EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005010920 (Gene tree)
Gene ID: 101465200
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 21793 bases
Position: chrLG4:12602069-12623861
Accession: 101465200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005014610	RRM_1	PF00076.22	0.0002	1	1
ENSMZEP00005014585	RRM_1	PF00076.22	0.00021	1	1
ENSMZEP00005014570	RRM_1	PF00076.22	0.00022	1	1
ENSMZEP00005014542	RRM_1	PF00076.22	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005015053	-	5337	XM_004558426	ENSMZEP00005014570	1778 (aa)	XP_004558483	-
ENSMZET00005015025	-	5448	XM_004558424	ENSMZEP00005014542	1815 (aa)	XP_004558481	-
ENSMZET00005015068	-	5232	XM_012921094	ENSMZEP00005014585	1704 (aa)	XP_012776548	UPI000E405D38
ENSMZET00005015093	-	5004	-	ENSMZEP00005014610	1667 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005010920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005010920's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005010920	tnrc6c1	98	53.275	ENSG00000078687	TNRC6C	97	50.099	Homo_sapiens
ENSMZEG00005010920	tnrc6c1	99	85.651	ENSAPOG00000019749	tnrc6c1	99	86.463	Acanthochromis_polyacanthus
ENSMZEG00005010920	tnrc6c1	98	51.740	ENSAMEG00000013756	TNRC6C	99	47.597	Ailuropoda_melanoleuca
ENSMZEG00005010920	tnrc6c1	100	87.789	ENSACIG00000008075	tnrc6c1	100	87.789	Amphilophus_citrinellus
ENSMZEG00005010920	tnrc6c1	100	86.510	ENSAOCG00000023968	tnrc6c1	100	87.084	Amphiprion_ocellaris
ENSMZEG00005010920	tnrc6c1	100	86.682	ENSAPEG00000009020	tnrc6c1	100	87.256	Amphiprion_percula
ENSMZEG00005010920	tnrc6c1	99	53.154	ENSAPLG00000005456	TNRC6C	99	47.093	Anas_platyrhynchos
ENSMZEG00005010920	tnrc6c1	99	49.392	ENSACAG00000016198	TNRC6C	96	48.018	Anolis_carolinensis
ENSMZEG00005010920	tnrc6c1	99	48.238	ENSANAG00000021554	TNRC6C	98	50.563	Aotus_nancymaae
ENSMZEG00005010920	tnrc6c1	100	100.000	ENSACLG00000000424	tnrc6c1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005010920	tnrc6c1	97	52.159	ENSBTAG00000018658	TNRC6C	100	48.895	Bos_taurus
ENSMZEG00005010920	tnrc6c1	99	48.528	ENSCJAG00000019431	TNRC6C	98	50.297	Callithrix_jacchus
ENSMZEG00005010920	tnrc6c1	99	52.479	ENSCAFG00000005224	TNRC6C	97	47.024	Canis_familiaris
ENSMZEG00005010920	tnrc6c1	98	52.898	ENSCAFG00020006661	TNRC6C	97	49.769	Canis_lupus_dingo
ENSMZEG00005010920	tnrc6c1	98	52.642	ENSCHIG00000026004	TNRC6C	100	50.102	Capra_hircus
ENSMZEG00005010920	tnrc6c1	92	48.854	ENSTSYG00000005403	TNRC6C	100	49.834	Carlito_syrichta
ENSMZEG00005010920	tnrc6c1	93	49.926	ENSCAPG00000007307	TNRC6C	97	46.436	Cavia_aperea
ENSMZEG00005010920	tnrc6c1	93	53.682	ENSCPOG00000000467	TNRC6C	99	47.246	Cavia_porcellus
ENSMZEG00005010920	tnrc6c1	99	48.713	ENSCCAG00000030524	TNRC6C	97	50.529	Cebus_capucinus
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSCATG00000033135	TNRC6C	100	49.390	Cercocebus_atys
ENSMZEG00005010920	tnrc6c1	98	52.277	ENSCLAG00000011139	TNRC6C	97	47.411	Chinchilla_lanigera
ENSMZEG00005010920	tnrc6c1	99	48.707	ENSCSAG00000005167	TNRC6C	97	46.957	Chlorocebus_sabaeus
ENSMZEG00005010920	tnrc6c1	64	67.227	ENSCHOG00000000088	TNRC6C	65	66.387	Choloepus_hoffmanni
ENSMZEG00005010920	tnrc6c1	99	48.499	ENSCPBG00000027960	TNRC6C	100	49.778	Chrysemys_picta_bellii
ENSMZEG00005010920	tnrc6c1	79	53.533	ENSCANG00000041771	TNRC6C	100	49.445	Colobus_angolensis_palliatus
ENSMZEG00005010920	tnrc6c1	99	46.400	ENSCGRG00001022686	Tnrc6c	99	49.863	Cricetulus_griseus_chok1gshd
ENSMZEG00005010920	tnrc6c1	99	46.544	ENSCGRG00000018041	Tnrc6c	99	49.863	Cricetulus_griseus_crigri
ENSMZEG00005010920	tnrc6c1	99	76.684	ENSCSEG00000012744	tnrc6c1	100	76.406	Cynoglossus_semilaevis
ENSMZEG00005010920	tnrc6c1	91	74.461	ENSDARG00000076847	tnrc6c1	96	74.347	Danio_rerio
ENSMZEG00005010920	tnrc6c1	99	47.890	ENSDNOG00000003247	TNRC6C	97	47.110	Dasypus_novemcinctus
ENSMZEG00005010920	tnrc6c1	78	49.588	ENSDORG00000004558	Tnrc6c	95	49.211	Dipodomys_ordii
ENSMZEG00005010920	tnrc6c1	87	53.416	ENSETEG00000005527	TNRC6C	82	53.068	Echinops_telfairi
ENSMZEG00005010920	tnrc6c1	90	51.294	ENSEASG00005004799	TNRC6C	100	47.553	Equus_asinus_asinus
ENSMZEG00005010920	tnrc6c1	98	52.517	ENSECAG00000012486	TNRC6C	98	46.683	Equus_caballus
ENSMZEG00005010920	tnrc6c1	93	55.026	ENSEEUG00000010008	TNRC6C	94	52.304	Erinaceus_europaeus
ENSMZEG00005010920	tnrc6c1	99	51.719	ENSFCAG00000028358	TNRC6C	100	47.971	Felis_catus
ENSMZEG00005010920	tnrc6c1	78	53.557	ENSFALG00000000848	TNRC6C	100	48.994	Ficedula_albicollis
ENSMZEG00005010920	tnrc6c1	97	48.146	ENSFDAG00000010368	TNRC6C	97	51.265	Fukomys_damarensis
ENSMZEG00005010920	tnrc6c1	100	80.161	ENSFHEG00000002936	tnrc6c1	100	79.931	Fundulus_heteroclitus
ENSMZEG00005010920	tnrc6c1	96	55.532	ENSGALG00000001725	TNRC6C	100	49.750	Gallus_gallus
ENSMZEG00005010920	tnrc6c1	100	80.800	ENSGAFG00000019019	tnrc6c1	100	81.024	Gambusia_affinis
ENSMZEG00005010920	tnrc6c1	100	73.291	ENSGACG00000012320	tnrc6c1	98	74.011	Gasterosteus_aculeatus
ENSMZEG00005010920	tnrc6c1	100	48.789	ENSGAGG00000022043	TNRC6C	100	48.303	Gopherus_agassizii
ENSMZEG00005010920	tnrc6c1	98	52.961	ENSGGOG00000011304	TNRC6C	98	50.297	Gorilla_gorilla
ENSMZEG00005010920	tnrc6c1	100	99.775	ENSHBUG00000010846	tnrc6c1	100	99.775	Haplochromis_burtoni
ENSMZEG00005010920	tnrc6c1	98	51.633	ENSHGLG00000004809	TNRC6C	95	50.922	Heterocephalus_glaber_female
ENSMZEG00005010920	tnrc6c1	98	51.256	ENSHGLG00100012597	TNRC6C	95	50.508	Heterocephalus_glaber_male
ENSMZEG00005010920	tnrc6c1	99	60.213	ENSIPUG00000000818	tnrc6c1	98	60.637	Ictalurus_punctatus
ENSMZEG00005010920	tnrc6c1	97	52.628	ENSSTOG00000009101	TNRC6C	93	51.961	Ictidomys_tridecemlineatus
ENSMZEG00005010920	tnrc6c1	97	52.221	ENSJJAG00000017055	Tnrc6c	93	50.916	Jaculus_jaculus
ENSMZEG00005010920	tnrc6c1	98	75.688	ENSKMAG00000021023	tnrc6c1	100	74.891	Kryptolebias_marmoratus
ENSMZEG00005010920	tnrc6c1	70	66.667	ENSLACG00000015283	TNRC6C	95	66.480	Latimeria_chalumnae
ENSMZEG00005010920	tnrc6c1	100	77.939	ENSLOCG00000013377	tnrc6c1	94	78.374	Lepisosteus_oculatus
ENSMZEG00005010920	tnrc6c1	89	63.305	ENSLAFG00000011122	TNRC6C	98	63.412	Loxodonta_africana
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSMFAG00000043943	TNRC6C	100	49.390	Macaca_fascicularis
ENSMZEG00005010920	tnrc6c1	99	48.813	ENSMMUG00000011924	TNRC6C	100	48.222	Macaca_mulatta
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSMNEG00000030405	TNRC6C	98	50.464	Macaca_nemestrina
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSMLEG00000033436	TNRC6C	100	49.390	Mandrillus_leucophaeus
ENSMZEG00005010920	tnrc6c1	100	80.983	ENSMAMG00000023613	tnrc6c1	99	82.391	Mastacembelus_armatus
ENSMZEG00005010920	tnrc6c1	91	67.376	ENSMGAG00000003906	TNRC6C	91	67.376	Meleagris_gallopavo
ENSMZEG00005010920	tnrc6c1	91	49.538	ENSMAUG00000021618	Tnrc6c	100	47.078	Mesocricetus_auratus
ENSMZEG00005010920	tnrc6c1	99	47.847	ENSMICG00000003952	TNRC6C	100	49.446	Microcebus_murinus
ENSMZEG00005010920	tnrc6c1	98	50.474	ENSMOCG00000015879	Tnrc6c	96	50.511	Microtus_ochrogaster
ENSMZEG00005010920	tnrc6c1	94	78.826	ENSMMOG00000005203	tnrc6c1	100	80.446	Mola_mola
ENSMZEG00005010920	tnrc6c1	99	47.632	ENSMODG00000001785	TNRC6C	97	51.057	Monodelphis_domestica
ENSMZEG00005010920	tnrc6c1	97	49.868	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	49.932	Mus_caroli
ENSMZEG00005010920	tnrc6c1	97	50.066	ENSMUSG00000025571	Tnrc6c	97	50.068	Mus_musculus
ENSMZEG00005010920	tnrc6c1	98	50.946	MGP_PahariEiJ_G0018593	Tnrc6c	97	49.932	Mus_pahari
ENSMZEG00005010920	tnrc6c1	97	49.868	MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.831	Mus_spretus
ENSMZEG00005010920	tnrc6c1	99	52.374	ENSMPUG00000013348	TNRC6C	94	50.896	Mustela_putorius_furo
ENSMZEG00005010920	tnrc6c1	93	53.637	ENSMLUG00000014431	TNRC6C	96	45.401	Myotis_lucifugus
ENSMZEG00005010920	tnrc6c1	79	50.677	ENSNGAG00000012203	Tnrc6c	73	50.305	Nannospalax_galili
ENSMZEG00005010920	tnrc6c1	100	97.020	ENSNBRG00000005344	tnrc6c1	99	99.099	Neolamprologus_brichardi
ENSMZEG00005010920	tnrc6c1	99	47.422	ENSNLEG00000000047	TNRC6C	97	48.896	Nomascus_leucogenys
ENSMZEG00005010920	tnrc6c1	93	58.292	ENSMEUG00000005104	TNRC6C	96	65.324	Notamacropus_eugenii
ENSMZEG00005010920	tnrc6c1	93	52.206	ENSODEG00000012499	TNRC6C	97	51.327	Octodon_degus
ENSMZEG00005010920	tnrc6c1	94	95.893	ENSONIG00000002210	tnrc6c1	100	98.153	Oreochromis_niloticus
ENSMZEG00005010920	tnrc6c1	71	90.323	ENSOANG00000009758	-	68	90.323	Ornithorhynchus_anatinus
ENSMZEG00005010920	tnrc6c1	54	56.857	ENSOCUG00000006122	TNRC6C	87	55.215	Oryctolagus_cuniculus
ENSMZEG00005010920	tnrc6c1	100	74.899	ENSORLG00000009837	tnrc6c1	100	83.636	Oryzias_latipes
ENSMZEG00005010920	tnrc6c1	100	76.684	ENSORLG00020016510	tnrc6c1	100	77.839	Oryzias_latipes_hni
ENSMZEG00005010920	tnrc6c1	78	73.412	ENSORLG00015000171	tnrc6c1	97	74.251	Oryzias_latipes_hsok
ENSMZEG00005010920	tnrc6c1	100	78.238	ENSOMEG00000000357	tnrc6c1	100	78.654	Oryzias_melastigma
ENSMZEG00005010920	tnrc6c1	92	52.994	ENSOGAG00000007197	TNRC6C	100	48.832	Otolemur_garnettii
ENSMZEG00005010920	tnrc6c1	94	49.819	ENSOARG00000006041	TNRC6C	97	46.014	Ovis_aries
ENSMZEG00005010920	tnrc6c1	98	53.243	ENSPPAG00000027160	TNRC6C	98	50.297	Pan_paniscus
ENSMZEG00005010920	tnrc6c1	79	51.652	ENSPPRG00000018881	TNRC6C	98	50.918	Panthera_pardus
ENSMZEG00005010920	tnrc6c1	86	56.280	ENSPTIG00000008791	TNRC6C	87	54.621	Panthera_tigris_altaica
ENSMZEG00005010920	tnrc6c1	98	53.243	ENSPTRG00000009699	TNRC6C	98	50.297	Pan_troglodytes
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSPANG00000019994	TNRC6C	98	50.464	Papio_anubis
ENSMZEG00005010920	tnrc6c1	94	56.199	ENSPKIG00000005428	tnrc6c1	100	56.582	Paramormyrops_kingsleyae
ENSMZEG00005010920	tnrc6c1	96	53.352	ENSPSIG00000018069	TNRC6C	99	48.287	Pelodiscus_sinensis
ENSMZEG00005010920	tnrc6c1	84	79.365	ENSPMGG00000022911	tnrc6c1	98	80.723	Periophthalmus_magnuspinnatus
ENSMZEG00005010920	tnrc6c1	99	50.198	ENSPEMG00000009785	Tnrc6c	100	47.723	Peromyscus_maniculatus_bairdii
ENSMZEG00005010920	tnrc6c1	99	81.441	ENSPFOG00000012560	tnrc6c1	99	80.451	Poecilia_formosa
ENSMZEG00005010920	tnrc6c1	94	79.451	ENSPLAG00000021055	tnrc6c1	100	81.110	Poecilia_latipinna
ENSMZEG00005010920	tnrc6c1	98	53.533	ENSPPYG00000008679	TNRC6C	96	47.134	Pongo_abelii
ENSMZEG00005010920	tnrc6c1	84	61.822	ENSPCAG00000012510	TNRC6C	89	66.140	Procavia_capensis
ENSMZEG00005010920	tnrc6c1	94	48.104	ENSPCOG00000021451	TNRC6C	100	49.530	Propithecus_coquereli
ENSMZEG00005010920	tnrc6c1	87	66.949	ENSPVAG00000002008	TNRC6C	95	66.102	Pteropus_vampyrus
ENSMZEG00005010920	tnrc6c1	100	99.824	ENSPNYG00000014477	tnrc6c1	100	99.824	Pundamilia_nyererei
ENSMZEG00005010920	tnrc6c1	78	51.513	ENSRNOG00000022395	Tnrc6c	98	46.979	Rattus_norvegicus
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSRBIG00000027777	TNRC6C	100	48.806	Rhinopithecus_bieti
ENSMZEG00005010920	tnrc6c1	99	48.660	ENSRROG00000042912	TNRC6C	100	48.806	Rhinopithecus_roxellana
ENSMZEG00005010920	tnrc6c1	99	48.687	ENSSBOG00000023981	TNRC6C	100	49.445	Saimiri_boliviensis_boliviensis
ENSMZEG00005010920	tnrc6c1	53	65.635	ENSSHAG00000018330	-	99	64.839	Sarcophilus_harrisii
ENSMZEG00005010920	tnrc6c1	99	58.704	ENSSFOG00015006475	tnrc6c1	99	58.395	Scleropages_formosus
ENSMZEG00005010920	tnrc6c1	54	61.398	ENSSFOG00015004735	-	99	67.095	Scleropages_formosus
ENSMZEG00005010920	tnrc6c1	100	80.597	ENSSMAG00000012761	tnrc6c1	100	80.997	Scophthalmus_maximus
ENSMZEG00005010920	tnrc6c1	99	82.920	ENSSDUG00000002366	tnrc6c1	99	84.072	Seriola_dumerili
ENSMZEG00005010920	tnrc6c1	94	82.450	ENSSLDG00000025613	tnrc6c1	100	84.582	Seriola_lalandi_dorsalis
ENSMZEG00005010920	tnrc6c1	83	61.654	ENSSARG00000006816	TNRC6C	90	66.387	Sorex_araneus
ENSMZEG00005010920	tnrc6c1	79	55.714	ENSSPUG00000007341	TNRC6C	95	51.862	Sphenodon_punctatus
ENSMZEG00005010920	tnrc6c1	98	84.633	ENSSPAG00000014977	tnrc6c1	98	85.570	Stegastes_partitus
ENSMZEG00005010920	tnrc6c1	78	64.348	ENSSSCG00000034373	TNRC6C	81	69.120	Sus_scrofa
ENSMZEG00005010920	tnrc6c1	94	53.544	ENSTGUG00000007733	TNRC6C	99	48.240	Taeniopygia_guttata
ENSMZEG00005010920	tnrc6c1	99	75.590	ENSTRUG00000011685	tnrc6c1	100	75.120	Takifugu_rubripes
ENSMZEG00005010920	tnrc6c1	99	70.962	ENSTNIG00000005273	tnrc6c1	100	78.454	Tetraodon_nigroviridis
ENSMZEG00005010920	tnrc6c1	65	48.114	ENSTBEG00000005046	TNRC6C	100	47.390	Tupaia_belangeri
ENSMZEG00005010920	tnrc6c1	97	51.501	ENSTTRG00000010828	TNRC6C	99	47.905	Tursiops_truncatus
ENSMZEG00005010920	tnrc6c1	98	50.878	ENSUMAG00000013614	TNRC6C	98	49.601	Ursus_maritimus
ENSMZEG00005010920	tnrc6c1	51	54.932	ENSVPAG00000006765	-	98	49.358	Vicugna_pacos
ENSMZEG00005010920	tnrc6c1	80	54.229	ENSVVUG00000015268	TNRC6C	82	52.981	Vulpes_vulpes
ENSMZEG00005010920	tnrc6c1	85	48.864	ENSXETG00000019470	tnrc6c	99	46.810	Xenopus_tropicalis
ENSMZEG00005010920	tnrc6c1	100	80.905	ENSXMAG00000025971	tnrc6c1	100	81.336	Xiphophorus_maculatus