EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005012722 (Gene tree)
Gene ID: 101465823
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 6599 bases
Position: chrLG6:1556900-1563498
Accession: 101465823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005016941	PPR	PF01535.20	1.5e-19	1	2
ENSMZEP00005016941	PPR	PF01535.20	1.5e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005017481	-	2927	XM_004568304	ENSMZEP00005016941	708 (aa)	XP_004568361	UPI000329CD17

Gene Model

Click here to download ENSMZEG00005012722's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005012722's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005012722	ptcd1	83	47.078	ENSG00000106246	PTCD1	87	47.164	Homo_sapiens
ENSMZEG00005012722	ptcd1	83	47.078	ENSG00000248919	ATP5MF-PTCD1	81	47.164	Homo_sapiens
ENSMZEG00005012722	ptcd1	88	68.239	ENSAPOG00000010679	ptcd1	96	68.239	Acanthochromis_polyacanthus
ENSMZEG00005012722	ptcd1	83	49.918	ENSAMEG00000006224	-	80	49.918	Ailuropoda_melanoleuca
ENSMZEG00005012722	ptcd1	93	83.358	ENSACIG00000017861	ptcd1	97	83.358	Amphilophus_citrinellus
ENSMZEG00005012722	ptcd1	99	67.792	ENSAOCG00000020741	-	99	67.792	Amphiprion_ocellaris
ENSMZEG00005012722	ptcd1	88	69.182	ENSAOCG00000022617	ptcd1	94	69.182	Amphiprion_ocellaris
ENSMZEG00005012722	ptcd1	99	67.932	ENSAPEG00000022632	ptcd1	99	67.932	Amphiprion_percula
ENSMZEG00005012722	ptcd1	100	70.210	ENSATEG00000007016	ptcd1	100	70.210	Anabas_testudineus
ENSMZEG00005012722	ptcd1	80	49.745	ENSAPLG00000006862	-	91	49.831	Anas_platyrhynchos
ENSMZEG00005012722	ptcd1	81	50.083	ENSACAG00000012871	-	78	50.083	Anolis_carolinensis
ENSMZEG00005012722	ptcd1	80	47.987	ENSANAG00000035790	-	86	48.074	Aotus_nancymaae
ENSMZEG00005012722	ptcd1	100	99.435	ENSACLG00000002824	ptcd1	100	99.435	Astatotilapia_calliptera
ENSMZEG00005012722	ptcd1	82	51.351	ENSAMXG00000037292	ptcd1	87	51.510	Astyanax_mexicanus
ENSMZEG00005012722	ptcd1	84	47.735	ENSBTAG00000020440	-	75	47.896	Bos_taurus
ENSMZEG00005012722	ptcd1	80	48.900	ENSCJAG00000015815	-	84	48.986	Callithrix_jacchus
ENSMZEG00005012722	ptcd1	83	48.136	ENSCAFG00000015055	-	80	48.136	Canis_familiaris
ENSMZEG00005012722	ptcd1	83	48.058	ENSCAFG00020014480	-	80	48.058	Canis_lupus_dingo
ENSMZEG00005012722	ptcd1	86	48.480	ENSCHIG00000027000	-	87	48.480	Capra_hircus
ENSMZEG00005012722	ptcd1	80	48.087	ENSTSYG00000029495	-	83	48.173	Carlito_syrichta
ENSMZEG00005012722	ptcd1	80	48.567	ENSCAPG00000014660	-	92	47.727	Cavia_aperea
ENSMZEG00005012722	ptcd1	80	49.241	ENSCPOG00000001780	-	86	48.377	Cavia_porcellus
ENSMZEG00005012722	ptcd1	80	48.904	ENSCCAG00000034025	-	84	48.990	Cebus_capucinus
ENSMZEG00005012722	ptcd1	80	48.311	ENSCATG00000040859	-	83	48.398	Cercocebus_atys
ENSMZEG00005012722	ptcd1	84	47.458	ENSCLAG00000006354	-	88	47.567	Chinchilla_lanigera
ENSMZEG00005012722	ptcd1	76	48.393	ENSCSAG00000017794	-	82	48.485	Chlorocebus_sabaeus
ENSMZEG00005012722	ptcd1	82	47.368	ENSCPBG00000020866	-	84	47.528	Chrysemys_picta_bellii
ENSMZEG00005012722	ptcd1	82	47.627	ENSCANG00000023441	-	86	48.445	Colobus_angolensis_palliatus
ENSMZEG00005012722	ptcd1	82	49.010	ENSCGRG00001023686	Ptcd1	85	49.505	Cricetulus_griseus_chok1gshd
ENSMZEG00005012722	ptcd1	82	49.010	ENSCGRG00000015031	Ptcd1	85	49.505	Cricetulus_griseus_crigri
ENSMZEG00005012722	ptcd1	98	57.682	ENSCSEG00000002378	ptcd1	99	57.997	Cynoglossus_semilaevis
ENSMZEG00005012722	ptcd1	93	69.044	ENSCVAG00000003621	ptcd1	98	69.254	Cyprinodon_variegatus
ENSMZEG00005012722	ptcd1	99	69.187	ENSCVAG00000015826	ptcd1	98	69.187	Cyprinodon_variegatus
ENSMZEG00005012722	ptcd1	84	52.033	ENSDARG00000076176	ptcd1	88	52.033	Danio_rerio
ENSMZEG00005012722	ptcd1	81	48.322	ENSDNOG00000009957	-	85	48.046	Dasypus_novemcinctus
ENSMZEG00005012722	ptcd1	80	49.239	ENSDORG00000000740	Ptcd1	86	49.000	Dipodomys_ordii
ENSMZEG00005012722	ptcd1	80	40.317	ENSEBUG00000014515	ptcd1	94	40.143	Eptatretus_burgeri
ENSMZEG00005012722	ptcd1	80	50.756	ENSEASG00005002480	-	83	51.174	Equus_asinus_asinus
ENSMZEG00005012722	ptcd1	80	49.500	ENSECAG00000016617	-	88	46.288	Equus_caballus
ENSMZEG00005012722	ptcd1	92	54.545	ENSELUG00000016517	ptcd1	94	54.545	Esox_lucius
ENSMZEG00005012722	ptcd1	80	48.653	ENSFCAG00000015069	-	83	48.653	Felis_catus
ENSMZEG00005012722	ptcd1	80	47.579	ENSFALG00000013803	-	82	47.746	Ficedula_albicollis
ENSMZEG00005012722	ptcd1	80	48.590	ENSFDAG00000006393	-	85	48.684	Fukomys_damarensis
ENSMZEG00005012722	ptcd1	78	73.968	ENSFHEG00000012491	ptcd1	97	73.968	Fundulus_heteroclitus
ENSMZEG00005012722	ptcd1	87	62.839	ENSGMOG00000007639	ptcd1	99	62.839	Gadus_morhua
ENSMZEG00005012722	ptcd1	80	47.517	ENSGALG00000004711	-	83	47.848	Gallus_gallus
ENSMZEG00005012722	ptcd1	88	69.716	ENSGAFG00000013175	ptcd1	90	70.382	Gambusia_affinis
ENSMZEG00005012722	ptcd1	89	70.625	ENSGACG00000016607	ptcd1	99	70.625	Gasterosteus_aculeatus
ENSMZEG00005012722	ptcd1	77	47.359	ENSGAGG00000021832	-	85	47.109	Gopherus_agassizii
ENSMZEG00005012722	ptcd1	83	46.916	ENSGGOG00000015123	-	87	47.002	Gorilla_gorilla
ENSMZEG00005012722	ptcd1	100	97.881	ENSHBUG00000018275	ptcd1	100	97.881	Haplochromis_burtoni
ENSMZEG00005012722	ptcd1	82	48.361	ENSHGLG00000017621	-	88	47.059	Heterocephalus_glaber_female
ENSMZEG00005012722	ptcd1	82	48.361	ENSHGLG00100007218	-	88	47.059	Heterocephalus_glaber_male
ENSMZEG00005012722	ptcd1	98	57.676	ENSHCOG00000010784	ptcd1	98	58.250	Hippocampus_comes
ENSMZEG00005012722	ptcd1	84	49.029	ENSSTOG00000001682	-	86	49.029	Ictidomys_tridecemlineatus
ENSMZEG00005012722	ptcd1	83	48.940	ENSJJAG00000000319	Ptcd1	87	48.940	Jaculus_jaculus
ENSMZEG00005012722	ptcd1	98	67.719	ENSKMAG00000008708	ptcd1	98	67.719	Kryptolebias_marmoratus
ENSMZEG00005012722	ptcd1	99	66.667	ENSLBEG00000008061	ptcd1	99	67.080	Labrus_bergylta
ENSMZEG00005012722	ptcd1	80	49.410	ENSLACG00000011172	ptcd1	82	49.410	Latimeria_chalumnae
ENSMZEG00005012722	ptcd1	83	52.070	ENSLOCG00000004833	ptcd1	94	51.575	Lepisosteus_oculatus
ENSMZEG00005012722	ptcd1	83	48.052	ENSLAFG00000002588	-	86	48.052	Loxodonta_africana
ENSMZEG00005012722	ptcd1	80	48.311	ENSMFAG00000041324	-	83	48.398	Macaca_fascicularis
ENSMZEG00005012722	ptcd1	80	48.311	ENSMMUG00000030408	-	83	48.398	Macaca_mulatta
ENSMZEG00005012722	ptcd1	80	48.480	ENSMNEG00000043786	-	83	48.567	Macaca_nemestrina
ENSMZEG00005012722	ptcd1	80	35.788	ENSMLEG00000031179	-	81	37.607	Mandrillus_leucophaeus
ENSMZEG00005012722	ptcd1	99	68.156	ENSMAMG00000007623	ptcd1	98	68.156	Mastacembelus_armatus
ENSMZEG00005012722	ptcd1	83	47.114	ENSMGAG00000004211	-	82	47.205	Meleagris_gallopavo
ENSMZEG00005012722	ptcd1	83	46.341	ENSMICG00000017428	-	87	46.677	Microcebus_murinus
ENSMZEG00005012722	ptcd1	99	68.828	ENSMMOG00000020243	ptcd1	99	68.828	Mola_mola
ENSMZEG00005012722	ptcd1	84	45.912	ENSMODG00000001350	-	85	45.912	Monodelphis_domestica
ENSMZEG00005012722	ptcd1	99	70.735	ENSMALG00000018442	ptcd1	99	70.539	Monopterus_albus
ENSMZEG00005012722	ptcd1	85	47.428	MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	Mus_caroli
ENSMZEG00005012722	ptcd1	85	48.718	ENSMUSG00000029624	Ptcd1	89	48.718	Mus_musculus
ENSMZEG00005012722	ptcd1	84	47.658	MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	Mus_pahari
ENSMZEG00005012722	ptcd1	85	47.436	MGP_SPRETEiJ_G0029012	Ptcd1	89	48.397	Mus_spretus
ENSMZEG00005012722	ptcd1	85	47.520	ENSMPUG00000016518	-	88	48.000	Mustela_putorius_furo
ENSMZEG00005012722	ptcd1	80	50.251	ENSMLUG00000010994	-	83	47.713	Myotis_lucifugus
ENSMZEG00005012722	ptcd1	98	93.123	ENSNBRG00000010079	ptcd1	96	96.218	Neolamprologus_brichardi
ENSMZEG00005012722	ptcd1	70	47.610	ENSNLEG00000011060	-	87	47.610	Nomascus_leucogenys
ENSMZEG00005012722	ptcd1	80	47.324	ENSMEUG00000006930	-	84	47.324	Notamacropus_eugenii
ENSMZEG00005012722	ptcd1	70	59.483	ENSOPRG00000013647	-	73	62.069	Ochotona_princeps
ENSMZEG00005012722	ptcd1	85	91.987	ENSONIG00000003168	ptcd1	100	91.987	Oreochromis_niloticus
ENSMZEG00005012722	ptcd1	76	47.350	ENSOANG00000007728	-	73	47.350	Ornithorhynchus_anatinus
ENSMZEG00005012722	ptcd1	85	48.160	ENSOCUG00000010584	-	86	48.166	Oryctolagus_cuniculus
ENSMZEG00005012722	ptcd1	96	67.007	ENSORLG00000009275	ptcd1	99	67.007	Oryzias_latipes
ENSMZEG00005012722	ptcd1	96	68.228	ENSORLG00020000988	ptcd1	99	68.228	Oryzias_latipes_hni
ENSMZEG00005012722	ptcd1	96	68.175	ENSORLG00015010557	ptcd1	99	68.175	Oryzias_latipes_hsok
ENSMZEG00005012722	ptcd1	96	68.135	ENSOMEG00000020627	ptcd1	99	68.135	Oryzias_melastigma
ENSMZEG00005012722	ptcd1	87	45.597	ENSOGAG00000010877	-	89	45.912	Otolemur_garnettii
ENSMZEG00005012722	ptcd1	86	45.234	ENSOARG00000018676	-	88	45.234	Ovis_aries
ENSMZEG00005012722	ptcd1	83	46.591	ENSPPAG00000036024	-	87	46.677	Pan_paniscus
ENSMZEG00005012722	ptcd1	80	49.327	ENSPPRG00000003478	-	84	49.327	Panthera_pardus
ENSMZEG00005012722	ptcd1	83	46.916	ENSPTRG00000019452	-	87	47.002	Pan_troglodytes
ENSMZEG00005012722	ptcd1	80	48.480	ENSPANG00000016730	-	83	48.567	Papio_anubis
ENSMZEG00005012722	ptcd1	80	51.877	ENSPKIG00000014215	ptcd1	84	52.324	Paramormyrops_kingsleyae
ENSMZEG00005012722	ptcd1	80	48.123	ENSPSIG00000011184	-	98	48.294	Pelodiscus_sinensis
ENSMZEG00005012722	ptcd1	70	42.775	ENSPMAG00000009667	ptcd1	100	42.775	Petromyzon_marinus
ENSMZEG00005012722	ptcd1	84	46.530	ENSPCIG00000024778	-	85	46.530	Phascolarctos_cinereus
ENSMZEG00005012722	ptcd1	99	65.363	ENSPFOG00000004458	ptcd1	99	65.363	Poecilia_formosa
ENSMZEG00005012722	ptcd1	99	65.638	ENSPLAG00000011051	ptcd1	99	65.778	Poecilia_latipinna
ENSMZEG00005012722	ptcd1	99	65.690	ENSPMEG00000020547	ptcd1	99	65.690	Poecilia_mexicana
ENSMZEG00005012722	ptcd1	89	69.291	ENSPREG00000000059	ptcd1	90	69.764	Poecilia_reticulata
ENSMZEG00005012722	ptcd1	80	47.899	ENSPPYG00000017377	-	88	47.899	Pongo_abelii
ENSMZEG00005012722	ptcd1	75	52.667	ENSPCAG00000001852	-	83	52.667	Procavia_capensis
ENSMZEG00005012722	ptcd1	82	48.093	ENSPCOG00000018596	-	90	47.132	Propithecus_coquereli
ENSMZEG00005012722	ptcd1	51	59.091	ENSPVAG00000007529	-	55	59.091	Pteropus_vampyrus
ENSMZEG00005012722	ptcd1	100	97.599	ENSPNYG00000019993	ptcd1	100	97.599	Pundamilia_nyererei
ENSMZEG00005012722	ptcd1	81	53.936	ENSPNAG00000014931	ptcd1	89	52.640	Pygocentrus_nattereri
ENSMZEG00005012722	ptcd1	87	47.003	ENSRNOG00000000987	Ptcd1	92	47.319	Rattus_norvegicus
ENSMZEG00005012722	ptcd1	80	48.567	ENSRBIG00000043393	-	83	49.410	Rhinopithecus_bieti
ENSMZEG00005012722	ptcd1	80	49.236	ENSRROG00000036420	-	83	50.085	Rhinopithecus_roxellana
ENSMZEG00005012722	ptcd1	80	48.480	ENSSBOG00000024114	-	84	48.567	Saimiri_boliviensis_boliviensis
ENSMZEG00005012722	ptcd1	84	46.400	ENSSHAG00000011376	-	93	46.400	Sarcophilus_harrisii
ENSMZEG00005012722	ptcd1	84	53.120	ENSSFOG00015007909	ptcd1	83	53.440	Scleropages_formosus
ENSMZEG00005012722	ptcd1	87	68.421	ENSSMAG00000000218	ptcd1	99	68.421	Scophthalmus_maximus
ENSMZEG00005012722	ptcd1	96	71.861	ENSSDUG00000015671	ptcd1	100	71.861	Seriola_dumerili
ENSMZEG00005012722	ptcd1	93	72.904	ENSSLDG00000014261	ptcd1	99	70.528	Seriola_lalandi_dorsalis
ENSMZEG00005012722	ptcd1	84	46.782	ENSSPUG00000003540	-	85	46.782	Sphenodon_punctatus
ENSMZEG00005012722	ptcd1	100	71.961	ENSSPAG00000011049	ptcd1	100	71.961	Stegastes_partitus
ENSMZEG00005012722	ptcd1	86	47.218	ENSSSCG00000007622	-	88	49.492	Sus_scrofa
ENSMZEG00005012722	ptcd1	80	47.619	ENSTGUG00000007563	-	95	48.136	Taeniopygia_guttata
ENSMZEG00005012722	ptcd1	99	65.187	ENSTRUG00000013471	ptcd1	99	65.187	Takifugu_rubripes
ENSMZEG00005012722	ptcd1	95	64.110	ENSTNIG00000008271	ptcd1	99	64.110	Tetraodon_nigroviridis
ENSMZEG00005012722	ptcd1	80	48.409	ENSTBEG00000011021	-	84	48.409	Tupaia_belangeri
ENSMZEG00005012722	ptcd1	80	48.464	ENSTTRG00000003006	-	83	48.464	Tursiops_truncatus
ENSMZEG00005012722	ptcd1	83	49.013	ENSUAMG00000008049	-	86	48.849	Ursus_americanus
ENSMZEG00005012722	ptcd1	83	49.103	ENSVVUG00000008836	-	86	49.103	Vulpes_vulpes
ENSMZEG00005012722	ptcd1	80	45.960	ENSXETG00000009891	ptcd1	84	45.960	Xenopus_tropicalis
ENSMZEG00005012722	ptcd1	89	69.844	ENSXMAG00000015540	ptcd1	90	70.000	Xiphophorus_maculatus