EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005009196 (Gene tree)
Gene ID: 101486319
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 13580 bases
Position: chrLG3:34338016-34351595
Accession: 101486319
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005012232	KH_1	PF00013.29	4.1e-06	1	1
ENSMZEP00005012232	zf-CCHC	PF00098.23	0.00056	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005012660	-	3757	XM_004576078	ENSMZEP00005012232	680 (aa)	XP_004576135	UPI00032987B3

Gene Model

Click here to download ENSMZEG00005009196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005009196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005009196	sf1	97	93.363	ENSAPOG00000012341	sf1	67	92.544	Acanthochromis_polyacanthus
ENSMZEG00005009196	sf1	100	91.056	ENSACIG00000016514	sf1	100	91.056	Amphilophus_citrinellus
ENSMZEG00005009196	sf1	97	93.656	ENSAOCG00000010934	sf1	67	92.763	Amphiprion_ocellaris
ENSMZEG00005009196	sf1	97	93.656	ENSAPEG00000009498	sf1	67	92.763	Amphiprion_percula
ENSMZEG00005009196	sf1	67	91.009	ENSATEG00000001894	sf1	67	91.685	Anabas_testudineus
ENSMZEG00005009196	sf1	84	66.121	ENSANAG00000022607	-	88	73.995	Aotus_nancymaae
ENSMZEG00005009196	sf1	61	77.336	ENSANAG00000026664	-	89	82.632	Aotus_nancymaae
ENSMZEG00005009196	sf1	100	94.420	ENSACLG00000007633	sf1	100	94.420	Astatotilapia_calliptera
ENSMZEG00005009196	sf1	67	83.878	ENSAMXG00000003630	sf1	59	83.589	Astyanax_mexicanus
ENSMZEG00005009196	sf1	61	77.030	ENSBTAG00000001035	SF1	61	82.632	Bos_taurus
ENSMZEG00005009196	sf1	61	77.030	ENSCJAG00000002780	SF1	58	82.632	Callithrix_jacchus
ENSMZEG00005009196	sf1	61	77.030	ENSCAFG00000014239	SF1	58	82.368	Canis_familiaris
ENSMZEG00005009196	sf1	61	77.030	ENSCAFG00020014381	SF1	58	82.632	Canis_lupus_dingo
ENSMZEG00005009196	sf1	61	77.030	ENSCHIG00000025867	SF1	58	82.632	Capra_hircus
ENSMZEG00005009196	sf1	59	78.657	ENSCAPG00000010762	SF1	65	83.467	Cavia_aperea
ENSMZEG00005009196	sf1	59	71.359	ENSCCAG00000023781	-	82	72.895	Cebus_capucinus
ENSMZEG00005009196	sf1	61	77.030	ENSCCAG00000037881	SF1	89	82.632	Cebus_capucinus
ENSMZEG00005009196	sf1	61	77.030	ENSCATG00000011564	SF1	89	82.632	Cercocebus_atys
ENSMZEG00005009196	sf1	56	73.134	ENSCHOG00000006008	SF1	66	76.944	Choloepus_hoffmanni
ENSMZEG00005009196	sf1	60	56.028	ENSCING00000005564	-	92	53.780	Ciona_intestinalis
ENSMZEG00005009196	sf1	58	52.983	ENSCSAVG00000009055	-	72	61.238	Ciona_savignyi
ENSMZEG00005009196	sf1	61	77.030	ENSCANG00000042201	SF1	89	82.632	Colobus_angolensis_palliatus
ENSMZEG00005009196	sf1	61	77.262	ENSCGRG00001003677	Sf1	65	83.158	Cricetulus_griseus_chok1gshd
ENSMZEG00005009196	sf1	59	76.832	ENSCGRG00000001708	Sf1	65	83.467	Cricetulus_griseus_crigri
ENSMZEG00005009196	sf1	98	88.421	ENSCSEG00000014375	sf1	65	88.840	Cynoglossus_semilaevis
ENSMZEG00005009196	sf1	98	90.390	ENSCVAG00000001670	sf1	67	91.648	Cyprinodon_variegatus
ENSMZEG00005009196	sf1	85	82.646	ENSDARG00000008188	sf1	65	91.599	Danio_rerio
ENSMZEG00005009196	sf1	61	77.030	ENSDORG00000016334	Sf1	58	82.632	Dipodomys_ordii
ENSMZEG00005009196	sf1	59	72.705	ENSETEG00000012830	SF1	51	75.881	Echinops_telfairi
ENSMZEG00005009196	sf1	53	77.719	ENSEEUG00000001058	SF1	83	82.985	Erinaceus_europaeus
ENSMZEG00005009196	sf1	78	78.810	ENSELUG00000013225	sf1	60	84.632	Esox_lucius
ENSMZEG00005009196	sf1	61	77.030	ENSFCAG00000012231	SF1	58	82.368	Felis_catus
ENSMZEG00005009196	sf1	59	78.417	ENSFDAG00000009833	SF1	65	82.933	Fukomys_damarensis
ENSMZEG00005009196	sf1	67	89.934	ENSFHEG00000022656	sf1	67	89.059	Fundulus_heteroclitus
ENSMZEG00005009196	sf1	72	76.423	ENSGMOG00000007469	sf1	61	94.595	Gadus_morhua
ENSMZEG00005009196	sf1	89	88.834	ENSGAFG00000019284	sf1	74	90.330	Gambusia_affinis
ENSMZEG00005009196	sf1	62	80.093	ENSGAGG00000021691	SF1	68	70.988	Gopherus_agassizii
ENSMZEG00005009196	sf1	100	99.853	ENSHBUG00000011598	sf1	100	99.853	Haplochromis_burtoni
ENSMZEG00005009196	sf1	61	77.030	ENSHGLG00000009541	SF1	65	82.632	Heterocephalus_glaber_female
ENSMZEG00005009196	sf1	59	78.417	ENSHGLG00100013879	-	65	82.933	Heterocephalus_glaber_male
ENSMZEG00005009196	sf1	55	71.463	ENSHGLG00100008255	-	70	77.841	Heterocephalus_glaber_male
ENSMZEG00005009196	sf1	70	85.654	ENSHCOG00000011388	sf1	68	87.500	Hippocampus_comes
ENSMZEG00005009196	sf1	59	78.417	ENSSTOG00000009790	-	58	82.933	Ictidomys_tridecemlineatus
ENSMZEG00005009196	sf1	55	70.390	ENSSTOG00000024353	-	67	72.895	Ictidomys_tridecemlineatus
ENSMZEG00005009196	sf1	61	77.262	ENSJJAG00000011788	Sf1	58	82.895	Jaculus_jaculus
ENSMZEG00005009196	sf1	67	89.325	ENSKMAG00000005854	sf1	70	89.278	Kryptolebias_marmoratus
ENSMZEG00005009196	sf1	83	87.905	ENSLBEG00000019836	sf1	72	88.720	Labrus_bergylta
ENSMZEG00005009196	sf1	60	78.155	ENSLACG00000018493	SF1	68	79.200	Latimeria_chalumnae
ENSMZEG00005009196	sf1	67	79.915	ENSLOCG00000002130	sf1	72	79.957	Lepisosteus_oculatus
ENSMZEG00005009196	sf1	59	80.482	ENSLAFG00000007201	SF1	63	84.043	Loxodonta_africana
ENSMZEG00005009196	sf1	61	77.030	ENSMFAG00000033122	SF1	89	82.632	Macaca_fascicularis
ENSMZEG00005009196	sf1	61	77.030	ENSMMUG00000022606	SF1	90	82.368	Macaca_mulatta
ENSMZEG00005009196	sf1	61	77.030	ENSMNEG00000037901	SF1	89	82.632	Macaca_nemestrina
ENSMZEG00005009196	sf1	59	77.962	ENSMLEG00000040706	SF1	90	81.984	Mandrillus_leucophaeus
ENSMZEG00005009196	sf1	67	93.421	ENSMAMG00000001780	sf1	67	93.435	Mastacembelus_armatus
ENSMZEG00005009196	sf1	61	75.744	ENSMAUG00000014064	Sf1	65	83.158	Mesocricetus_auratus
ENSMZEG00005009196	sf1	61	77.030	ENSMICG00000001202	SF1	89	82.415	Microcebus_murinus
ENSMZEG00005009196	sf1	61	77.030	ENSMOCG00000022038	Sf1	65	83.158	Microtus_ochrogaster
ENSMZEG00005009196	sf1	67	88.816	ENSMMOG00000020474	sf1	67	88.184	Mola_mola
ENSMZEG00005009196	sf1	59	76.923	ENSMODG00000029407	SF1	80	83.158	Monodelphis_domestica
ENSMZEG00005009196	sf1	67	86.404	ENSMALG00000020521	sf1	73	86.433	Monopterus_albus
ENSMZEG00005009196	sf1	61	75.744	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSMZEG00005009196	sf1	61	75.744	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSMZEG00005009196	sf1	61	75.744	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSMZEG00005009196	sf1	61	75.744	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSMZEG00005009196	sf1	59	76.636	ENSMPUG00000012684	SF1	58	82.632	Mustela_putorius_furo
ENSMZEG00005009196	sf1	64	72.826	ENSMLUG00000029800	-	64	78.947	Myotis_lucifugus
ENSMZEG00005009196	sf1	59	76.869	ENSMLUG00000015217	-	58	82.632	Myotis_lucifugus
ENSMZEG00005009196	sf1	61	77.262	ENSNGAG00000005550	Sf1	65	82.895	Nannospalax_galili
ENSMZEG00005009196	sf1	100	93.979	ENSNBRG00000017606	sf1	100	93.979	Neolamprologus_brichardi
ENSMZEG00005009196	sf1	61	77.262	ENSNLEG00000005236	-	89	82.632	Nomascus_leucogenys
ENSMZEG00005009196	sf1	58	77.143	ENSMEUG00000013424	SF1	69	83.333	Notamacropus_eugenii
ENSMZEG00005009196	sf1	100	99.706	ENSONIG00000015728	sf1	100	99.706	Oreochromis_niloticus
ENSMZEG00005009196	sf1	59	78.199	ENSOCUG00000026486	SF1	59	82.368	Oryctolagus_cuniculus
ENSMZEG00005009196	sf1	69	87.983	ENSORLG00000011853	sf1	66	88.326	Oryzias_latipes
ENSMZEG00005009196	sf1	69	88.412	ENSORLG00020011834	sf1	66	88.546	Oryzias_latipes_hni
ENSMZEG00005009196	sf1	67	87.965	ENSORLG00015012855	sf1	66	87.885	Oryzias_latipes_hsok
ENSMZEG00005009196	sf1	67	89.956	ENSOMEG00000005210	sf1	67	89.890	Oryzias_melastigma
ENSMZEG00005009196	sf1	61	77.030	ENSOGAG00000016196	SF1	58	82.368	Otolemur_garnettii
ENSMZEG00005009196	sf1	61	77.030	ENSOARG00000009166	SF1	65	82.368	Ovis_aries
ENSMZEG00005009196	sf1	59	79.376	ENSPPAG00000002799	-	90	82.632	Pan_paniscus
ENSMZEG00005009196	sf1	59	78.417	ENSPPRG00000013566	SF1	58	83.702	Panthera_pardus
ENSMZEG00005009196	sf1	59	78.199	ENSPTIG00000016141	SF1	67	82.632	Panthera_tigris_altaica
ENSMZEG00005009196	sf1	61	78.089	ENSPTRG00000003846	SF1	89	82.632	Pan_troglodytes
ENSMZEG00005009196	sf1	61	76.798	ENSPANG00000020754	SF1	89	82.632	Papio_anubis
ENSMZEG00005009196	sf1	61	75.744	ENSPEMG00000010463	Sf1	65	83.158	Peromyscus_maniculatus_bairdii
ENSMZEG00005009196	sf1	61	77.103	ENSPCIG00000018173	SF1	60	82.895	Phascolarctos_cinereus
ENSMZEG00005009196	sf1	97	89.879	ENSPFOG00000013683	sf1	67	90.769	Poecilia_formosa
ENSMZEG00005009196	sf1	90	89.286	ENSPLAG00000018076	sf1	62	90.220	Poecilia_latipinna
ENSMZEG00005009196	sf1	97	89.879	ENSPMEG00000005726	sf1	67	90.769	Poecilia_mexicana
ENSMZEG00005009196	sf1	97	89.426	ENSPREG00000004155	sf1	67	89.890	Poecilia_reticulata
ENSMZEG00005009196	sf1	61	77.030	ENSPPYG00000003098	-	70	82.368	Pongo_abelii
ENSMZEG00005009196	sf1	59	77.725	ENSPCAG00000013631	SF1	75	66.098	Procavia_capensis
ENSMZEG00005009196	sf1	61	77.030	ENSPCOG00000027546	SF1	89	82.415	Propithecus_coquereli
ENSMZEG00005009196	sf1	61	76.027	ENSPVAG00000016938	SF1	75	68.836	Pteropus_vampyrus
ENSMZEG00005009196	sf1	100	99.706	ENSPNYG00000004673	sf1	100	99.706	Pundamilia_nyererei
ENSMZEG00005009196	sf1	67	83.624	ENSPNAG00000013072	sf1	67	83.553	Pygocentrus_nattereri
ENSMZEG00005009196	sf1	61	75.744	ENSRNOG00000021085	Sf1	58	83.158	Rattus_norvegicus
ENSMZEG00005009196	sf1	61	77.030	ENSRBIG00000042818	SF1	89	82.632	Rhinopithecus_bieti
ENSMZEG00005009196	sf1	60	77.336	ENSRROG00000045655	SF1	90	81.984	Rhinopithecus_roxellana
ENSMZEG00005009196	sf1	80	65.749	ENSSBOG00000022267	-	84	72.779	Saimiri_boliviensis_boliviensis
ENSMZEG00005009196	sf1	72	71.717	ENSSHAG00000006841	SF1	68	84.987	Sarcophilus_harrisii
ENSMZEG00005009196	sf1	71	80.493	ENSSFOG00015021978	sf1	66	82.018	Scleropages_formosus
ENSMZEG00005009196	sf1	84	87.780	ENSSMAG00000007549	sf1	70	89.542	Scophthalmus_maximus
ENSMZEG00005009196	sf1	67	92.123	ENSSDUG00000003903	sf1	70	93.668	Seriola_dumerili
ENSMZEG00005009196	sf1	59	73.621	ENSSARG00000008180	SF1	71	77.867	Sorex_araneus
ENSMZEG00005009196	sf1	59	79.953	ENSSPUG00000012907	SF1	58	85.634	Sphenodon_punctatus
ENSMZEG00005009196	sf1	97	93.807	ENSSPAG00000019060	sf1	67	93.640	Stegastes_partitus
ENSMZEG00005009196	sf1	61	75.744	ENSSSCG00000013021	SF1	58	82.632	Sus_scrofa
ENSMZEG00005009196	sf1	73	71.349	ENSTNIG00000004820	sf1	72	77.892	Tetraodon_nigroviridis
ENSMZEG00005009196	sf1	59	73.580	ENSTBEG00000013133	SF1	62	66.452	Tupaia_belangeri
ENSMZEG00005009196	sf1	59	80.723	ENSUMAG00000007268	SF1	69	82.632	Ursus_maritimus
ENSMZEG00005009196	sf1	85	72.326	ENSXETG00000008434	sf1	62	85.675	Xenopus_tropicalis
ENSMZEG00005009196	sf1	71	86.948	ENSXCOG00000003704	sf1	69	92.857	Xiphophorus_couchianus
ENSMZEG00005009196	sf1	97	89.426	ENSXMAG00000007822	sf1	70	90.789	Xiphophorus_maculatus