EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005011856 (Gene tree)
Gene ID: 101483588
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 6811 bases
Position: chrAGTA05000254.1:26300-33110
Accession: 101483588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005015783	LSM	PF01423.22	7.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005016291	-	1212	XM_004558940	ENSMZEP00005015783	240 (aa)	XP_004558997	UPI00025F8320

Gene Model

Click here to download ENSMZEG00005011856's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005011856's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005011856	snrpb	69	94.643	ENSG00000125835	SNRPB	74	98.077	Homo_sapiens
ENSMZEG00005011856	snrpb	100	100.000	ENSAPOG00000019606	snrpb	82	100.000	Acanthochromis_polyacanthus
ENSMZEG00005011856	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	74	92.778	Ailuropoda_melanoleuca
ENSMZEG00005011856	snrpb	93	100.000	ENSACIG00000014480	snrpb	99	100.000	Amphilophus_citrinellus
ENSMZEG00005011856	snrpb	100	99.583	ENSAOCG00000006876	snrpb	100	99.583	Amphiprion_ocellaris
ENSMZEG00005011856	snrpb	100	99.583	ENSAPEG00000021585	snrpb	100	99.583	Amphiprion_percula
ENSMZEG00005011856	snrpb	100	99.167	ENSATEG00000009836	snrpb	100	99.167	Anabas_testudineus
ENSMZEG00005011856	snrpb	66	95.625	ENSACAG00000002053	SNRPB	75	93.064	Anolis_carolinensis
ENSMZEG00005011856	snrpb	69	87.500	ENSANAG00000036271	-	73	84.530	Aotus_nancymaae
ENSMZEG00005011856	snrpb	69	94.643	ENSANAG00000024443	-	78	92.818	Aotus_nancymaae
ENSMZEG00005011856	snrpb	100	100.000	ENSACLG00000014707	snrpb	100	100.000	Astatotilapia_calliptera
ENSMZEG00005011856	snrpb	99	97.899	ENSAMXG00000029434	snrpb	99	97.899	Astyanax_mexicanus
ENSMZEG00005011856	snrpb	85	86.058	ENSBTAG00000001038	SNRPB	78	92.818	Bos_taurus
ENSMZEG00005011856	snrpb	69	94.643	ENSCJAG00000020971	-	78	92.818	Callithrix_jacchus
ENSMZEG00005011856	snrpb	89	84.259	ENSCJAG00000023097	-	75	85.083	Callithrix_jacchus
ENSMZEG00005011856	snrpb	60	84.247	ENSCAFG00000031109	-	76	80.769	Canis_familiaris
ENSMZEG00005011856	snrpb	69	94.643	ENSCAFG00000006693	-	78	92.818	Canis_familiaris
ENSMZEG00005011856	snrpb	69	94.643	ENSCAFG00020016981	-	75	92.818	Canis_lupus_dingo
ENSMZEG00005011856	snrpb	69	94.643	ENSCHIG00000025449	-	78	92.818	Capra_hircus
ENSMZEG00005011856	snrpb	69	94.643	ENSTSYG00000014498	-	78	92.818	Carlito_syrichta
ENSMZEG00005011856	snrpb	96	66.379	ENSTSYG00000032303	-	65	72.626	Carlito_syrichta
ENSMZEG00005011856	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	78	92.778	Cavia_aperea
ENSMZEG00005011856	snrpb	69	94.643	ENSCPOG00000039408	SNRPB	78	92.818	Cavia_porcellus
ENSMZEG00005011856	snrpb	69	94.643	ENSCCAG00000026002	SNRPB	78	92.818	Cebus_capucinus
ENSMZEG00005011856	snrpb	53	83.465	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSMZEG00005011856	snrpb	69	94.643	ENSCATG00000030230	SNRPB	78	92.818	Cercocebus_atys
ENSMZEG00005011856	snrpb	69	94.643	ENSCLAG00000012442	SNRPB	76	92.818	Chinchilla_lanigera
ENSMZEG00005011856	snrpb	69	94.643	ENSCSAG00000010840	SNRPB	78	92.818	Chlorocebus_sabaeus
ENSMZEG00005011856	snrpb	69	96.429	ENSCPBG00000026801	SNRPB	79	93.923	Chrysemys_picta_bellii
ENSMZEG00005011856	snrpb	69	94.643	ENSCANG00000019461	SNRPB	78	92.818	Colobus_angolensis_palliatus
ENSMZEG00005011856	snrpb	69	94.643	ENSCGRG00001023046	Snrpb	78	92.818	Cricetulus_griseus_chok1gshd
ENSMZEG00005011856	snrpb	67	94.479	ENSCGRG00000010423	Snrpb	77	92.486	Cricetulus_griseus_crigri
ENSMZEG00005011856	snrpb	100	98.333	ENSCSEG00000020328	snrpb	100	98.333	Cynoglossus_semilaevis
ENSMZEG00005011856	snrpb	100	97.095	ENSDARG00000011125	snrpb	100	97.095	Danio_rerio
ENSMZEG00005011856	snrpb	69	94.643	ENSDNOG00000015545	-	75	92.818	Dasypus_novemcinctus
ENSMZEG00005011856	snrpb	69	88.690	ENSDNOG00000007896	-	74	86.188	Dasypus_novemcinctus
ENSMZEG00005011856	snrpb	67	94.444	ENSDORG00000029558	Snrpb	76	92.571	Dipodomys_ordii
ENSMZEG00005011856	snrpb	77	62.437	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSMZEG00005011856	snrpb	69	73.810	ENSETEG00000006830	SNRPB	79	72.376	Echinops_telfairi
ENSMZEG00005011856	snrpb	76	79.235	ENSEBUG00000007467	SNRPB	62	87.919	Eptatretus_burgeri
ENSMZEG00005011856	snrpb	69	94.048	ENSEASG00005012991	SNRPB	78	92.265	Equus_asinus_asinus
ENSMZEG00005011856	snrpb	69	94.643	ENSECAG00000011944	SNRPB	78	92.818	Equus_caballus
ENSMZEG00005011856	snrpb	69	94.643	ENSEEUG00000015568	SNRPB	64	92.818	Erinaceus_europaeus
ENSMZEG00005011856	snrpb	99	97.890	ENSELUG00000014564	snrpb	99	97.890	Esox_lucius
ENSMZEG00005011856	snrpb	69	94.643	ENSFCAG00000034090	-	78	92.818	Felis_catus
ENSMZEG00005011856	snrpb	66	96.250	ENSFALG00000004866	SNRPB	73	94.083	Ficedula_albicollis
ENSMZEG00005011856	snrpb	69	94.643	ENSFDAG00000009937	SNRPB	78	92.818	Fukomys_damarensis
ENSMZEG00005011856	snrpb	69	96.429	ENSGALG00000035421	SNRPN	74	94.350	Gallus_gallus
ENSMZEG00005011856	snrpb	94	98.230	ENSGAFG00000019558	snrpb	99	98.230	Gambusia_affinis
ENSMZEG00005011856	snrpb	100	98.333	ENSGACG00000003262	snrpb	100	98.333	Gasterosteus_aculeatus
ENSMZEG00005011856	snrpb	69	96.429	ENSGAGG00000001308	SNRPB	75	93.923	Gopherus_agassizii
ENSMZEG00005011856	snrpb	69	94.643	ENSGGOG00000016138	SNRPB	78	92.818	Gorilla_gorilla
ENSMZEG00005011856	snrpb	100	100.000	ENSHBUG00000008369	snrpb	100	100.000	Haplochromis_burtoni
ENSMZEG00005011856	snrpb	63	86.000	ENSHGLG00000016505	-	84	81.714	Heterocephalus_glaber_female
ENSMZEG00005011856	snrpb	69	94.643	ENSHGLG00000016241	-	78	92.818	Heterocephalus_glaber_female
ENSMZEG00005011856	snrpb	69	94.643	ENSHGLG00100012877	-	78	92.818	Heterocephalus_glaber_male
ENSMZEG00005011856	snrpb	63	86.000	ENSHGLG00100004178	-	84	81.714	Heterocephalus_glaber_male
ENSMZEG00005011856	snrpb	100	98.750	ENSHCOG00000014888	snrpb	100	98.750	Hippocampus_comes
ENSMZEG00005011856	snrpb	99	97.479	ENSIPUG00000024569	SNRPB	99	97.479	Ictalurus_punctatus
ENSMZEG00005011856	snrpb	90	70.698	ENSSTOG00000027821	-	62	94.853	Ictidomys_tridecemlineatus
ENSMZEG00005011856	snrpb	69	92.857	ENSSTOG00000033664	-	75	91.160	Ictidomys_tridecemlineatus
ENSMZEG00005011856	snrpb	69	94.643	ENSJJAG00000024170	Snrpb	78	92.818	Jaculus_jaculus
ENSMZEG00005011856	snrpb	95	98.684	ENSKMAG00000014494	snrpb	93	98.684	Kryptolebias_marmoratus
ENSMZEG00005011856	snrpb	100	99.167	ENSLBEG00000005678	snrpb	100	99.167	Labrus_bergylta
ENSMZEG00005011856	snrpb	75	94.536	ENSLACG00000011459	SNRPB	75	93.923	Latimeria_chalumnae
ENSMZEG00005011856	snrpb	99	97.899	ENSLOCG00000002687	snrpb	99	97.899	Lepisosteus_oculatus
ENSMZEG00005011856	snrpb	69	90.419	ENSLAFG00000017588	SNRPB	77	88.889	Loxodonta_africana
ENSMZEG00005011856	snrpb	69	94.643	ENSMFAG00000038756	SNRPB	78	92.818	Macaca_fascicularis
ENSMZEG00005011856	snrpb	69	94.643	ENSMMUG00000010050	SNRPB	78	92.818	Macaca_mulatta
ENSMZEG00005011856	snrpb	69	94.643	ENSMNEG00000027954	SNRPB	78	92.818	Macaca_nemestrina
ENSMZEG00005011856	snrpb	69	94.643	ENSMLEG00000022346	SNRPB	78	92.818	Mandrillus_leucophaeus
ENSMZEG00005011856	snrpb	99	100.000	ENSMAMG00000009294	snrpb	97	100.000	Mastacembelus_armatus
ENSMZEG00005011856	snrpb	69	94.643	ENSMICG00000016519	SNRPB	78	92.818	Microcebus_murinus
ENSMZEG00005011856	snrpb	74	83.978	ENSMICG00000015983	-	83	82.320	Microcebus_murinus
ENSMZEG00005011856	snrpb	58	78.417	ENSMOCG00000021362	-	75	74.860	Microtus_ochrogaster
ENSMZEG00005011856	snrpb	69	94.048	ENSMOCG00000002892	-	78	92.265	Microtus_ochrogaster
ENSMZEG00005011856	snrpb	95	99.119	ENSMMOG00000013226	snrpb	97	99.119	Mola_mola
ENSMZEG00005011856	snrpb	100	99.167	ENSMALG00000020839	snrpb	81	99.167	Monopterus_albus
ENSMZEG00005011856	snrpb	69	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	98.077	Mus_caroli
ENSMZEG00005011856	snrpb	69	94.643	ENSMUSG00000027404	Snrpb	74	98.077	Mus_musculus
ENSMZEG00005011856	snrpb	69	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	98.077	Mus_pahari
ENSMZEG00005011856	snrpb	69	94.643	MGP_SPRETEiJ_G0025213	Snrpb	73	98.077	Mus_spretus
ENSMZEG00005011856	snrpb	69	94.643	ENSMPUG00000009283	SNRPB	78	92.818	Mustela_putorius_furo
ENSMZEG00005011856	snrpb	69	91.071	ENSMLUG00000016951	SNRPB	75	89.503	Myotis_lucifugus
ENSMZEG00005011856	snrpb	69	94.643	ENSNGAG00000012051	Snrpb	78	92.818	Nannospalax_galili
ENSMZEG00005011856	snrpb	95	97.807	ENSNBRG00000006353	snrpb	87	97.807	Neolamprologus_brichardi
ENSMZEG00005011856	snrpb	69	94.643	ENSNLEG00000029067	SNRPB	76	92.778	Nomascus_leucogenys
ENSMZEG00005011856	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	80	92.778	Notamacropus_eugenii
ENSMZEG00005011856	snrpb	69	89.286	ENSODEG00000016060	-	76	87.845	Octodon_degus
ENSMZEG00005011856	snrpb	69	94.643	ENSODEG00000004305	-	78	92.818	Octodon_degus
ENSMZEG00005011856	snrpb	100	100.000	ENSONIG00000000248	snrpb	100	100.000	Oreochromis_niloticus
ENSMZEG00005011856	snrpb	69	94.643	ENSOCUG00000014042	-	75	92.818	Oryctolagus_cuniculus
ENSMZEG00005011856	snrpb	73	88.827	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSMZEG00005011856	snrpb	88	64.953	ENSOCUG00000026813	-	77	63.483	Oryctolagus_cuniculus
ENSMZEG00005011856	snrpb	69	92.262	ENSOCUG00000028215	-	75	90.608	Oryctolagus_cuniculus
ENSMZEG00005011856	snrpb	89	87.558	ENSOCUG00000021456	-	75	88.950	Oryctolagus_cuniculus
ENSMZEG00005011856	snrpb	100	99.167	ENSORLG00000021862	snrpb	100	99.167	Oryzias_latipes
ENSMZEG00005011856	snrpb	69	94.643	ENSOGAG00000016149	SNRPB	75	92.818	Otolemur_garnettii
ENSMZEG00005011856	snrpb	69	94.643	ENSOARG00000006740	SNRPB	78	92.818	Ovis_aries
ENSMZEG00005011856	snrpb	69	94.643	ENSPPAG00000036314	SNRPB	78	92.818	Pan_paniscus
ENSMZEG00005011856	snrpb	69	94.643	ENSPPRG00000003233	-	78	92.818	Panthera_pardus
ENSMZEG00005011856	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	78	92.778	Panthera_tigris_altaica
ENSMZEG00005011856	snrpb	69	94.643	ENSPTRG00000013176	SNRPB	78	92.818	Pan_troglodytes
ENSMZEG00005011856	snrpb	69	94.643	ENSPANG00000020362	SNRPB	75	92.818	Papio_anubis
ENSMZEG00005011856	snrpb	99	96.639	ENSPKIG00000002865	snrpb	99	96.639	Paramormyrops_kingsleyae
ENSMZEG00005011856	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	74	93.889	Pelodiscus_sinensis
ENSMZEG00005011856	snrpb	73	97.714	ENSPMGG00000016349	snrpb	74	97.688	Periophthalmus_magnuspinnatus
ENSMZEG00005011856	snrpb	69	94.643	ENSPEMG00000007948	Snrpb	78	92.818	Peromyscus_maniculatus_bairdii
ENSMZEG00005011856	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	75	92.222	Phascolarctos_cinereus
ENSMZEG00005011856	snrpb	62	100.000	ENSPFOG00000011802	snrpb	63	100.000	Poecilia_formosa
ENSMZEG00005011856	snrpb	89	81.364	ENSPLAG00000014130	snrpb	59	100.000	Poecilia_latipinna
ENSMZEG00005011856	snrpb	89	80.841	ENSPREG00000015515	snrpb	62	100.000	Poecilia_reticulata
ENSMZEG00005011856	snrpb	69	94.643	ENSPPYG00000010841	SNRPB	78	92.818	Pongo_abelii
ENSMZEG00005011856	snrpb	69	94.643	ENSPCOG00000013686	SNRPB	78	92.818	Propithecus_coquereli
ENSMZEG00005011856	snrpb	69	93.452	ENSPVAG00000017013	SNRPB	63	91.713	Pteropus_vampyrus
ENSMZEG00005011856	snrpb	100	100.000	ENSPNYG00000014788	snrpb	100	100.000	Pundamilia_nyererei
ENSMZEG00005011856	snrpb	99	97.479	ENSPNAG00000016126	snrpb	99	97.479	Pygocentrus_nattereri
ENSMZEG00005011856	snrpb	69	94.643	ENSRNOG00000006961	Snrpb	73	98.077	Rattus_norvegicus
ENSMZEG00005011856	snrpb	69	94.643	ENSRBIG00000040505	SNRPB	78	93.333	Rhinopithecus_bieti
ENSMZEG00005011856	snrpb	69	94.643	ENSRROG00000036094	SNRPB	78	92.818	Rhinopithecus_roxellana
ENSMZEG00005011856	snrpb	69	94.643	ENSSBOG00000027310	SNRPB	78	92.818	Saimiri_boliviensis_boliviensis
ENSMZEG00005011856	snrpb	69	95.238	ENSSHAG00000010394	SNRPB	75	93.370	Sarcophilus_harrisii
ENSMZEG00005011856	snrpb	99	96.218	ENSSFOG00015002870	snrpb	99	96.218	Scleropages_formosus
ENSMZEG00005011856	snrpb	100	98.750	ENSSMAG00000006766	snrpb	100	98.750	Scophthalmus_maximus
ENSMZEG00005011856	snrpb	100	100.000	ENSSDUG00000018539	snrpb	100	100.000	Seriola_dumerili
ENSMZEG00005011856	snrpb	100	100.000	ENSSLDG00000022391	snrpb	100	100.000	Seriola_lalandi_dorsalis
ENSMZEG00005011856	snrpb	69	79.042	ENSSARG00000003084	SNRPB	77	78.333	Sorex_araneus
ENSMZEG00005011856	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	75	93.889	Sphenodon_punctatus
ENSMZEG00005011856	snrpb	100	100.000	ENSSPAG00000021992	snrpb	100	100.000	Stegastes_partitus
ENSMZEG00005011856	snrpb	69	94.643	ENSSSCG00000040857	-	78	92.818	Sus_scrofa
ENSMZEG00005011856	snrpb	75	72.131	ENSSSCG00000011966	-	76	69.061	Sus_scrofa
ENSMZEG00005011856	snrpb	70	83.529	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSMZEG00005011856	snrpb	95	98.684	ENSTRUG00000023094	snrpb	99	98.684	Takifugu_rubripes
ENSMZEG00005011856	snrpb	100	98.750	ENSTNIG00000002991	snrpb	100	98.750	Tetraodon_nigroviridis
ENSMZEG00005011856	snrpb	69	94.643	ENSUAMG00000005984	-	87	91.713	Ursus_americanus
ENSMZEG00005011856	snrpb	79	76.190	ENSUMAG00000002123	-	63	94.891	Ursus_maritimus
ENSMZEG00005011856	snrpb	69	94.048	ENSVVUG00000025654	-	75	92.265	Vulpes_vulpes
ENSMZEG00005011856	snrpb	96	72.222	ENSVVUG00000010086	-	95	63.229	Vulpes_vulpes
ENSMZEG00005011856	snrpb	63	98.000	ENSXETG00000027266	snrpb	76	92.818	Xenopus_tropicalis
ENSMZEG00005011856	snrpb	89	67.742	ENSXMAG00000028767	snrpb	58	100.000	Xiphophorus_maculatus