EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005009879 (Gene tree)
Gene ID: 101478607
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 37649 bases
Position: chrLG13:22503116-22540764
Accession: 101478607
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005013145	Tudor-knot	PF11717.8	2.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005013595	-	7063	XM_004559741	ENSMZEP00005013145	1293 (aa)	XP_004559798	UPI00032A38B1
ENSMZET00005013608	-	6880	XM_004559744	ENSMZEP00005013158	1232 (aa)	XP_004559801	UPI0003299774

Gene Model

Click here to download ENSMZEG00005009879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005009879's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005009879	tomm20a	67	74.515	ENSG00000054267	ARID4B	89	74.515	Homo_sapiens
ENSMZEG00005009879	tomm20a	100	89.824	ENSAPOG00000010823	tomm20a	100	89.288	Acanthochromis_polyacanthus
ENSMZEG00005009879	tomm20a	94	94.799	ENSACIG00000006313	tomm20a	100	94.799	Amphilophus_citrinellus
ENSMZEG00005009879	tomm20a	100	89.365	ENSAOCG00000003330	tomm20a	100	88.982	Amphiprion_ocellaris
ENSMZEG00005009879	tomm20a	100	89.135	ENSAPEG00000024018	tomm20a	100	88.753	Amphiprion_percula
ENSMZEG00005009879	tomm20a	100	86.305	ENSATEG00000014930	tomm20a	100	85.998	Anabas_testudineus
ENSMZEG00005009879	tomm20a	52	60.280	ENSACAG00000001289	ARID4B	99	51.369	Anolis_carolinensis
ENSMZEG00005009879	tomm20a	94	94.228	ENSACLG00000023521	tomm20a	100	94.228	Astatotilapia_calliptera
ENSMZEG00005009879	tomm20a	83	77.240	ENSAMXG00000003657	tomm20a	91	76.998	Astyanax_mexicanus
ENSMZEG00005009879	tomm20a	100	50.036	ENSBTAG00000000222	ARID4B	54	60.472	Bos_taurus
ENSMZEG00005009879	tomm20a	99	48.882	ENSCHIG00000020742	ARID4B	99	50.147	Capra_hircus
ENSMZEG00005009879	tomm20a	99	51.017	ENSCPOG00000034766	ARID4B	99	50.109	Cavia_porcellus
ENSMZEG00005009879	tomm20a	99	80.698	ENSCSEG00000012928	tomm20a	99	81.240	Cynoglossus_semilaevis
ENSMZEG00005009879	tomm20a	100	80.353	ENSCVAG00000003244	tomm20a	100	80.583	Cyprinodon_variegatus
ENSMZEG00005009879	tomm20a	100	65.504	ENSDARG00000090656	tomm20a	99	65.509	Danio_rerio
ENSMZEG00005009879	tomm20a	99	51.020	ENSDORG00000006422	Arid4b	99	51.211	Dipodomys_ordii
ENSMZEG00005009879	tomm20a	87	62.198	ENSETEG00000005596	ARID4B	89	61.662	Echinops_telfairi
ENSMZEG00005009879	tomm20a	69	54.054	ENSELUG00000018441	tomm20a	94	54.057	Esox_lucius
ENSMZEG00005009879	tomm20a	100	81.895	ENSFHEG00000003798	tomm20a	100	81.742	Fundulus_heteroclitus
ENSMZEG00005009879	tomm20a	90	74.902	ENSGMOG00000018747	tomm20a	91	74.510	Gadus_morhua
ENSMZEG00005009879	tomm20a	99	77.921	ENSGACG00000004298	tomm20a	100	78.165	Gasterosteus_aculeatus
ENSMZEG00005009879	tomm20a	100	99.845	ENSHBUG00000020369	tomm20a	100	99.845	Haplochromis_burtoni
ENSMZEG00005009879	tomm20a	100	51.193	ENSHGLG00000012546	ARID4B	54	59.669	Heterocephalus_glaber_female
ENSMZEG00005009879	tomm20a	100	51.193	ENSHGLG00100015436	ARID4B	54	59.669	Heterocephalus_glaber_male
ENSMZEG00005009879	tomm20a	95	83.843	ENSHCOG00000010376	tomm20a	100	83.188	Hippocampus_comes
ENSMZEG00005009879	tomm20a	100	62.481	ENSIPUG00000014234	arid4b	99	63.398	Ictalurus_punctatus
ENSMZEG00005009879	tomm20a	100	51.930	ENSJJAG00000021368	Arid4b	99	52.321	Jaculus_jaculus
ENSMZEG00005009879	tomm20a	91	75.656	ENSKMAG00000010987	tomm20a	98	76.134	Kryptolebias_marmoratus
ENSMZEG00005009879	tomm20a	100	60.136	ENSLOCG00000015899	tomm20a	99	61.261	Lepisosteus_oculatus
ENSMZEG00005009879	tomm20a	53	60.110	ENSLAFG00000014295	ARID4B	99	50.727	Loxodonta_africana
ENSMZEG00005009879	tomm20a	93	85.820	ENSMAMG00000017134	tomm20a	99	85.667	Mastacembelus_armatus
ENSMZEG00005009879	tomm20a	53	60.699	ENSMICG00000016358	ARID4B	55	59.890	Microcebus_murinus
ENSMZEG00005009879	tomm20a	93	86.404	ENSMMOG00000000561	tomm20a	98	85.307	Mola_mola
ENSMZEG00005009879	tomm20a	100	86.636	ENSMALG00000005205	tomm20a	100	86.482	Monopterus_albus
ENSMZEG00005009879	tomm20a	94	96.698	ENSNBRG00000019684	tomm20a	100	96.698	Neolamprologus_brichardi
ENSMZEG00005009879	tomm20a	100	77.735	ENSORLG00000012510	tomm20a	100	77.047	Oryzias_latipes
ENSMZEG00005009879	tomm20a	92	84.689	ENSORLG00020013988	tomm20a	100	85.748	Oryzias_latipes_hni
ENSMZEG00005009879	tomm20a	92	85.096	ENSORLG00015022835	tomm20a	100	85.681	Oryzias_latipes_hsok
ENSMZEG00005009879	tomm20a	100	78.358	ENSOMEG00000000521	tomm20a	100	77.897	Oryzias_melastigma
ENSMZEG00005009879	tomm20a	99	50.072	ENSOARG00000003481	ARID4B	97	51.676	Ovis_aries
ENSMZEG00005009879	tomm20a	54	60.082	ENSPPRG00000013739	ARID4B	99	51.278	Panthera_pardus
ENSMZEG00005009879	tomm20a	54	60.490	ENSPTIG00000012520	ARID4B	99	52.416	Panthera_tigris_altaica
ENSMZEG00005009879	tomm20a	93	49.382	ENSPSIG00000011632	ARID4B	99	49.216	Pelodiscus_sinensis
ENSMZEG00005009879	tomm20a	52	73.684	ENSPMGG00000001596	tomm20a	89	74.436	Periophthalmus_magnuspinnatus
ENSMZEG00005009879	tomm20a	100	51.786	ENSPCIG00000029756	ARID4B	99	53.052	Phascolarctos_cinereus
ENSMZEG00005009879	tomm20a	100	81.465	ENSPFOG00000019430	tomm20a	100	81.617	Poecilia_formosa
ENSMZEG00005009879	tomm20a	100	81.312	ENSPLAG00000010554	tomm20a	100	81.388	Poecilia_latipinna
ENSMZEG00005009879	tomm20a	100	79.388	ENSPMEG00000003093	tomm20a	100	75.744	Poecilia_mexicana
ENSMZEG00005009879	tomm20a	100	81.575	ENSPREG00000007996	tomm20a	100	81.422	Poecilia_reticulata
ENSMZEG00005009879	tomm20a	53	61.517	ENSPVAG00000015159	ARID4B	99	50.036	Pteropus_vampyrus
ENSMZEG00005009879	tomm20a	99	92.736	ENSPNYG00000013988	tomm20a	100	92.736	Pundamilia_nyererei
ENSMZEG00005009879	tomm20a	100	66.012	ENSPNAG00000000523	tomm20a	92	65.721	Pygocentrus_nattereri
ENSMZEG00005009879	tomm20a	90	72.414	ENSRBIG00000042029	ARID4B	96	47.549	Rhinopithecus_bieti
ENSMZEG00005009879	tomm20a	53	59.434	ENSSHAG00000015214	ARID4B	99	51.297	Sarcophilus_harrisii
ENSMZEG00005009879	tomm20a	75	50.942	ENSSFOG00015008923	tomm20a	98	52.314	Scleropages_formosus
ENSMZEG00005009879	tomm20a	100	61.643	ENSSFOG00015000132	arid4b	99	62.385	Scleropages_formosus
ENSMZEG00005009879	tomm20a	100	83.471	ENSSMAG00000010430	tomm20a	100	84.222	Scophthalmus_maximus
ENSMZEG00005009879	tomm20a	100	88.727	ENSSDUG00000003019	tomm20a	100	88.190	Seriola_dumerili
ENSMZEG00005009879	tomm20a	100	89.051	ENSSPAG00000007358	tomm20a	100	88.668	Stegastes_partitus
ENSMZEG00005009879	tomm20a	53	60.606	ENSSSCG00000010156	ARID4B	62	60.276	Sus_scrofa
ENSMZEG00005009879	tomm20a	69	73.106	ENSTRUG00000002893	tomm20a	100	72.448	Takifugu_rubripes
ENSMZEG00005009879	tomm20a	70	67.397	ENSTBEG00000003961	ARID4B	67	67.153	Tupaia_belangeri
ENSMZEG00005009879	tomm20a	100	50.177	ENSTTRG00000002228	ARID4B	99	51.717	Tursiops_truncatus
ENSMZEG00005009879	tomm20a	68	58.240	ENSVPAG00000006841	ARID4B	68	58.403	Vicugna_pacos
ENSMZEG00005009879	tomm20a	100	82.335	ENSXMAG00000006538	tomm20a	100	81.797	Xiphophorus_maculatus