EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005012742 (Gene tree)
Gene ID: 101483110
Gene Symbol: RNPS1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 6047 bases
Position: chrLG4:17115089-17121135
Accession: 101483110
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005016966	RRM_1	PF00076.22	1.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005017507	RNPS1-201	2233	XM_004559392	ENSMZEP00005016966	278 (aa)	XP_004559449	UPI000329B492

Gene Model

Click here to download ENSMZEG00005012742's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005012742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005012742	RNPS1	82	67.100	ENSAPOG00000014649	-	83	71.861	Acanthochromis_polyacanthus
ENSMZEG00005012742	RNPS1	82	89.083	ENSAPOG00000017310	RNPS1	74	89.035	Acanthochromis_polyacanthus
ENSMZEG00005012742	RNPS1	77	89.202	ENSACIG00000014367	-	77	79.343	Amphilophus_citrinellus
ENSMZEG00005012742	RNPS1	82	78.355	ENSAOCG00000002404	RNPS1	83	84.848	Amphiprion_ocellaris
ENSMZEG00005012742	RNPS1	82	78.261	ENSAPEG00000006497	RNPS1	80	84.783	Amphiprion_percula
ENSMZEG00005012742	RNPS1	82	81.385	ENSATEG00000024267	RNPS1	83	83.117	Anabas_testudineus
ENSMZEG00005012742	RNPS1	77	63.551	ENSATEG00000000835	RNPS1	89	68.720	Anabas_testudineus
ENSMZEG00005012742	RNPS1	100	100.000	ENSACLG00000025942	RNPS1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005012742	RNPS1	82	63.755	ENSACLG00000021537	-	86	66.522	Astatotilapia_calliptera
ENSMZEG00005012742	RNPS1	82	77.155	ENSAMXG00000006330	-	82	70.259	Astyanax_mexicanus
ENSMZEG00005012742	RNPS1	93	62.879	ENSCATG00000042361	-	80	63.180	Cercocebus_atys
ENSMZEG00005012742	RNPS1	97	71.377	ENSCSAG00000005219	-	81	66.250	Chlorocebus_sabaeus
ENSMZEG00005012742	RNPS1	82	73.478	ENSCSEG00000015997	RNPS1	80	76.087	Cynoglossus_semilaevis
ENSMZEG00005012742	RNPS1	82	70.000	ENSCSEG00000000402	RNPS1	76	70.996	Cynoglossus_semilaevis
ENSMZEG00005012742	RNPS1	77	77.674	ENSCVAG00000010868	RNPS1	77	78.605	Cyprinodon_variegatus
ENSMZEG00005012742	RNPS1	82	70.940	ENSDARG00000100188	RNPS1	83	73.504	Danio_rerio
ENSMZEG00005012742	RNPS1	82	70.940	ENSDARG00000116743	rnps1	83	73.504	Danio_rerio
ENSMZEG00005012742	RNPS1	69	51.269	ENSDNOG00000038751	-	99	51.256	Dasypus_novemcinctus
ENSMZEG00005012742	RNPS1	75	73.684	ENSELUG00000015003	RNPS1	77	71.963	Esox_lucius
ENSMZEG00005012742	RNPS1	77	79.630	ENSFHEG00000011705	RNPS1	77	81.019	Fundulus_heteroclitus
ENSMZEG00005012742	RNPS1	77	77.209	ENSGAFG00000005457	RNPS1	77	80.000	Gambusia_affinis
ENSMZEG00005012742	RNPS1	82	66.667	ENSGACG00000005641	-	82	67.532	Gasterosteus_aculeatus
ENSMZEG00005012742	RNPS1	82	75.431	ENSGACG00000011261	RNPS1	83	78.017	Gasterosteus_aculeatus
ENSMZEG00005012742	RNPS1	82	63.755	ENSHBUG00000017337	-	82	66.522	Haplochromis_burtoni
ENSMZEG00005012742	RNPS1	100	99.640	ENSHBUG00000002494	RNPS1	100	99.640	Haplochromis_burtoni
ENSMZEG00005012742	RNPS1	91	67.050	ENSHGLG00100015267	-	86	63.333	Heterocephalus_glaber_male
ENSMZEG00005012742	RNPS1	84	67.797	ENSJJAG00000019234	-	68	67.797	Jaculus_jaculus
ENSMZEG00005012742	RNPS1	82	77.826	ENSKMAG00000009135	RNPS1	82	83.478	Kryptolebias_marmoratus
ENSMZEG00005012742	RNPS1	75	73.684	ENSLBEG00000024091	RNPS1	77	74.178	Labrus_bergylta
ENSMZEG00005012742	RNPS1	84	65.000	ENSMFAG00000044121	-	83	62.500	Macaca_fascicularis
ENSMZEG00005012742	RNPS1	86	67.347	ENSMMUG00000041726	-	84	64.435	Macaca_mulatta
ENSMZEG00005012742	RNPS1	86	66.939	ENSMNEG00000024827	-	84	64.017	Macaca_nemestrina
ENSMZEG00005012742	RNPS1	75	64.186	ENSMLEG00000040232	-	83	60.748	Mandrillus_leucophaeus
ENSMZEG00005012742	RNPS1	82	77.391	ENSMAMG00000021148	-	81	71.304	Mastacembelus_armatus
ENSMZEG00005012742	RNPS1	82	80.952	ENSMAMG00000021609	-	83	82.684	Mastacembelus_armatus
ENSMZEG00005012742	RNPS1	82	63.913	ENSMZEG00005006256	-	83	66.667	Maylandia_zebra
ENSMZEG00005012742	RNPS1	76	73.460	ENSMMOG00000010863	RNPS1	77	73.709	Mola_mola
ENSMZEG00005012742	RNPS1	99	97.834	ENSNBRG00000023437	RNPS1	100	97.834	Neolamprologus_brichardi
ENSMZEG00005012742	RNPS1	82	63.913	ENSNBRG00000014540	-	85	66.667	Neolamprologus_brichardi
ENSMZEG00005012742	RNPS1	60	52.695	ENSODEG00000002513	-	52	47.899	Octodon_degus
ENSMZEG00005012742	RNPS1	82	62.009	ENSONIG00000019627	-	83	66.667	Oreochromis_niloticus
ENSMZEG00005012742	RNPS1	82	75.546	ENSORLG00000008033	RNPS1	94	76.961	Oryzias_latipes
ENSMZEG00005012742	RNPS1	82	75.439	ENSORLG00020020207	RNPS1	82	73.684	Oryzias_latipes_hni
ENSMZEG00005012742	RNPS1	82	75.877	ENSORLG00015000305	-	82	74.123	Oryzias_latipes_hsok
ENSMZEG00005012742	RNPS1	59	63.804	ENSPTIG00000015643	RNPS1	62	77.119	Panthera_tigris_altaica
ENSMZEG00005012742	RNPS1	73	49.275	ENSPANG00000033576	-	77	46.602	Papio_anubis
ENSMZEG00005012742	RNPS1	82	71.915	ENSPKIG00000023465	RNPS1	83	67.234	Paramormyrops_kingsleyae
ENSMZEG00005012742	RNPS1	59	65.031	ENSPCIG00000016114	-	58	75.424	Phascolarctos_cinereus
ENSMZEG00005012742	RNPS1	77	78.140	ENSPFOG00000009978	RNPS1	77	80.930	Poecilia_formosa
ENSMZEG00005012742	RNPS1	77	78.140	ENSPLAG00000009343	RNPS1	77	80.930	Poecilia_latipinna
ENSMZEG00005012742	RNPS1	77	78.140	ENSPMEG00000008552	RNPS1	77	80.930	Poecilia_mexicana
ENSMZEG00005012742	RNPS1	77	78.140	ENSPREG00000001843	RNPS1	77	80.930	Poecilia_reticulata
ENSMZEG00005012742	RNPS1	100	100.000	ENSPNYG00000000585	RNPS1	100	100.000	Pundamilia_nyererei
ENSMZEG00005012742	RNPS1	82	77.155	ENSPNAG00000025479	RNPS1	82	71.983	Pygocentrus_nattereri
ENSMZEG00005012742	RNPS1	82	72.766	ENSSFOG00015022746	RNPS1	85	71.915	Scleropages_formosus
ENSMZEG00005012742	RNPS1	82	73.276	ENSSFOG00015019341	-	78	65.888	Scleropages_formosus
ENSMZEG00005012742	RNPS1	82	84.279	ENSSMAG00000016933	RNPS1	82	84.279	Scophthalmus_maximus
ENSMZEG00005012742	RNPS1	82	79.654	ENSSDUG00000011453	RNPS1	83	81.385	Seriola_dumerili
ENSMZEG00005012742	RNPS1	80	90.541	ENSSLDG00000021341	RNPS1	81	90.541	Seriola_lalandi_dorsalis
ENSMZEG00005012742	RNPS1	82	80.087	ENSSPAG00000009383	RNPS1	83	87.013	Stegastes_partitus
ENSMZEG00005012742	RNPS1	82	75.536	ENSTRUG00000008602	RNPS1	83	77.682	Takifugu_rubripes
ENSMZEG00005012742	RNPS1	82	75.862	ENSTNIG00000009753	RNPS1	81	78.017	Tetraodon_nigroviridis
ENSMZEG00005012742	RNPS1	82	75.217	ENSXMAG00000004827	RNPS1	82	77.826	Xiphophorus_maculatus