.182	Sarcophilus_harrisii
ENSMZEG00005008639	alyref	78	77.103	ENSSFOG00015003923	alyref	73	70.561	Scleropages_formosus
ENSMZEG00005008639	alyref	70	76.042	ENSSFOG00015003678	alyref	83	68.750	Scleropages_formosus
ENSMZEG00005008639	alyref	100	82.609	ENSSMAG00000009283	alyref	100	85.145	Scophthalmus_maximus
ENSMZEG00005008639	alyref	100	49.823	ENSSMAG00000011169	-	100	52.764	Scophthalmus_maximus
ENSMZEG00005008639	alyref	100	88.645	ENSSDUG00000016158	alyref	100	87.546	Seriola_dumerili
ENSMZEG00005008639	alyref	100	87.179	ENSSLDG00000017803	alyref	100	87.179	Seriola_lalandi_dorsalis
ENSMZEG00005008639	alyref	99	53.261	ENSSPAG00000017028	-	96	51.095	Stegastes_partitus
ENSMZEG00005008639	alyref	100	48.763	ENSTRUG00000003051	-	100	48.201	Takifugu_rubripes
ENSMZEG00005008639	alyref	100	51.087	ENSTNIG00000014136	-	100	44.928	Tetraodon_nigroviridis
ENSMZEG00005008639	alyref	100	76.895	ENSTNIG00000011595	alyref	100	75.182	Tetraodon_nigroviridis
ENSMZEG00005008639	alyref	87	64.706	ENSVVUG00000000272	-	82	70.984	Vulpes_vulpes
ENSMZEG00005008639	alyref	99	82.847	ENSXCOG00000018047	alyref	99	74.368	Xiphophorus_couchianus
ENSMZEG00005008639	alyref	100	47.482	ENSXMAG00000018086	-	100	45.455	Xiphophorus_maculatus
ENSMZEG00005008639	alyref	99	82.847	ENSXMAG00000012218	alyref	99	74.368	Xiphophorus_maculatus