EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005010485 (Gene tree)
Gene ID: 101471029
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 6022 bases
Position: chrLG19:13495873-13501894
Accession: 101471029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005013913	RRM_1	PF00076.22	3.6e-33	1	2
ENSMZEP00005013913	RRM_1	PF00076.22	3.6e-33	2	2
ENSMZEP00005013913	RRM_3	PF08777.11	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005014384	-	2118	XM_004539936	ENSMZEP00005013913	295 (aa)	XP_004539993	UPI000329E3EE

Gene Model

Click here to download ENSMZEG00005010485's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG
mze05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005010485's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005010485	srsf5a	100	88.079	ENSAPOG00000017395	srsf5a	78	92.437	Acanthochromis_polyacanthus
ENSMZEG00005010485	srsf5a	91	82.288	ENSACIG00000011892	srsf5a	96	94.891	Amphilophus_citrinellus
ENSMZEG00005010485	srsf5a	81	87.190	ENSAOCG00000014967	srsf5a	80	90.909	Amphiprion_ocellaris
ENSMZEG00005010485	srsf5a	81	87.190	ENSAPEG00000009297	srsf5a	80	90.909	Amphiprion_percula
ENSMZEG00005010485	srsf5a	91	91.791	ENSATEG00000000198	srsf5a	82	94.118	Anabas_testudineus
ENSMZEG00005010485	srsf5a	64	73.958	ENSAPLG00000002469	-	70	72.917	Anas_platyrhynchos
ENSMZEG00005010485	srsf5a	64	75.263	ENSACAG00000029015	-	68	73.822	Anolis_carolinensis
ENSMZEG00005010485	srsf5a	100	99.662	ENSACLG00000027166	srsf5a	100	99.662	Astatotilapia_calliptera
ENSMZEG00005010485	srsf5a	64	84.694	ENSAMXG00000030476	srsf5a	67	83.158	Astyanax_mexicanus
ENSMZEG00005010485	srsf5a	64	76.963	ENSCPBG00000021518	-	70	75.393	Chrysemys_picta_bellii
ENSMZEG00005010485	srsf5a	64	56.633	ENSCSAVG00000011376	-	78	58.163	Ciona_savignyi
ENSMZEG00005010485	srsf5a	81	93.416	ENSCSEG00000008109	srsf5a	77	93.361	Cynoglossus_semilaevis
ENSMZEG00005010485	srsf5a	80	84.362	ENSCVAG00000016982	srsf5a	96	84.211	Cyprinodon_variegatus
ENSMZEG00005010485	srsf5a	84	71.705	ENSDARG00000029818	srsf5a	100	80.576	Danio_rerio
ENSMZEG00005010485	srsf5a	64	75.980	ENSELUG00000020439	srsf5a	62	80.829	Esox_lucius
ENSMZEG00005010485	srsf5a	64	73.684	ENSFALG00000005098	-	64	73.158	Ficedula_albicollis
ENSMZEG00005010485	srsf5a	82	81.783	ENSFHEG00000003955	srsf5a	97	80.000	Fundulus_heteroclitus
ENSMZEG00005010485	srsf5a	64	84.737	ENSGMOG00000000869	srsf5a	94	84.737	Gadus_morhua
ENSMZEG00005010485	srsf5a	64	73.158	ENSGALG00000033259	SRSF5A	63	72.105	Gallus_gallus
ENSMZEG00005010485	srsf5a	82	72.400	ENSGAFG00000018237	srsf5a	78	61.538	Gambusia_affinis
ENSMZEG00005010485	srsf5a	64	76.963	ENSGAGG00000007312	-	70	75.393	Gopherus_agassizii
ENSMZEG00005010485	srsf5a	100	99.661	ENSHBUG00000014048	srsf5a	100	99.661	Haplochromis_burtoni
ENSMZEG00005010485	srsf5a	64	88.421	ENSHCOG00000017557	srsf5a	62	87.895	Hippocampus_comes
ENSMZEG00005010485	srsf5a	64	86.842	ENSIPUG00000003439	srsf5a	69	86.842	Ictalurus_punctatus
ENSMZEG00005010485	srsf5a	86	77.444	ENSKMAG00000014937	srsf5a	71	83.264	Kryptolebias_marmoratus
ENSMZEG00005010485	srsf5a	64	92.308	ENSLBEG00000017153	srsf5a	74	92.821	Labrus_bergylta
ENSMZEG00005010485	srsf5a	64	81.053	ENSLACG00000017874	-	70	80.526	Latimeria_chalumnae
ENSMZEG00005010485	srsf5a	64	81.633	ENSLOCG00000014075	srsf5a	61	83.158	Lepisosteus_oculatus
ENSMZEG00005010485	srsf5a	100	86.780	ENSMAMG00000000192	srsf5a	82	87.395	Mastacembelus_armatus
ENSMZEG00005010485	srsf5a	73	70.968	ENSMGAG00000011888	-	96	72.093	Meleagris_gallopavo
ENSMZEG00005010485	srsf5a	100	87.829	ENSMMOG00000009793	srsf5a	78	91.176	Mola_mola
ENSMZEG00005010485	srsf5a	100	81.017	ENSMALG00000021194	srsf5a	79	80.672	Monopterus_albus
ENSMZEG00005010485	srsf5a	100	99.661	ENSNBRG00000000771	srsf5a	100	99.661	Neolamprologus_brichardi
ENSMZEG00005010485	srsf5a	100	99.661	ENSONIG00000019583	srsf5a	100	99.661	Oreochromis_niloticus
ENSMZEG00005010485	srsf5a	80	86.555	ENSORLG00000009268	srsf5a	83	84.874	Oryzias_latipes
ENSMZEG00005010485	srsf5a	80	86.555	ENSORLG00020003281	srsf5	83	84.874	Oryzias_latipes_hni
ENSMZEG00005010485	srsf5a	80	86.555	ENSORLG00015023075	srsf5	83	84.874	Oryzias_latipes_hsok
ENSMZEG00005010485	srsf5a	80	85.654	ENSOMEG00000000628	srsf5a	83	84.874	Oryzias_melastigma
ENSMZEG00005010485	srsf5a	64	82.234	ENSPKIG00000002054	srsf5a	68	85.263	Paramormyrops_kingsleyae
ENSMZEG00005010485	srsf5a	64	76.440	ENSPSIG00000008238	-	69	73.298	Pelodiscus_sinensis
ENSMZEG00005010485	srsf5a	82	66.667	ENSPMGG00000020125	srsf5a	55	80.000	Periophthalmus_magnuspinnatus
ENSMZEG00005010485	srsf5a	82	83.529	ENSPFOG00000022993	srsf5a	78	82.731	Poecilia_formosa
ENSMZEG00005010485	srsf5a	82	83.465	ENSPLAG00000005508	srsf5a	77	82.661	Poecilia_latipinna
ENSMZEG00005010485	srsf5a	82	83.922	ENSPMEG00000016339	srsf5a	78	83.133	Poecilia_mexicana
ENSMZEG00005010485	srsf5a	82	83.203	ENSPREG00000018091	srsf5a	79	82.800	Poecilia_reticulata
ENSMZEG00005010485	srsf5a	100	100.000	ENSPNYG00000021245	srsf5a	100	100.000	Pundamilia_nyererei
ENSMZEG00005010485	srsf5a	94	61.905	ENSPNAG00000021333	srsf5a	66	83.684	Pygocentrus_nattereri
ENSMZEG00005010485	srsf5a	64	81.726	ENSSFOG00015008377	srsf5	66	84.211	Scleropages_formosus
ENSMZEG00005010485	srsf5a	100	82.581	ENSSMAG00000010899	srsf5a	83	88.142	Scophthalmus_maximus
ENSMZEG00005010485	srsf5a	91	88.148	ENSSDUG00000006103	srsf5a	80	91.176	Seriola_dumerili
ENSMZEG00005010485	srsf5a	100	88.255	ENSSLDG00000004146	srsf5a	79	91.597	Seriola_lalandi_dorsalis
ENSMZEG00005010485	srsf5a	64	72.775	ENSSPUG00000002052	-	68	71.728	Sphenodon_punctatus
ENSMZEG00005010485	srsf5a	81	91.176	ENSSPAG00000002821	srsf5a	80	91.597	Stegastes_partitus
ENSMZEG00005010485	srsf5a	64	74.211	ENSTGUG00000011492	-	68	71.579	Taeniopygia_guttata
ENSMZEG00005010485	srsf5a	100	91.246	ENSTRUG00000022908	srsf5a	81	92.917	Takifugu_rubripes
ENSMZEG00005010485	srsf5a	99	62.081	ENSXETG00000017937	srsf5a	72	79.058	Xenopus_tropicalis
ENSMZEG00005010485	srsf5a	82	82.869	ENSXCOG00000015338	srsf5a	78	83.265	Xiphophorus_couchianus
ENSMZEG00005010485	srsf5a	82	83.137	ENSXMAG00000012823	srsf5a	61	88.601	Xiphophorus_maculatus