EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005011862 (Gene tree)
Gene ID: 101477769
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 16521 bases
Position: chrLG14:28984884-29001404
Accession: 101477769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005015857	Npa1	PF11707.8	3.1e-51	1	2
ENSMZEP00005015857	Npa1	PF11707.8	3.1e-51	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005016368	-	6471	XM_004560581	ENSMZEP00005015857	2156 (aa)	XP_004560638	-

Gene Model

Click here to download ENSMZEG00005011862's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005011862's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005011862	urb1	99	42.161	ENSG00000142207	URB1	99	40.526	Homo_sapiens
ENSMZEG00005011862	urb1	100	74.725	ENSAPOG00000020308	urb1	100	74.862	Acanthochromis_polyacanthus
ENSMZEG00005011862	urb1	99	40.320	ENSAMEG00000011998	URB1	99	40.533	Ailuropoda_melanoleuca
ENSMZEG00005011862	urb1	97	72.587	ENSACIG00000003248	urb1	98	72.587	Amphilophus_citrinellus
ENSMZEG00005011862	urb1	100	65.283	ENSAOCG00000010364	urb1	100	65.328	Amphiprion_ocellaris
ENSMZEG00005011862	urb1	97	72.538	ENSAPEG00000010758	urb1	99	72.618	Amphiprion_percula
ENSMZEG00005011862	urb1	100	67.703	ENSATEG00000011790	urb1	100	67.703	Anabas_testudineus
ENSMZEG00005011862	urb1	97	42.435	ENSAPLG00000012791	URB1	99	42.614	Anas_platyrhynchos
ENSMZEG00005011862	urb1	99	52.604	ENSACAG00000002817	URB1	95	55.556	Anolis_carolinensis
ENSMZEG00005011862	urb1	99	42.015	ENSANAG00000024617	URB1	99	40.789	Aotus_nancymaae
ENSMZEG00005011862	urb1	100	92.763	ENSACLG00000024865	urb1	100	92.763	Astatotilapia_calliptera
ENSMZEG00005011862	urb1	99	55.556	ENSAMXG00000012306	urb1	97	55.556	Astyanax_mexicanus
ENSMZEG00005011862	urb1	99	39.463	ENSBTAG00000012412	URB1	99	39.921	Bos_taurus
ENSMZEG00005011862	urb1	99	41.937	ENSCJAG00000009118	URB1	99	41.804	Callithrix_jacchus
ENSMZEG00005011862	urb1	99	39.200	ENSCAFG00000008892	URB1	99	39.200	Canis_familiaris
ENSMZEG00005011862	urb1	99	39.117	ENSCAFG00020025987	-	99	39.301	Canis_lupus_dingo
ENSMZEG00005011862	urb1	99	38.608	ENSCAFG00020025994	-	99	38.608	Canis_lupus_dingo
ENSMZEG00005011862	urb1	99	39.524	ENSCHIG00000015645	URB1	99	39.712	Capra_hircus
ENSMZEG00005011862	urb1	100	40.130	ENSTSYG00000013286	URB1	99	40.035	Carlito_syrichta
ENSMZEG00005011862	urb1	98	41.474	ENSCAPG00000015589	URB1	99	41.512	Cavia_aperea
ENSMZEG00005011862	urb1	100	40.773	ENSCPOG00000006748	URB1	99	40.808	Cavia_porcellus
ENSMZEG00005011862	urb1	99	41.927	ENSCCAG00000021299	URB1	99	40.991	Cebus_capucinus
ENSMZEG00005011862	urb1	100	40.707	ENSCATG00000042630	URB1	99	40.966	Cercocebus_atys
ENSMZEG00005011862	urb1	100	41.902	ENSCLAG00000005262	URB1	99	42.205	Chinchilla_lanigera
ENSMZEG00005011862	urb1	99	52.980	ENSCSAG00000009584	URB1	96	54.305	Chlorocebus_sabaeus
ENSMZEG00005011862	urb1	99	43.473	ENSCPBG00000006454	URB1	99	43.723	Chrysemys_picta_bellii
ENSMZEG00005011862	urb1	100	40.656	ENSCANG00000031088	URB1	99	40.935	Colobus_angolensis_palliatus
ENSMZEG00005011862	urb1	99	42.029	ENSCGRG00001010616	Urb1	99	41.913	Cricetulus_griseus_chok1gshd
ENSMZEG00005011862	urb1	98	42.103	ENSCGRG00000015840	Urb1	99	42.096	Cricetulus_griseus_crigri
ENSMZEG00005011862	urb1	100	65.700	ENSCSEG00000012616	urb1	99	65.700	Cynoglossus_semilaevis
ENSMZEG00005011862	urb1	93	67.308	ENSCVAG00000009076	urb1	99	67.668	Cyprinodon_variegatus
ENSMZEG00005011862	urb1	99	52.627	ENSDARG00000060308	urb1	99	52.740	Danio_rerio
ENSMZEG00005011862	urb1	85	44.604	ENSDNOG00000015586	URB1	99	44.604	Dasypus_novemcinctus
ENSMZEG00005011862	urb1	99	39.931	ENSDORG00000006735	Urb1	99	40.297	Dipodomys_ordii
ENSMZEG00005011862	urb1	85	54.333	ENSETEG00000009080	URB1	82	54.333	Echinops_telfairi
ENSMZEG00005011862	urb1	98	46.495	ENSEASG00005007711	URB1	98	40.527	Equus_asinus_asinus
ENSMZEG00005011862	urb1	95	49.661	ENSECAG00000013206	URB1	99	49.661	Equus_caballus
ENSMZEG00005011862	urb1	99	55.441	ENSELUG00000020516	urb1	99	55.620	Esox_lucius
ENSMZEG00005011862	urb1	99	39.470	ENSFCAG00000002177	URB1	99	39.614	Felis_catus
ENSMZEG00005011862	urb1	97	40.391	ENSFALG00000004636	URB1	98	40.442	Ficedula_albicollis
ENSMZEG00005011862	urb1	99	42.142	ENSFDAG00000007288	URB1	95	40.907	Fukomys_damarensis
ENSMZEG00005011862	urb1	100	65.059	ENSFHEG00000000202	urb1	99	67.491	Fundulus_heteroclitus
ENSMZEG00005011862	urb1	93	52.306	ENSGMOG00000001838	urb1	94	52.306	Gadus_morhua
ENSMZEG00005011862	urb1	99	44.040	ENSGALG00000015887	URB1	99	44.128	Gallus_gallus
ENSMZEG00005011862	urb1	99	62.422	ENSGAFG00000020694	urb1	99	64.597	Gambusia_affinis
ENSMZEG00005011862	urb1	99	70.887	ENSGACG00000011703	urb1	99	70.788	Gasterosteus_aculeatus
ENSMZEG00005011862	urb1	99	43.221	ENSGAGG00000022544	URB1	99	43.425	Gopherus_agassizii
ENSMZEG00005011862	urb1	99	41.989	ENSGGOG00000000285	URB1	99	40.439	Gorilla_gorilla
ENSMZEG00005011862	urb1	100	92.365	ENSHBUG00000001904	urb1	100	92.365	Haplochromis_burtoni
ENSMZEG00005011862	urb1	99	39.307	ENSHGLG00000004907	URB1	99	39.298	Heterocephalus_glaber_female
ENSMZEG00005011862	urb1	99	39.360	ENSHGLG00100010749	URB1	99	39.351	Heterocephalus_glaber_male
ENSMZEG00005011862	urb1	73	67.658	ENSHCOG00000018683	urb1	99	68.208	Hippocampus_comes
ENSMZEG00005011862	urb1	99	61.413	ENSIPUG00000014721	urb1	97	61.413	Ictalurus_punctatus
ENSMZEG00005011862	urb1	99	41.758	ENSSTOG00000004539	URB1	99	40.026	Ictidomys_tridecemlineatus
ENSMZEG00005011862	urb1	90	74.435	ENSKMAG00000006001	urb1	99	70.690	Kryptolebias_marmoratus
ENSMZEG00005011862	urb1	95	66.529	ENSLBEG00000027208	urb1	99	66.529	Labrus_bergylta
ENSMZEG00005011862	urb1	97	60.690	ENSLACG00000017059	URB1	93	60.690	Latimeria_chalumnae
ENSMZEG00005011862	urb1	99	64.324	ENSLOCG00000009190	urb1	96	64.324	Lepisosteus_oculatus
ENSMZEG00005011862	urb1	99	41.781	ENSLAFG00000010407	URB1	98	41.622	Loxodonta_africana
ENSMZEG00005011862	urb1	100	40.725	ENSMFAG00000034391	URB1	97	40.984	Macaca_fascicularis
ENSMZEG00005011862	urb1	100	40.638	ENSMMUG00000010295	URB1	99	40.897	Macaca_mulatta
ENSMZEG00005011862	urb1	100	39.948	ENSMNEG00000032981	URB1	99	40.182	Macaca_nemestrina
ENSMZEG00005011862	urb1	100	40.854	ENSMLEG00000041435	URB1	99	41.367	Mandrillus_leucophaeus
ENSMZEG00005011862	urb1	99	65.738	ENSMAMG00000011238	urb1	99	65.650	Mastacembelus_armatus
ENSMZEG00005011862	urb1	98	43.142	ENSMGAG00000014512	URB1	99	43.482	Meleagris_gallopavo
ENSMZEG00005011862	urb1	92	50.711	ENSMAUG00000010516	Urb1	99	50.000	Mesocricetus_auratus
ENSMZEG00005011862	urb1	99	40.078	ENSMICG00000016424	URB1	99	40.228	Microcebus_murinus
ENSMZEG00005011862	urb1	99	41.202	ENSMOCG00000012613	Urb1	98	41.637	Microtus_ochrogaster
ENSMZEG00005011862	urb1	99	40.113	ENSMODG00000021076	URB1	99	40.377	Monodelphis_domestica
ENSMZEG00005011862	urb1	98	68.471	ENSMALG00000017411	urb1	99	68.471	Monopterus_albus
ENSMZEG00005011862	urb1	99	41.378	MGP_CAROLIEiJ_G0020948	Urb1	99	41.378	Mus_caroli
ENSMZEG00005011862	urb1	99	41.388	ENSMUSG00000039929	Urb1	99	41.388	Mus_musculus
ENSMZEG00005011862	urb1	99	41.158	MGP_PahariEiJ_G0016653	Urb1	99	41.158	Mus_pahari
ENSMZEG00005011862	urb1	99	41.233	MGP_SPRETEiJ_G0021854	Urb1	99	41.233	Mus_spretus
ENSMZEG00005011862	urb1	99	40.209	ENSMPUG00000001123	URB1	99	40.405	Mustela_putorius_furo
ENSMZEG00005011862	urb1	99	39.510	ENSNGAG00000001905	Urb1	98	41.504	Nannospalax_galili
ENSMZEG00005011862	urb1	83	83.369	ENSNBRG00000001049	urb1	99	83.369	Neolamprologus_brichardi
ENSMZEG00005011862	urb1	99	40.628	ENSNLEG00000026872	URB1	99	39.011	Nomascus_leucogenys
ENSMZEG00005011862	urb1	90	55.114	ENSMEUG00000010828	URB1	96	36.266	Notamacropus_eugenii
ENSMZEG00005011862	urb1	99	40.148	ENSOPRG00000013482	URB1	99	40.441	Ochotona_princeps
ENSMZEG00005011862	urb1	99	39.340	ENSODEG00000002587	URB1	98	39.560	Octodon_degus
ENSMZEG00005011862	urb1	100	89.634	ENSONIG00000005599	urb1	100	89.634	Oreochromis_niloticus
ENSMZEG00005011862	urb1	99	40.866	ENSOCUG00000009381	URB1	99	41.153	Oryctolagus_cuniculus
ENSMZEG00005011862	urb1	99	64.584	ENSORLG00000003429	urb1	99	64.584	Oryzias_latipes
ENSMZEG00005011862	urb1	99	64.279	ENSORLG00020013785	urb1	99	64.279	Oryzias_latipes_hni
ENSMZEG00005011862	urb1	99	65.111	ENSORLG00015019421	urb1	99	65.111	Oryzias_latipes_hsok
ENSMZEG00005011862	urb1	77	63.075	ENSOMEG00000002094	urb1	98	63.075	Oryzias_melastigma
ENSMZEG00005011862	urb1	100	40.346	ENSOGAG00000017140	URB1	99	40.639	Otolemur_garnettii
ENSMZEG00005011862	urb1	95	43.680	ENSOARG00000013679	URB1	99	41.744	Ovis_aries
ENSMZEG00005011862	urb1	99	41.872	ENSPPAG00000003423	URB1	99	40.937	Pan_paniscus
ENSMZEG00005011862	urb1	99	39.532	ENSPPRG00000023131	URB1	99	39.728	Panthera_pardus
ENSMZEG00005011862	urb1	87	42.578	ENSPTIG00000016125	URB1	93	42.578	Panthera_tigris_altaica
ENSMZEG00005011862	urb1	99	41.828	ENSPTRG00000013852	URB1	99	40.324	Pan_troglodytes
ENSMZEG00005011862	urb1	100	40.854	ENSPANG00000021964	URB1	99	41.133	Papio_anubis
ENSMZEG00005011862	urb1	99	48.910	ENSPKIG00000003683	urb1	98	49.538	Paramormyrops_kingsleyae
ENSMZEG00005011862	urb1	99	53.409	ENSPEMG00000021205	Urb1	95	53.409	Peromyscus_maniculatus_bairdii
ENSMZEG00005011862	urb1	80	31.709	ENSPMAG00000009733	URB1	96	32.243	Petromyzon_marinus
ENSMZEG00005011862	urb1	99	40.312	ENSPCIG00000016350	URB1	99	40.713	Phascolarctos_cinereus
ENSMZEG00005011862	urb1	97	65.682	ENSPLAG00000004371	urb1	100	65.682	Poecilia_latipinna
ENSMZEG00005011862	urb1	100	66.344	ENSPMEG00000006634	urb1	100	66.344	Poecilia_mexicana
ENSMZEG00005011862	urb1	100	65.698	ENSPREG00000013453	urb1	100	65.698	Poecilia_reticulata
ENSMZEG00005011862	urb1	99	39.756	ENSPPYG00000011359	URB1	99	39.921	Pongo_abelii
ENSMZEG00005011862	urb1	99	36.941	ENSPCAG00000007430	URB1	99	36.985	Procavia_capensis
ENSMZEG00005011862	urb1	99	41.895	ENSPCOG00000022695	URB1	99	42.249	Propithecus_coquereli
ENSMZEG00005011862	urb1	99	39.764	ENSPVAG00000000889	URB1	98	39.965	Pteropus_vampyrus
ENSMZEG00005011862	urb1	100	88.819	ENSPNYG00000010589	urb1	100	88.819	Pundamilia_nyererei
ENSMZEG00005011862	urb1	99	62.162	ENSPNAG00000019324	urb1	96	62.162	Pygocentrus_nattereri
ENSMZEG00005011862	urb1	99	40.875	ENSRNOG00000002080	Urb1	99	40.919	Rattus_norvegicus
ENSMZEG00005011862	urb1	100	40.725	ENSRBIG00000033122	URB1	99	40.874	Rhinopithecus_bieti
ENSMZEG00005011862	urb1	100	40.699	ENSRROG00000040237	URB1	99	40.848	Rhinopithecus_roxellana
ENSMZEG00005011862	urb1	99	41.733	ENSSBOG00000027672	URB1	99	40.744	Saimiri_boliviensis_boliviensis
ENSMZEG00005011862	urb1	99	40.546	ENSSHAG00000005140	URB1	99	40.772	Sarcophilus_harrisii
ENSMZEG00005011862	urb1	92	53.025	ENSSFOG00015000339	urb1	99	53.472	Scleropages_formosus
ENSMZEG00005011862	urb1	100	67.921	ENSSMAG00000003782	urb1	100	68.228	Scophthalmus_maximus
ENSMZEG00005011862	urb1	100	71.278	ENSSDUG00000012313	urb1	99	71.278	Seriola_dumerili
ENSMZEG00005011862	urb1	100	70.971	ENSSLDG00000023179	urb1	99	70.971	Seriola_lalandi_dorsalis
ENSMZEG00005011862	urb1	99	41.483	ENSSPUG00000012447	URB1	99	41.667	Sphenodon_punctatus
ENSMZEG00005011862	urb1	99	78.098	ENSSPAG00000006325	urb1	99	78.235	Stegastes_partitus
ENSMZEG00005011862	urb1	99	41.086	ENSSSCG00000032024	URB1	98	41.425	Sus_scrofa
ENSMZEG00005011862	urb1	73	44.754	ENSTGUG00000013442	URB1	100	44.754	Taeniopygia_guttata
ENSMZEG00005011862	urb1	100	62.412	ENSTRUG00000009372	urb1	100	62.236	Takifugu_rubripes
ENSMZEG00005011862	urb1	99	60.895	ENSTNIG00000016277	urb1	99	60.700	Tetraodon_nigroviridis
ENSMZEG00005011862	urb1	77	48.851	ENSTBEG00000010044	URB1	78	48.851	Tupaia_belangeri
ENSMZEG00005011862	urb1	88	67.708	ENSTTRG00000007712	URB1	86	67.708	Tursiops_truncatus
ENSMZEG00005011862	urb1	99	39.791	ENSUAMG00000012231	URB1	99	39.982	Ursus_americanus
ENSMZEG00005011862	urb1	88	49.880	ENSUMAG00000017419	URB1	94	42.555	Ursus_maritimus
ENSMZEG00005011862	urb1	67	60.800	ENSVPAG00000001164	URB1	65	60.800	Vicugna_pacos
ENSMZEG00005011862	urb1	99	41.901	ENSVVUG00000000551	URB1	99	42.115	Vulpes_vulpes
ENSMZEG00005011862	urb1	99	42.527	ENSXETG00000009895	urb1	98	42.527	Xenopus_tropicalis
ENSMZEG00005011862	urb1	100	66.038	ENSXCOG00000005500	urb1	100	65.992	Xiphophorus_couchianus
ENSMZEG00005011862	urb1	100	66.421	ENSXMAG00000007253	urb1	100	66.375	Xiphophorus_maculatus