EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005009120 (Gene tree)
Gene ID: 101478872
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 9739 bases
Position: chrLG23:3695711-3705449
Accession: 101478872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005012168	RRM_5	PF13893.6	3.6e-06	1	1
ENSMZEP00005012199	RRM_1	PF00076.22	8e-14	1	1
ENSMZEP00005012168	RRM_1	PF00076.22	8.6e-14	1	1
ENSMZEP00005012199	SAP	PF02037.27	3.8e-09	1	1
ENSMZEP00005012168	SAP	PF02037.27	4.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005012595	-	4261	XM_004554956	ENSMZEP00005012168	836 (aa)	XP_004555013	UPI000329F787
ENSMZET00005012627	-	2361	-	ENSMZEP00005012199	786 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005009120's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005009120's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005009120	safb	66	43.450	ENSG00000160633	SAFB	78	62.295	Homo_sapiens
ENSMZEG00005009120	safb	100	82.718	ENSAPOG00000022508	safb	100	82.956	Acanthochromis_polyacanthus
ENSMZEG00005009120	safb	67	42.743	ENSAMEG00000012254	SAFB	96	41.323	Ailuropoda_melanoleuca
ENSMZEG00005009120	safb	100	85.120	ENSACIG00000006247	safb	100	86.038	Amphilophus_citrinellus
ENSMZEG00005009120	safb	95	82.397	ENSAOCG00000006308	safb	99	82.368	Amphiprion_ocellaris
ENSMZEG00005009120	safb	100	82.718	ENSAPEG00000023342	safb	100	82.718	Amphiprion_percula
ENSMZEG00005009120	safb	100	84.360	ENSATEG00000004998	safb	100	84.360	Anabas_testudineus
ENSMZEG00005009120	safb	61	41.084	ENSAPLG00000005780	-	98	44.931	Anas_platyrhynchos
ENSMZEG00005009120	safb	60	45.826	ENSAPLG00000006355	-	96	50.123	Anas_platyrhynchos
ENSMZEG00005009120	safb	61	58.145	ENSACAG00000016893	-	96	44.603	Anolis_carolinensis
ENSMZEG00005009120	safb	66	44.569	ENSANAG00000028821	SAFB	95	42.637	Aotus_nancymaae
ENSMZEG00005009120	safb	100	99.873	ENSACLG00000001926	safb	100	99.873	Astatotilapia_calliptera
ENSMZEG00005009120	safb	98	62.645	ENSAMXG00000018154	safb	100	63.103	Astyanax_mexicanus
ENSMZEG00005009120	safb	95	44.209	ENSBTAG00000007875	SAFB	94	41.648	Bos_taurus
ENSMZEG00005009120	safb	67	42.948	ENSCAFG00000018803	SAFB	83	41.558	Canis_familiaris
ENSMZEG00005009120	safb	67	42.925	ENSCAFG00020018943	SAFB	95	41.540	Canis_lupus_dingo
ENSMZEG00005009120	safb	95	44.196	ENSCHIG00000007262	SAFB	94	41.804	Capra_hircus
ENSMZEG00005009120	safb	57	43.281	ENSTSYG00000001851	-	84	43.982	Carlito_syrichta
ENSMZEG00005009120	safb	66	44.571	ENSCCAG00000020193	SAFB	95	43.067	Cebus_capucinus
ENSMZEG00005009120	safb	66	43.450	ENSCATG00000029994	SAFB	95	42.295	Cercocebus_atys
ENSMZEG00005009120	safb	65	42.155	ENSCLAG00000007734	SAFB	90	44.131	Chinchilla_lanigera
ENSMZEG00005009120	safb	66	43.450	ENSCSAG00000009949	SAFB	95	42.295	Chlorocebus_sabaeus
ENSMZEG00005009120	safb	60	33.160	ENSCHOG00000003208	SAFB	87	36.902	Choloepus_hoffmanni
ENSMZEG00005009120	safb	92	43.959	ENSCPBG00000010928	-	98	44.087	Chrysemys_picta_bellii
ENSMZEG00005009120	safb	88	50.843	ENSCPBG00000010936	-	98	47.210	Chrysemys_picta_bellii
ENSMZEG00005009120	safb	95	42.088	ENSCANG00000019754	-	93	42.759	Colobus_angolensis_palliatus
ENSMZEG00005009120	safb	83	43.678	ENSCANG00000004774	-	93	44.205	Colobus_angolensis_palliatus
ENSMZEG00005009120	safb	52	58.871	ENSCGRG00001002254	Safb	82	59.350	Cricetulus_griseus_chok1gshd
ENSMZEG00005009120	safb	56	39.062	ENSCGRG00000011529	Safb	89	38.554	Cricetulus_griseus_crigri
ENSMZEG00005009120	safb	99	71.429	ENSCSEG00000019870	safb	100	71.429	Cynoglossus_semilaevis
ENSMZEG00005009120	safb	100	68.262	ENSCVAG00000002226	safb	100	67.884	Cyprinodon_variegatus
ENSMZEG00005009120	safb	96	60.947	ENSDARG00000020467	safb	98	61.040	Danio_rerio
ENSMZEG00005009120	safb	66	43.899	ENSDNOG00000015746	SAFB	95	41.488	Dasypus_novemcinctus
ENSMZEG00005009120	safb	65	42.055	ENSDORG00000016200	Safb	89	40.115	Dipodomys_ordii
ENSMZEG00005009120	safb	56	38.580	ENSETEG00000018679	SAFB	66	36.815	Echinops_telfairi
ENSMZEG00005009120	safb	65	43.212	ENSEASG00005023019	SAFB	95	43.077	Equus_asinus_asinus
ENSMZEG00005009120	safb	65	43.688	ENSECAG00000018659	SAFB	85	41.785	Equus_caballus
ENSMZEG00005009120	safb	99	63.361	ENSELUG00000022327	safb	99	63.457	Esox_lucius
ENSMZEG00005009120	safb	67	43.106	ENSFCAG00000011835	SAFB	95	41.603	Felis_catus
ENSMZEG00005009120	safb	65	43.781	ENSFALG00000013882	-	87	45.778	Ficedula_albicollis
ENSMZEG00005009120	safb	57	41.416	ENSFALG00000013881	-	92	47.579	Ficedula_albicollis
ENSMZEG00005009120	safb	79	45.333	ENSFDAG00000020306	SAFB	66	56.557	Fukomys_damarensis
ENSMZEG00005009120	safb	100	71.053	ENSFHEG00000004219	safb	100	70.802	Fundulus_heteroclitus
ENSMZEG00005009120	safb	100	66.235	ENSGMOG00000014280	safb	100	66.824	Gadus_morhua
ENSMZEG00005009120	safb	99	43.165	ENSGALG00000013365	-	97	45.993	Gallus_gallus
ENSMZEG00005009120	safb	64	45.079	ENSGALG00000001948	-	90	49.158	Gallus_gallus
ENSMZEG00005009120	safb	100	68.275	ENSGAFG00000016162	safb	100	67.793	Gambusia_affinis
ENSMZEG00005009120	safb	100	74.223	ENSGACG00000011385	safb	100	73.648	Gasterosteus_aculeatus
ENSMZEG00005009120	safb	95	49.499	ENSGAGG00000008424	-	95	50.282	Gopherus_agassizii
ENSMZEG00005009120	safb	69	50.498	ENSGAGG00000017702	-	90	53.177	Gopherus_agassizii
ENSMZEG00005009120	safb	66	43.610	ENSGGOG00000015109	SAFB	95	42.358	Gorilla_gorilla
ENSMZEG00005009120	safb	100	86.493	ENSHBUG00000009218	safb	100	86.989	Haplochromis_burtoni
ENSMZEG00005009120	safb	65	41.812	ENSHGLG00000015883	SAFB	90	41.629	Heterocephalus_glaber_female
ENSMZEG00005009120	safb	84	41.786	ENSHGLG00100004228	SAFB	75	40.693	Heterocephalus_glaber_male
ENSMZEG00005009120	safb	94	64.817	ENSHCOG00000001705	safb	99	66.162	Hippocampus_comes
ENSMZEG00005009120	safb	99	63.441	ENSIPUG00000024869	safb2	99	63.615	Ictalurus_punctatus
ENSMZEG00005009120	safb	60	41.026	ENSSTOG00000002783	SAFB	98	39.821	Ictidomys_tridecemlineatus
ENSMZEG00005009120	safb	100	77.051	ENSKMAG00000022308	safb	100	77.527	Kryptolebias_marmoratus
ENSMZEG00005009120	safb	100	79.647	ENSLBEG00000006015	safb	100	79.176	Labrus_bergylta
ENSMZEG00005009120	safb	66	45.110	ENSLACG00000018090	SAFB	98	50.551	Latimeria_chalumnae
ENSMZEG00005009120	safb	98	62.890	ENSLOCG00000003613	safb	99	63.048	Lepisosteus_oculatus
ENSMZEG00005009120	safb	95	43.607	ENSLAFG00000003840	SAFB	96	43.062	Loxodonta_africana
ENSMZEG00005009120	safb	66	43.222	ENSMFAG00000003885	SAFB	95	42.295	Macaca_fascicularis
ENSMZEG00005009120	safb	66	43.791	ENSMMUG00000017970	SAFB	95	43.578	Macaca_mulatta
ENSMZEG00005009120	safb	66	42.062	ENSMNEG00000035637	SAFB	95	41.775	Macaca_nemestrina
ENSMZEG00005009120	safb	95	42.348	ENSMLEG00000038637	SAFB	89	42.118	Mandrillus_leucophaeus
ENSMZEG00005009120	safb	100	82.779	ENSMAMG00000003357	safb	91	82.304	Mastacembelus_armatus
ENSMZEG00005009120	safb	64	44.750	ENSMGAG00000001051	-	96	47.080	Meleagris_gallopavo
ENSMZEG00005009120	safb	97	41.208	ENSMGAG00000001101	-	98	44.481	Meleagris_gallopavo
ENSMZEG00005009120	safb	86	38.354	ENSMICG00000046795	-	95	40.621	Microcebus_murinus
ENSMZEG00005009120	safb	66	42.605	ENSMICG00000008739	-	93	42.227	Microcebus_murinus
ENSMZEG00005009120	safb	94	43.578	ENSMODG00000001236	SAFB	95	41.094	Monodelphis_domestica
ENSMZEG00005009120	safb	100	80.964	ENSMALG00000020330	safb	100	80.846	Monopterus_albus
ENSMZEG00005009120	safb	52	58.537	MGP_CAROLIEiJ_G0021780	Safb	89	41.826	Mus_caroli
ENSMZEG00005009120	safb	52	59.350	ENSMUSG00000071054	Safb	89	42.165	Mus_musculus
ENSMZEG00005009120	safb	51	58.537	MGP_PahariEiJ_G0020769	Safb	89	41.458	Mus_pahari
ENSMZEG00005009120	safb	67	42.351	ENSMPUG00000006123	SAFB	90	41.151	Mustela_putorius_furo
ENSMZEG00005009120	safb	98	44.248	ENSMLUG00000001081	SAFB	95	41.925	Myotis_lucifugus
ENSMZEG00005009120	safb	51	56.303	ENSNGAG00000019882	Safb	84	56.303	Nannospalax_galili
ENSMZEG00005009120	safb	66	43.450	ENSNLEG00000013551	SAFB	94	43.206	Nomascus_leucogenys
ENSMZEG00005009120	safb	60	40.663	ENSOPRG00000011561	-	97	40.644	Ochotona_princeps
ENSMZEG00005009120	safb	65	41.997	ENSODEG00000014838	SAFB	90	41.779	Octodon_degus
ENSMZEG00005009120	safb	100	97.027	ENSONIG00000002318	safb	100	97.027	Oreochromis_niloticus
ENSMZEG00005009120	safb	87	40.000	ENSOCUG00000014628	SAFB	62	41.590	Oryctolagus_cuniculus
ENSMZEG00005009120	safb	98	74.303	ENSORLG00000016989	safb	100	74.171	Oryzias_latipes
ENSMZEG00005009120	safb	67	68.262	ENSORLG00020000404	safb	100	67.159	Oryzias_latipes_hni
ENSMZEG00005009120	safb	98	75.152	ENSORLG00015010733	safb	100	74.941	Oryzias_latipes_hsok
ENSMZEG00005009120	safb	100	73.897	ENSOMEG00000009066	safb	100	74.017	Oryzias_melastigma
ENSMZEG00005009120	safb	65	44.281	ENSOGAG00000027769	SAFB	90	44.052	Otolemur_garnettii
ENSMZEG00005009120	safb	95	40.691	ENSOARG00000007662	-	94	40.330	Ovis_aries
ENSMZEG00005009120	safb	82	38.058	ENSOARG00000007856	-	100	39.346	Ovis_aries
ENSMZEG00005009120	safb	66	43.860	ENSPPAG00000035129	SAFB	95	42.249	Pan_paniscus
ENSMZEG00005009120	safb	67	43.106	ENSPPRG00000017197	SAFB	95	41.603	Panthera_pardus
ENSMZEG00005009120	safb	66	43.860	ENSPTRG00000010335	SAFB	95	42.249	Pan_troglodytes
ENSMZEG00005009120	safb	66	43.175	ENSPANG00000007770	SAFB	95	42.295	Papio_anubis
ENSMZEG00005009120	safb	99	62.767	ENSPKIG00000009902	safb	99	63.063	Paramormyrops_kingsleyae
ENSMZEG00005009120	safb	99	47.761	ENSPSIG00000011679	-	98	48.606	Pelodiscus_sinensis
ENSMZEG00005009120	safb	99	46.154	ENSPSIG00000009367	-	96	46.221	Pelodiscus_sinensis
ENSMZEG00005009120	safb	65	41.242	ENSPEMG00000020428	Safb	82	56.303	Peromyscus_maniculatus_bairdii
ENSMZEG00005009120	safb	60	49.813	ENSPCIG00000009504	-	95	49.585	Phascolarctos_cinereus
ENSMZEG00005009120	safb	100	70.787	ENSPFOG00000007745	safb	100	70.537	Poecilia_formosa
ENSMZEG00005009120	safb	100	67.981	ENSPLAG00000001614	safb	100	67.742	Poecilia_latipinna
ENSMZEG00005009120	safb	100	70.911	ENSPMEG00000021023	safb	100	70.662	Poecilia_mexicana
ENSMZEG00005009120	safb	100	69.325	ENSPREG00000012496	safb	100	69.080	Poecilia_reticulata
ENSMZEG00005009120	safb	66	43.450	ENSPPYG00000009428	SAFB	95	42.169	Pongo_abelii
ENSMZEG00005009120	safb	65	39.638	ENSPCAG00000006475	SAFB	95	40.088	Procavia_capensis
ENSMZEG00005009120	safb	95	41.507	ENSPCOG00000014090	SAFB	93	37.889	Propithecus_coquereli
ENSMZEG00005009120	safb	95	40.695	ENSPVAG00000004913	SAFB	56	55.455	Pteropus_vampyrus
ENSMZEG00005009120	safb	99	63.626	ENSPNAG00000021838	safb	99	64.516	Pygocentrus_nattereri
ENSMZEG00005009120	safb	51	60.163	ENSRNOG00000050543	Safb	71	60.656	Rattus_norvegicus
ENSMZEG00005009120	safb	66	43.667	ENSRBIG00000042509	SAFB	86	45.278	Rhinopithecus_bieti
ENSMZEG00005009120	safb	66	43.222	ENSRROG00000029278	SAFB	95	42.186	Rhinopithecus_roxellana
ENSMZEG00005009120	safb	66	44.712	ENSSBOG00000026291	SAFB	95	42.670	Saimiri_boliviensis_boliviensis
ENSMZEG00005009120	safb	99	62.514	ENSSFOG00015008156	safb	99	62.316	Scleropages_formosus
ENSMZEG00005009120	safb	100	82.542	ENSSMAG00000009316	safb	100	82.542	Scophthalmus_maximus
ENSMZEG00005009120	safb	100	84.111	ENSSDUG00000009652	safb	100	83.607	Seriola_dumerili
ENSMZEG00005009120	safb	100	84.323	ENSSLDG00000001670	safb	100	83.848	Seriola_lalandi_dorsalis
ENSMZEG00005009120	safb	60	41.115	ENSSARG00000010475	SAFB	98	38.952	Sorex_araneus
ENSMZEG00005009120	safb	54	43.945	ENSSPUG00000009747	-	96	42.273	Sphenodon_punctatus
ENSMZEG00005009120	safb	52	44.294	ENSSPUG00000009820	-	94	48.966	Sphenodon_punctatus
ENSMZEG00005009120	safb	99	77.652	ENSSPAG00000015682	safb	99	77.652	Stegastes_partitus
ENSMZEG00005009120	safb	65	43.657	ENSSSCG00000013522	SAFB	96	42.857	Sus_scrofa
ENSMZEG00005009120	safb	65	43.514	ENSTGUG00000000502	-	94	46.028	Taeniopygia_guttata
ENSMZEG00005009120	safb	64	44.702	ENSTGUG00000000489	-	96	50.117	Taeniopygia_guttata
ENSMZEG00005009120	safb	100	75.297	ENSTRUG00000003567	safb	100	75.178	Takifugu_rubripes
ENSMZEG00005009120	safb	91	62.035	ENSTNIG00000015470	safb	100	63.228	Tetraodon_nigroviridis
ENSMZEG00005009120	safb	83	75.000	ENSTTRG00000013588	SAFB	75	75.000	Tursiops_truncatus
ENSMZEG00005009120	safb	74	42.928	ENSUMAG00000009734	SAFB	85	43.772	Ursus_maritimus
ENSMZEG00005009120	safb	67	42.948	ENSVVUG00000013720	SAFB	83	41.577	Vulpes_vulpes
ENSMZEG00005009120	safb	64	44.240	ENSXETG00000008755	safb	95	46.588	Xenopus_tropicalis
ENSMZEG00005009120	safb	100	71.161	ENSXMAG00000003458	safb	100	70.911	Xiphophorus_maculatus