EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005013245 (Gene tree)
Gene ID: 101483911
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 17048 bases
Position: chrLG3:36105323-36122370
Accession: 101483911
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005017615	DND1_DSRM	PF14709.7	1.9e-26	1	1
ENSMZEP00005017615	RRM_1	PF00076.22	2e-41	1	3
ENSMZEP00005017615	RRM_1	PF00076.22	2e-41	2	3
ENSMZEP00005017615	RRM_1	PF00076.22	2e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005018181	-	1767	XM_004565245	ENSMZEP00005017615	588 (aa)	XP_004565302	-

Gene Model

Click here to download ENSMZEG00005013245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005013245's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005013245	a1cf	100	76.795	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSMZEG00005013245	a1cf	100	84.602	ENSAPOG00000008259	a1cf	100	84.602	Acanthochromis_polyacanthus
ENSMZEG00005013245	a1cf	100	77.387	ENSAMEG00000000523	A1CF	100	75.879	Ailuropoda_melanoleuca
ENSMZEG00005013245	a1cf	100	90.049	ENSACIG00000008632	a1cf	100	89.869	Amphilophus_citrinellus
ENSMZEG00005013245	a1cf	100	83.940	ENSAOCG00000023744	a1cf	97	90.313	Amphiprion_ocellaris
ENSMZEG00005013245	a1cf	100	85.265	ENSAPEG00000009537	a1cf	100	86.921	Amphiprion_percula
ENSMZEG00005013245	a1cf	100	87.213	ENSATEG00000013720	a1cf	100	87.213	Anabas_testudineus
ENSMZEG00005013245	a1cf	100	79.027	ENSAPLG00000002964	A1CF	100	78.020	Anas_platyrhynchos
ENSMZEG00005013245	a1cf	100	77.311	ENSACAG00000015269	A1CF	100	77.311	Anolis_carolinensis
ENSMZEG00005013245	a1cf	100	75.960	ENSANAG00000019974	A1CF	100	74.958	Aotus_nancymaae
ENSMZEG00005013245	a1cf	100	92.715	ENSACLG00000017428	a1cf	100	93.046	Astatotilapia_calliptera
ENSMZEG00005013245	a1cf	100	76.151	ENSAMXG00000018180	a1cf	100	76.151	Astyanax_mexicanus
ENSMZEG00005013245	a1cf	100	75.833	ENSBTAG00000021195	A1CF	97	78.424	Bos_taurus
ENSMZEG00005013245	a1cf	100	76.962	ENSCJAG00000005045	A1CF	100	75.960	Callithrix_jacchus
ENSMZEG00005013245	a1cf	100	77.349	ENSCAFG00000015581	A1CF	100	76.678	Canis_familiaris
ENSMZEG00005013245	a1cf	100	77.349	ENSCAFG00020026421	A1CF	98	82.274	Canis_lupus_dingo
ENSMZEG00005013245	a1cf	100	77.333	ENSCHIG00000020411	A1CF	100	76.333	Capra_hircus
ENSMZEG00005013245	a1cf	94	77.087	ENSTSYG00000001755	A1CF	100	75.000	Carlito_syrichta
ENSMZEG00005013245	a1cf	100	73.178	ENSCAPG00000017386	A1CF	100	75.399	Cavia_aperea
ENSMZEG00005013245	a1cf	100	75.960	ENSCPOG00000009807	A1CF	100	75.125	Cavia_porcellus
ENSMZEG00005013245	a1cf	100	77.258	ENSCCAG00000018168	A1CF	100	76.254	Cebus_capucinus
ENSMZEG00005013245	a1cf	100	75.712	ENSCATG00000043715	A1CF	100	74.707	Cercocebus_atys
ENSMZEG00005013245	a1cf	100	76.206	ENSCLAG00000010424	A1CF	100	75.374	Chinchilla_lanigera
ENSMZEG00005013245	a1cf	100	77.219	ENSCSAG00000007032	A1CF	100	76.214	Chlorocebus_sabaeus
ENSMZEG00005013245	a1cf	97	72.391	ENSCHOG00000009089	A1CF	98	71.717	Choloepus_hoffmanni
ENSMZEG00005013245	a1cf	100	79.027	ENSCPBG00000026464	A1CF	100	78.020	Chrysemys_picta_bellii
ENSMZEG00005013245	a1cf	100	77.052	ENSCANG00000038032	A1CF	100	76.047	Colobus_angolensis_palliatus
ENSMZEG00005013245	a1cf	100	76.167	ENSCGRG00001017413	A1cf	100	75.333	Cricetulus_griseus_chok1gshd
ENSMZEG00005013245	a1cf	100	76.333	ENSCGRG00000017332	A1cf	100	75.167	Cricetulus_griseus_crigri
ENSMZEG00005013245	a1cf	100	86.333	ENSCSEG00000002361	a1cf	100	86.333	Cynoglossus_semilaevis
ENSMZEG00005013245	a1cf	100	85.246	ENSCVAG00000010520	a1cf	100	86.230	Cyprinodon_variegatus
ENSMZEG00005013245	a1cf	100	81.032	ENSDARG00000002968	a1cf	100	81.605	Danio_rerio
ENSMZEG00005013245	a1cf	100	76.333	ENSDNOG00000002829	A1CF	100	76.000	Dasypus_novemcinctus
ENSMZEG00005013245	a1cf	80	85.145	ENSETEG00000012527	A1CF	81	85.145	Echinops_telfairi
ENSMZEG00005013245	a1cf	100	76.910	ENSEASG00005012924	A1CF	100	76.246	Equus_asinus_asinus
ENSMZEG00005013245	a1cf	100	76.578	ENSECAG00000010424	A1CF	100	75.914	Equus_caballus
ENSMZEG00005013245	a1cf	76	68.502	ENSEEUG00000000013	A1CF	97	67.181	Erinaceus_europaeus
ENSMZEG00005013245	a1cf	100	82.915	ENSELUG00000003159	a1cf	100	82.915	Esox_lucius
ENSMZEG00005013245	a1cf	100	75.712	ENSFCAG00000011179	A1CF	100	74.958	Felis_catus
ENSMZEG00005013245	a1cf	100	78.356	ENSFALG00000013183	A1CF	100	77.349	Ficedula_albicollis
ENSMZEG00005013245	a1cf	100	74.500	ENSFDAG00000019371	A1CF	100	73.667	Fukomys_damarensis
ENSMZEG00005013245	a1cf	100	78.827	ENSFHEG00000019652	a1cf	96	92.188	Fundulus_heteroclitus
ENSMZEG00005013245	a1cf	100	76.974	ENSGMOG00000018943	a1cf	100	76.480	Gadus_morhua
ENSMZEG00005013245	a1cf	94	79.218	ENSGALG00000003765	A1CF	96	78.153	Gallus_gallus
ENSMZEG00005013245	a1cf	100	78.525	ENSGAFG00000014868	a1cf	100	78.525	Gambusia_affinis
ENSMZEG00005013245	a1cf	100	85.082	ENSGACG00000010241	a1cf	100	85.222	Gasterosteus_aculeatus
ENSMZEG00005013245	a1cf	96	78.284	ENSGAGG00000016508	A1CF	98	77.233	Gopherus_agassizii
ENSMZEG00005013245	a1cf	100	76.795	ENSGGOG00000009670	A1CF	100	76.000	Gorilla_gorilla
ENSMZEG00005013245	a1cf	100	93.301	ENSHBUG00000021959	a1cf	100	93.301	Haplochromis_burtoni
ENSMZEG00005013245	a1cf	100	75.833	ENSHGLG00000008955	A1CF	100	75.208	Heterocephalus_glaber_female
ENSMZEG00005013245	a1cf	100	75.167	ENSHGLG00100000518	A1CF	100	74.542	Heterocephalus_glaber_male
ENSMZEG00005013245	a1cf	100	75.530	ENSHCOG00000017669	a1cf	100	77.325	Hippocampus_comes
ENSMZEG00005013245	a1cf	90	85.158	ENSIPUG00000010367	a1cf	99	83.036	Ictalurus_punctatus
ENSMZEG00005013245	a1cf	100	84.603	ENSKMAG00000006568	a1cf	100	86.341	Kryptolebias_marmoratus
ENSMZEG00005013245	a1cf	99	87.561	ENSLBEG00000020994	a1cf	99	87.725	Labrus_bergylta
ENSMZEG00005013245	a1cf	100	79.062	ENSLACG00000008061	A1CF	100	78.057	Latimeria_chalumnae
ENSMZEG00005013245	a1cf	100	82.580	ENSLOCG00000006302	a1cf	100	81.575	Lepisosteus_oculatus
ENSMZEG00005013245	a1cf	100	76.833	ENSLAFG00000015462	A1CF	100	77.833	Loxodonta_africana
ENSMZEG00005013245	a1cf	100	75.879	ENSMFAG00000035948	A1CF	100	74.874	Macaca_fascicularis
ENSMZEG00005013245	a1cf	100	75.879	ENSMMUG00000007077	A1CF	100	74.874	Macaca_mulatta
ENSMZEG00005013245	a1cf	100	75.712	ENSMNEG00000031454	A1CF	100	74.707	Macaca_nemestrina
ENSMZEG00005013245	a1cf	100	76.884	ENSMLEG00000037223	A1CF	100	75.879	Mandrillus_leucophaeus
ENSMZEG00005013245	a1cf	100	84.779	ENSMAMG00000010402	a1cf	100	86.416	Mastacembelus_armatus
ENSMZEG00005013245	a1cf	100	78.559	ENSMGAG00000001507	A1CF	100	77.554	Meleagris_gallopavo
ENSMZEG00005013245	a1cf	100	75.500	ENSMAUG00000007422	A1cf	100	75.167	Mesocricetus_auratus
ENSMZEG00005013245	a1cf	100	74.793	ENSMICG00000003377	A1CF	100	75.662	Microcebus_murinus
ENSMZEG00005013245	a1cf	100	77.038	ENSMOCG00000021536	A1cf	100	76.206	Microtus_ochrogaster
ENSMZEG00005013245	a1cf	100	77.011	ENSMMOG00000009422	a1cf	100	78.477	Mola_mola
ENSMZEG00005013245	a1cf	90	78.399	ENSMODG00000016478	A1CF	99	76.685	Monodelphis_domestica
ENSMZEG00005013245	a1cf	100	83.503	ENSMALG00000012992	a1cf	100	83.503	Monopterus_albus
ENSMZEG00005013245	a1cf	100	76.000	MGP_CAROLIEiJ_G0022873	A1cf	100	75.000	Mus_caroli
ENSMZEG00005013245	a1cf	100	76.000	ENSMUSG00000052595	A1cf	99	81.510	Mus_musculus
ENSMZEG00005013245	a1cf	100	75.500	MGP_PahariEiJ_G0014366	A1cf	100	74.500	Mus_pahari
ENSMZEG00005013245	a1cf	100	76.539	MGP_SPRETEiJ_G0023792	A1cf	100	75.541	Mus_spretus
ENSMZEG00005013245	a1cf	100	71.022	ENSMPUG00000016971	A1CF	100	70.017	Mustela_putorius_furo
ENSMZEG00005013245	a1cf	100	77.333	ENSMLUG00000016071	A1CF	100	76.167	Myotis_lucifugus
ENSMZEG00005013245	a1cf	100	76.333	ENSNGAG00000015136	A1cf	100	75.333	Nannospalax_galili
ENSMZEG00005013245	a1cf	100	92.810	ENSNBRG00000001712	a1cf	100	92.810	Neolamprologus_brichardi
ENSMZEG00005013245	a1cf	100	76.833	ENSNLEG00000012028	A1CF	100	75.833	Nomascus_leucogenys
ENSMZEG00005013245	a1cf	94	76.868	ENSMEUG00000015909	A1CF	100	75.801	Notamacropus_eugenii
ENSMZEG00005013245	a1cf	89	70.076	ENSOPRG00000010667	A1CF	97	69.043	Ochotona_princeps
ENSMZEG00005013245	a1cf	100	92.985	ENSONIG00000019105	a1cf	100	92.985	Oreochromis_niloticus
ENSMZEG00005013245	a1cf	79	76.858	ENSOANG00000007360	A1CF	99	76.858	Ornithorhynchus_anatinus
ENSMZEG00005013245	a1cf	100	74.709	ENSOCUG00000011587	A1CF	100	74.043	Oryctolagus_cuniculus
ENSMZEG00005013245	a1cf	100	85.124	ENSORLG00000013342	a1cf	100	85.124	Oryzias_latipes
ENSMZEG00005013245	a1cf	100	84.967	ENSORLG00020000586	a1cf	100	85.458	Oryzias_latipes_hni
ENSMZEG00005013245	a1cf	100	84.967	ENSORLG00015018569	a1cf	100	85.458	Oryzias_latipes_hsok
ENSMZEG00005013245	a1cf	100	83.987	ENSOMEG00000013531	a1cf	100	83.987	Oryzias_melastigma
ENSMZEG00005013245	a1cf	100	75.879	ENSOGAG00000012884	A1CF	100	76.756	Otolemur_garnettii
ENSMZEG00005013245	a1cf	100	77.000	ENSOARG00000013695	A1CF	100	76.000	Ovis_aries
ENSMZEG00005013245	a1cf	97	75.690	ENSPPAG00000028115	A1CF	99	80.282	Pan_paniscus
ENSMZEG00005013245	a1cf	100	76.884	ENSPPRG00000012180	A1CF	100	76.127	Panthera_pardus
ENSMZEG00005013245	a1cf	100	76.884	ENSPTIG00000021223	A1CF	100	76.127	Panthera_tigris_altaica
ENSMZEG00005013245	a1cf	100	76.795	ENSPTRG00000002508	A1CF	100	76.000	Pan_troglodytes
ENSMZEG00005013245	a1cf	100	75.879	ENSPANG00000021988	A1CF	100	74.874	Papio_anubis
ENSMZEG00005013245	a1cf	100	81.167	ENSPKIG00000025176	a1cf	100	81.364	Paramormyrops_kingsleyae
ENSMZEG00005013245	a1cf	100	77.517	ENSPSIG00000010318	A1CF	100	76.510	Pelodiscus_sinensis
ENSMZEG00005013245	a1cf	98	72.884	ENSPMGG00000013359	a1cf	99	72.712	Periophthalmus_magnuspinnatus
ENSMZEG00005013245	a1cf	100	76.500	ENSPEMG00000015021	A1cf	100	75.500	Peromyscus_maniculatus_bairdii
ENSMZEG00005013245	a1cf	100	76.007	ENSPCIG00000002175	A1CF	100	76.678	Phascolarctos_cinereus
ENSMZEG00005013245	a1cf	100	85.227	ENSPFOG00000006683	a1cf	100	86.971	Poecilia_formosa
ENSMZEG00005013245	a1cf	100	85.668	ENSPFOG00000007437	-	100	86.808	Poecilia_formosa
ENSMZEG00005013245	a1cf	100	84.528	ENSPLAG00000001210	-	100	85.668	Poecilia_latipinna
ENSMZEG00005013245	a1cf	100	84.528	ENSPLAG00000000026	a1cf	100	85.668	Poecilia_latipinna
ENSMZEG00005013245	a1cf	100	76.346	ENSPMEG00000000921	a1cf	100	78.069	Poecilia_mexicana
ENSMZEG00005013245	a1cf	100	77.651	ENSPMEG00000015529	-	100	79.378	Poecilia_mexicana
ENSMZEG00005013245	a1cf	100	85.505	ENSPREG00000016298	a1cf	100	86.645	Poecilia_reticulata
ENSMZEG00005013245	a1cf	100	75.667	ENSPPYG00000002819	A1CF	100	74.667	Pongo_abelii
ENSMZEG00005013245	a1cf	79	59.454	ENSPCAG00000006463	A1CF	79	59.454	Procavia_capensis
ENSMZEG00005013245	a1cf	100	76.040	ENSPCOG00000024172	A1CF	100	76.705	Propithecus_coquereli
ENSMZEG00005013245	a1cf	100	94.608	ENSPNYG00000017944	a1cf	100	94.608	Pundamilia_nyererei
ENSMZEG00005013245	a1cf	100	81.908	ENSPNAG00000007704	a1cf	100	81.878	Pygocentrus_nattereri
ENSMZEG00005013245	a1cf	100	75.874	ENSRNOG00000033195	A1cf	100	74.875	Rattus_norvegicus
ENSMZEG00005013245	a1cf	100	71.619	ENSRBIG00000042892	A1CF	100	72.461	Rhinopithecus_bieti
ENSMZEG00005013245	a1cf	100	77.052	ENSRROG00000041398	A1CF	100	76.047	Rhinopithecus_roxellana
ENSMZEG00005013245	a1cf	100	77.167	ENSSBOG00000021930	A1CF	100	76.421	Saimiri_boliviensis_boliviensis
ENSMZEG00005013245	a1cf	100	77.592	ENSSHAG00000005096	A1CF	100	76.589	Sarcophilus_harrisii
ENSMZEG00005013245	a1cf	100	81.878	ENSSFOG00015011774	a1cf	100	82.178	Scleropages_formosus
ENSMZEG00005013245	a1cf	100	85.644	ENSSMAG00000013271	a1cf	100	86.949	Scophthalmus_maximus
ENSMZEG00005013245	a1cf	100	91.107	ENSSDUG00000013930	a1cf	100	91.092	Seriola_dumerili
ENSMZEG00005013245	a1cf	100	81.956	ENSSLDG00000004290	a1cf	100	81.469	Seriola_lalandi_dorsalis
ENSMZEG00005013245	a1cf	95	67.487	ENSSARG00000005940	A1CF	95	68.190	Sorex_araneus
ENSMZEG00005013245	a1cf	97	76.132	ENSSPUG00000006797	A1CF	95	75.929	Sphenodon_punctatus
ENSMZEG00005013245	a1cf	100	77.833	ENSSSCG00000010431	A1CF	100	76.833	Sus_scrofa
ENSMZEG00005013245	a1cf	100	78.477	ENSTGUG00000005090	A1CF	100	77.483	Taeniopygia_guttata
ENSMZEG00005013245	a1cf	100	84.202	ENSTRUG00000001982	a1cf	100	84.691	Takifugu_rubripes
ENSMZEG00005013245	a1cf	100	84.279	ENSTNIG00000003580	a1cf	100	84.279	Tetraodon_nigroviridis
ENSMZEG00005013245	a1cf	97	70.740	ENSTTRG00000013190	A1CF	95	69.707	Tursiops_truncatus
ENSMZEG00005013245	a1cf	100	75.544	ENSUAMG00000020065	A1CF	100	74.539	Ursus_americanus
ENSMZEG00005013245	a1cf	100	77.311	ENSUMAG00000011162	A1CF	100	76.303	Ursus_maritimus
ENSMZEG00005013245	a1cf	87	74.095	ENSVPAG00000006130	A1CF	86	72.952	Vicugna_pacos
ENSMZEG00005013245	a1cf	100	76.342	ENSVVUG00000002504	A1CF	100	75.671	Vulpes_vulpes
ENSMZEG00005013245	a1cf	100	72.697	ENSXETG00000006611	a1cf	100	72.697	Xenopus_tropicalis
ENSMZEG00005013245	a1cf	100	86.230	ENSXCOG00000003302	a1cf	100	86.230	Xiphophorus_couchianus
ENSMZEG00005013245	a1cf	100	87.541	ENSXMAG00000016703	a1cf	100	87.541	Xiphophorus_maculatus