EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005010008 (Gene tree)
Gene ID: 101465033
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 4723 bases
Position: chrLG7:55969145-55973867
Accession: 101465033
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005013307	HVSL	PF09749.9	1.4e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005013759	-	843	XM_004564625	ENSMZEP00005013307	280 (aa)	XP_004564682	UPI000329A152

Gene Model

Click here to download ENSMZEG00005010008's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005010008's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005010008	usb1	80	53.540	ENSG00000103005	USB1	100	54.206	Homo_sapiens
ENSMZEG00005010008	usb1	100	75.177	ENSAPOG00000011942	usb1	100	73.571	Acanthochromis_polyacanthus
ENSMZEG00005010008	usb1	99	50.179	ENSAMEG00000017205	USB1	83	54.464	Ailuropoda_melanoleuca
ENSMZEG00005010008	usb1	80	86.161	ENSACIG00000012234	usb1	83	86.161	Amphilophus_citrinellus
ENSMZEG00005010008	usb1	99	78.445	ENSAOCG00000014831	usb1	99	76.157	Amphiprion_ocellaris
ENSMZEG00005010008	usb1	99	77.739	ENSAPEG00000000296	usb1	99	75.445	Amphiprion_percula
ENSMZEG00005010008	usb1	99	77.305	ENSATEG00000009348	usb1	99	77.305	Anabas_testudineus
ENSMZEG00005010008	usb1	79	55.556	ENSAPLG00000002756	USB1	99	56.000	Anas_platyrhynchos
ENSMZEG00005010008	usb1	79	51.542	ENSACAG00000015481	USB1	98	51.542	Anolis_carolinensis
ENSMZEG00005010008	usb1	80	52.212	ENSANAG00000035640	USB1	94	49.398	Aotus_nancymaae
ENSMZEG00005010008	usb1	100	99.644	ENSACLG00000020586	usb1	100	99.644	Astatotilapia_calliptera
ENSMZEG00005010008	usb1	99	54.167	ENSAMXG00000040146	usb1	83	57.371	Astyanax_mexicanus
ENSMZEG00005010008	usb1	99	48.070	ENSBTAG00000015758	USB1	92	51.230	Bos_taurus
ENSMZEG00005010008	usb1	80	53.097	ENSCJAG00000011733	USB1	94	50.201	Callithrix_jacchus
ENSMZEG00005010008	usb1	99	49.104	ENSCAFG00000008556	USB1	60	53.363	Canis_familiaris
ENSMZEG00005010008	usb1	99	47.842	ENSCAFG00020009263	USB1	84	53.363	Canis_lupus_dingo
ENSMZEG00005010008	usb1	99	48.421	ENSCHIG00000024290	USB1	92	51.852	Capra_hircus
ENSMZEG00005010008	usb1	99	48.746	ENSTSYG00000006997	USB1	85	52.679	Carlito_syrichta
ENSMZEG00005010008	usb1	80	43.750	ENSCAPG00000009057	USB1	96	43.750	Cavia_aperea
ENSMZEG00005010008	usb1	99	47.670	ENSCPOG00000014325	USB1	83	54.018	Cavia_porcellus
ENSMZEG00005010008	usb1	80	52.655	ENSCCAG00000022132	USB1	94	49.799	Cebus_capucinus
ENSMZEG00005010008	usb1	80	53.097	ENSCATG00000032174	USB1	94	50.201	Cercocebus_atys
ENSMZEG00005010008	usb1	61	53.757	ENSCLAG00000007363	USB1	98	53.757	Chinchilla_lanigera
ENSMZEG00005010008	usb1	80	53.097	ENSCSAG00000004783	USB1	94	50.201	Chlorocebus_sabaeus
ENSMZEG00005010008	usb1	79	55.157	ENSCPBG00000026943	USB1	80	55.157	Chrysemys_picta_bellii
ENSMZEG00005010008	usb1	80	30.043	ENSCSAVG00000000894	-	84	30.043	Ciona_savignyi
ENSMZEG00005010008	usb1	80	52.655	ENSCANG00000037135	USB1	94	49.799	Colobus_angolensis_palliatus
ENSMZEG00005010008	usb1	99	49.462	ENSCGRG00001011243	USB1	84	54.018	Cricetulus_griseus_chok1gshd
ENSMZEG00005010008	usb1	99	49.462	ENSCGRG00000013252	USB1	84	54.018	Cricetulus_griseus_crigri
ENSMZEG00005010008	usb1	99	65.125	ENSCSEG00000013881	usb1	88	69.835	Cynoglossus_semilaevis
ENSMZEG00005010008	usb1	80	69.604	ENSCVAG00000009252	usb1	97	69.604	Cyprinodon_variegatus
ENSMZEG00005010008	usb1	86	60.494	ENSDARG00000003841	usb1	81	63.393	Danio_rerio
ENSMZEG00005010008	usb1	99	48.239	ENSDORG00000001888	Usb1	85	53.571	Dipodomys_ordii
ENSMZEG00005010008	usb1	75	40.278	FBgn0037713	CG16790	81	40.278	Drosophila_melanogaster
ENSMZEG00005010008	usb1	99	41.577	ENSETEG00000019682	USB1	94	42.629	Echinops_telfairi
ENSMZEG00005010008	usb1	94	39.007	ENSEBUG00000005889	usb1	86	40.299	Eptatretus_burgeri
ENSMZEG00005010008	usb1	99	48.387	ENSEASG00005005484	USB1	85	53.571	Equus_asinus_asinus
ENSMZEG00005010008	usb1	99	48.201	ENSECAG00000019493	USB1	77	53.363	Equus_caballus
ENSMZEG00005010008	usb1	61	49.711	ENSEEUG00000000154	USB1	65	49.711	Erinaceus_europaeus
ENSMZEG00005010008	usb1	89	65.079	ENSELUG00000010974	usb1	92	65.079	Esox_lucius
ENSMZEG00005010008	usb1	83	51.282	ENSFCAG00000002693	USB1	88	51.282	Felis_catus
ENSMZEG00005010008	usb1	82	51.739	ENSFALG00000006876	USB1	92	49.796	Ficedula_albicollis
ENSMZEG00005010008	usb1	99	48.387	ENSFDAG00000010052	USB1	84	53.571	Fukomys_damarensis
ENSMZEG00005010008	usb1	88	63.745	ENSFHEG00000012334	usb1	88	66.818	Fundulus_heteroclitus
ENSMZEG00005010008	usb1	80	71.749	ENSGMOG00000004228	usb1	100	71.749	Gadus_morhua
ENSMZEG00005010008	usb1	79	54.709	ENSGALG00000035604	USB1	93	53.814	Gallus_gallus
ENSMZEG00005010008	usb1	100	70.070	ENSGAFG00000021890	usb1	94	70.498	Gambusia_affinis
ENSMZEG00005010008	usb1	88	74.000	ENSGACG00000003257	usb1	90	74.000	Gasterosteus_aculeatus
ENSMZEG00005010008	usb1	99	50.179	ENSGAGG00000022572	USB1	82	54.709	Gopherus_agassizii
ENSMZEG00005010008	usb1	80	53.540	ENSGGOG00000017147	USB1	94	50.602	Gorilla_gorilla
ENSMZEG00005010008	usb1	100	98.214	ENSHBUG00000009823	usb1	100	98.214	Haplochromis_burtoni
ENSMZEG00005010008	usb1	99	48.921	ENSHGLG00000016078	USB1	82	53.363	Heterocephalus_glaber_female
ENSMZEG00005010008	usb1	99	48.921	ENSHGLG00100005562	USB1	82	53.363	Heterocephalus_glaber_male
ENSMZEG00005010008	usb1	78	73.516	ENSHCOG00000015633	usb1	87	74.107	Hippocampus_comes
ENSMZEG00005010008	usb1	99	54.671	ENSIPUG00000008601	usb1	78	63.111	Ictalurus_punctatus
ENSMZEG00005010008	usb1	99	48.410	ENSSTOG00000007548	USB1	82	53.571	Ictidomys_tridecemlineatus
ENSMZEG00005010008	usb1	99	49.821	ENSJJAG00000021859	Usb1	84	54.018	Jaculus_jaculus
ENSMZEG00005010008	usb1	99	70.714	ENSKMAG00000007200	usb1	99	70.714	Kryptolebias_marmoratus
ENSMZEG00005010008	usb1	91	69.261	ENSLBEG00000008452	usb1	79	70.518	Labrus_bergylta
ENSMZEG00005010008	usb1	84	49.580	ENSLACG00000000105	USB1	66	57.812	Latimeria_chalumnae
ENSMZEG00005010008	usb1	99	53.901	ENSLOCG00000000465	usb1	92	54.054	Lepisosteus_oculatus
ENSMZEG00005010008	usb1	99	39.860	ENSLAFG00000002267	USB1	83	43.290	Loxodonta_africana
ENSMZEG00005010008	usb1	80	53.097	ENSMFAG00000003926	USB1	94	50.201	Macaca_fascicularis
ENSMZEG00005010008	usb1	80	53.097	ENSMMUG00000022669	USB1	94	50.201	Macaca_mulatta
ENSMZEG00005010008	usb1	80	52.655	ENSMNEG00000042487	USB1	94	49.799	Macaca_nemestrina
ENSMZEG00005010008	usb1	80	53.097	ENSMLEG00000028756	USB1	94	50.201	Mandrillus_leucophaeus
ENSMZEG00005010008	usb1	99	72.401	ENSMAMG00000015092	usb1	99	70.609	Mastacembelus_armatus
ENSMZEG00005010008	usb1	99	48.746	ENSMAUG00000007832	Usb1	84	53.571	Mesocricetus_auratus
ENSMZEG00005010008	usb1	80	53.571	ENSMICG00000004900	USB1	85	53.571	Microcebus_murinus
ENSMZEG00005010008	usb1	99	50.896	ENSMOCG00000022647	Usb1	84	54.911	Microtus_ochrogaster
ENSMZEG00005010008	usb1	80	75.893	ENSMMOG00000000490	usb1	87	75.893	Mola_mola
ENSMZEG00005010008	usb1	87	48.606	ENSMODG00000014067	USB1	94	48.606	Monodelphis_domestica
ENSMZEG00005010008	usb1	100	74.205	ENSMALG00000005930	usb1	100	74.205	Monopterus_albus
ENSMZEG00005010008	usb1	99	48.746	MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	Mus_caroli
ENSMZEG00005010008	usb1	99	49.104	ENSMUSG00000031792	Usb1	99	50.000	Mus_musculus
ENSMZEG00005010008	usb1	99	49.104	MGP_PahariEiJ_G0023019	Usb1	100	52.137	Mus_pahari
ENSMZEG00005010008	usb1	99	49.104	MGP_SPRETEiJ_G0032540	Usb1	84	54.911	Mus_spretus
ENSMZEG00005010008	usb1	99	48.746	ENSMPUG00000004684	USB1	80	53.125	Mustela_putorius_furo
ENSMZEG00005010008	usb1	80	54.464	ENSMLUG00000007400	USB1	97	54.464	Myotis_lucifugus
ENSMZEG00005010008	usb1	99	50.896	ENSNGAG00000009703	Usb1	90	50.584	Nannospalax_galili
ENSMZEG00005010008	usb1	100	88.571	ENSNBRG00000008747	usb1	100	92.523	Neolamprologus_brichardi
ENSMZEG00005010008	usb1	75	54.028	ENSNLEG00000003340	USB1	92	52.174	Nomascus_leucogenys
ENSMZEG00005010008	usb1	99	49.640	ENSODEG00000016214	USB1	90	52.500	Octodon_degus
ENSMZEG00005010008	usb1	99	95.341	ENSONIG00000011063	usb1	100	91.756	Oreochromis_niloticus
ENSMZEG00005010008	usb1	80	53.333	ENSOANG00000012118	USB1	94	53.333	Ornithorhynchus_anatinus
ENSMZEG00005010008	usb1	91	71.984	ENSORLG00000012479	usb1	95	71.429	Oryzias_latipes
ENSMZEG00005010008	usb1	88	73.171	ENSORLG00020018671	usb1	96	70.656	Oryzias_latipes_hni
ENSMZEG00005010008	usb1	91	71.984	ENSORLG00015009679	usb1	96	71.429	Oryzias_latipes_hsok
ENSMZEG00005010008	usb1	100	71.429	ENSOMEG00000012930	usb1	100	71.429	Oryzias_melastigma
ENSMZEG00005010008	usb1	80	50.000	ENSOGAG00000003273	USB1	94	46.586	Otolemur_garnettii
ENSMZEG00005010008	usb1	84	51.440	ENSOARG00000001107	USB1	93	51.440	Ovis_aries
ENSMZEG00005010008	usb1	80	53.097	ENSPPAG00000042137	USB1	94	50.201	Pan_paniscus
ENSMZEG00005010008	usb1	83	50.855	ENSPPRG00000024797	USB1	88	50.855	Panthera_pardus
ENSMZEG00005010008	usb1	83	50.427	ENSPTIG00000007506	USB1	88	50.427	Panthera_tigris_altaica
ENSMZEG00005010008	usb1	76	54.206	ENSPTRG00000008172	USB1	100	54.206	Pan_troglodytes
ENSMZEG00005010008	usb1	80	53.097	ENSPANG00000025138	USB1	94	50.201	Papio_anubis
ENSMZEG00005010008	usb1	98	55.636	ENSPKIG00000015109	usb1	81	59.836	Paramormyrops_kingsleyae
ENSMZEG00005010008	usb1	80	43.946	ENSPSIG00000004305	USB1	100	43.946	Pelodiscus_sinensis
ENSMZEG00005010008	usb1	79	68.919	ENSPMGG00000017725	usb1	85	68.919	Periophthalmus_magnuspinnatus
ENSMZEG00005010008	usb1	99	49.822	ENSPEMG00000016183	Usb1	89	49.027	Peromyscus_maniculatus_bairdii
ENSMZEG00005010008	usb1	77	49.772	ENSPMAG00000000462	usb1	93	49.545	Petromyzon_marinus
ENSMZEG00005010008	usb1	100	70.070	ENSPFOG00000011130	usb1	91	71.937	Poecilia_formosa
ENSMZEG00005010008	usb1	100	70.070	ENSPLAG00000009820	usb1	91	71.937	Poecilia_latipinna
ENSMZEG00005010008	usb1	100	70.423	ENSPMEG00000006402	usb1	91	72.332	Poecilia_mexicana
ENSMZEG00005010008	usb1	88	68.924	ENSPREG00000001047	usb1	89	72.273	Poecilia_reticulata
ENSMZEG00005010008	usb1	75	50.704	ENSPPYG00000007401	USB1	94	47.881	Pongo_abelii
ENSMZEG00005010008	usb1	99	48.746	ENSPCOG00000022612	USB1	85	53.125	Propithecus_coquereli
ENSMZEG00005010008	usb1	99	47.312	ENSPVAG00000004613	USB1	92	50.420	Pteropus_vampyrus
ENSMZEG00005010008	usb1	100	97.857	ENSPNYG00000022262	usb1	100	97.857	Pundamilia_nyererei
ENSMZEG00005010008	usb1	89	57.031	ENSPNAG00000011736	usb1	87	57.031	Pygocentrus_nattereri
ENSMZEG00005010008	usb1	99	49.104	ENSRNOG00000013216	Usb1	84	54.911	Rattus_norvegicus
ENSMZEG00005010008	usb1	80	50.000	ENSRBIG00000044466	USB1	100	53.738	Rhinopithecus_bieti
ENSMZEG00005010008	usb1	80	53.097	ENSRROG00000029211	USB1	94	50.201	Rhinopithecus_roxellana
ENSMZEG00005010008	usb1	80	53.097	ENSSBOG00000029362	USB1	94	49.799	Saimiri_boliviensis_boliviensis
ENSMZEG00005010008	usb1	77	51.152	ENSSHAG00000006993	USB1	89	51.786	Sarcophilus_harrisii
ENSMZEG00005010008	usb1	99	58.419	ENSSFOG00015023663	usb1	80	60.700	Scleropages_formosus
ENSMZEG00005010008	usb1	100	68.919	ENSSMAG00000015834	usb1	100	68.919	Scophthalmus_maximus
ENSMZEG00005010008	usb1	80	79.464	ENSSDUG00000002949	usb1	83	79.464	Seriola_dumerili
ENSMZEG00005010008	usb1	100	75.265	ENSSLDG00000014174	usb1	100	75.265	Seriola_lalandi_dorsalis
ENSMZEG00005010008	usb1	76	52.336	ENSSPUG00000006741	USB1	100	52.336	Sphenodon_punctatus
ENSMZEG00005010008	usb1	99	75.439	ENSSPAG00000007484	usb1	99	74.035	Stegastes_partitus
ENSMZEG00005010008	usb1	85	51.230	ENSSSCG00000002807	USB1	91	51.230	Sus_scrofa
ENSMZEG00005010008	usb1	75	53.081	ENSTGUG00000004792	USB1	87	51.802	Taeniopygia_guttata
ENSMZEG00005010008	usb1	99	68.817	ENSTRUG00000021069	usb1	92	72.984	Takifugu_rubripes
ENSMZEG00005010008	usb1	99	58.065	ENSTNIG00000000626	usb1	83	66.816	Tetraodon_nigroviridis
ENSMZEG00005010008	usb1	80	38.393	ENSTBEG00000001507	USB1	97	38.393	Tupaia_belangeri
ENSMZEG00005010008	usb1	99	50.179	ENSUAMG00000016823	USB1	83	54.464	Ursus_americanus
ENSMZEG00005010008	usb1	76	54.206	ENSUMAG00000021369	USB1	100	54.206	Ursus_maritimus
ENSMZEG00005010008	usb1	99	48.561	ENSVVUG00000023700	USB1	92	51.046	Vulpes_vulpes
ENSMZEG00005010008	usb1	75	55.399	ENSXETG00000013795	usb1	88	55.251	Xenopus_tropicalis
ENSMZEG00005010008	usb1	89	72.727	ENSXMAG00000024687	usb1	75	72.727	Xiphophorus_maculatus