EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005013404 (Gene tree)
Gene ID: 101472858
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 13262 bases
Position: chrLG6:37930996-37944257
Accession: 101472858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005017822	PAT1	PF09770.9	1.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005018406	-	3207	XM_004538682	ENSMZEP00005017822	825 (aa)	XP_004538739	UPI000D2FFF50

Gene Model

Click here to download ENSMZEG00005013404's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005013404's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005013404	patl1	84	49.847	ENSG00000166889	PATL1	62	66.667	Homo_sapiens
ENSMZEG00005013404	patl1	86	83.006	ENSAPOG00000021290	patl1	99	88.920	Acanthochromis_polyacanthus
ENSMZEG00005013404	patl1	84	50.459	ENSAMEG00000014215	PATL1	62	66.667	Ailuropoda_melanoleuca
ENSMZEG00005013404	patl1	99	81.356	ENSACIG00000005182	patl1	92	87.535	Amphilophus_citrinellus
ENSMZEG00005013404	patl1	94	81.458	ENSAOCG00000021993	patl1	95	82.398	Amphiprion_ocellaris
ENSMZEG00005013404	patl1	99	87.139	ENSAPEG00000021391	patl1	100	88.475	Amphiprion_percula
ENSMZEG00005013404	patl1	100	84.790	ENSATEG00000002230	patl1	100	82.994	Anabas_testudineus
ENSMZEG00005013404	patl1	52	35.294	ENSATEG00000019567	patl2	60	36.111	Anabas_testudineus
ENSMZEG00005013404	patl1	51	38.667	ENSAPLG00000003980	PATL2	64	40.299	Anas_platyrhynchos
ENSMZEG00005013404	patl1	51	49.571	ENSAPLG00000013394	PATL1	64	54.747	Anas_platyrhynchos
ENSMZEG00005013404	patl1	80	50.560	ENSACAG00000006607	PATL1	62	62.712	Anolis_carolinensis
ENSMZEG00005013404	patl1	84	49.847	ENSANAG00000023078	PATL1	62	66.667	Aotus_nancymaae
ENSMZEG00005013404	patl1	100	99.758	ENSACLG00000005144	patl1	100	99.758	Astatotilapia_calliptera
ENSMZEG00005013404	patl1	60	86.432	ENSAMXG00000010731	patl1	100	73.887	Astyanax_mexicanus
ENSMZEG00005013404	patl1	52	37.143	ENSAMXG00000020293	patl2	57	38.191	Astyanax_mexicanus
ENSMZEG00005013404	patl1	84	50.382	ENSBTAG00000005913	PATL1	62	66.667	Bos_taurus
ENSMZEG00005013404	patl1	84	49.847	ENSCJAG00000016192	PATL1	62	66.667	Callithrix_jacchus
ENSMZEG00005013404	patl1	51	36.404	ENSCJAG00000002379	PATL2	72	37.838	Callithrix_jacchus
ENSMZEG00005013404	patl1	84	50.612	ENSCAFG00000007581	PATL1	62	66.667	Canis_familiaris
ENSMZEG00005013404	patl1	84	50.689	ENSCAFG00020001648	PATL1	64	66.667	Canis_lupus_dingo
ENSMZEG00005013404	patl1	84	49.160	ENSCHIG00000025913	PATL1	63	66.667	Capra_hircus
ENSMZEG00005013404	patl1	52	38.375	ENSCHIG00000026665	PATL2	74	39.604	Capra_hircus
ENSMZEG00005013404	patl1	84	49.924	ENSTSYG00000012748	PATL1	62	66.667	Carlito_syrichta
ENSMZEG00005013404	patl1	51	36.629	ENSTSYG00000032456	PATL2	72	37.010	Carlito_syrichta
ENSMZEG00005013404	patl1	84	50.485	ENSCAPG00000013668	PATL1	61	68.333	Cavia_aperea
ENSMZEG00005013404	patl1	84	50.485	ENSCPOG00000006827	PATL1	60	68.333	Cavia_porcellus
ENSMZEG00005013404	patl1	84	49.847	ENSCCAG00000023759	PATL1	62	66.667	Cebus_capucinus
ENSMZEG00005013404	patl1	84	49.694	ENSCATG00000009629	PATL1	62	66.667	Cercocebus_atys
ENSMZEG00005013404	patl1	83	49.544	ENSCLAG00000003427	PATL1	61	69.231	Chinchilla_lanigera
ENSMZEG00005013404	patl1	72	49.694	ENSCSAG00000006095	PATL1	60	53.717	Chlorocebus_sabaeus
ENSMZEG00005013404	patl1	60	57.576	ENSCHOG00000001611	PATL1	82	57.576	Choloepus_hoffmanni
ENSMZEG00005013404	patl1	84	49.694	ENSCANG00000039197	PATL1	62	66.102	Colobus_angolensis_palliatus
ENSMZEG00005013404	patl1	51	36.465	ENSCANG00000013856	PATL2	73	37.805	Colobus_angolensis_palliatus
ENSMZEG00005013404	patl1	83	50.617	ENSCGRG00001024927	Patl1	62	66.667	Cricetulus_griseus_chok1gshd
ENSMZEG00005013404	patl1	83	50.617	ENSCGRG00000000461	Patl1	61	67.308	Cricetulus_griseus_crigri
ENSMZEG00005013404	patl1	100	81.840	ENSCSEG00000008261	patl1	100	81.026	Cynoglossus_semilaevis
ENSMZEG00005013404	patl1	50	34.107	ENSCSEG00000009438	patl2	57	33.756	Cynoglossus_semilaevis
ENSMZEG00005013404	patl1	74	85.000	ENSCVAG00000006664	patl1	85	85.000	Cyprinodon_variegatus
ENSMZEG00005013404	patl1	100	71.531	ENSDARG00000017423	patl1	100	69.378	Danio_rerio
ENSMZEG00005013404	patl1	73	48.517	ENSDNOG00000038865	PATL1	75	52.885	Dasypus_novemcinctus
ENSMZEG00005013404	patl1	84	49.464	ENSDORG00000000237	Patl1	62	68.333	Dipodomys_ordii
ENSMZEG00005013404	patl1	84	50.152	ENSEASG00005007963	PATL1	64	66.667	Equus_asinus_asinus
ENSMZEG00005013404	patl1	51	35.682	ENSEASG00005017984	PATL2	71	36.567	Equus_asinus_asinus
ENSMZEG00005013404	patl1	51	35.714	ENSECAG00000013462	PATL2	72	36.585	Equus_caballus
ENSMZEG00005013404	patl1	84	50.305	ENSECAG00000011411	PATL1	62	66.667	Equus_caballus
ENSMZEG00005013404	patl1	58	35.119	ENSELUG00000023244	patl2	54	37.374	Esox_lucius
ENSMZEG00005013404	patl1	100	70.968	ENSELUG00000024249	patl1	52	86.650	Esox_lucius
ENSMZEG00005013404	patl1	51	37.330	ENSFCAG00000027170	PATL2	74	38.177	Felis_catus
ENSMZEG00005013404	patl1	84	50.383	ENSFCAG00000015573	PATL1	62	66.667	Felis_catus
ENSMZEG00005013404	patl1	58	34.921	ENSFALG00000009768	PATL2	55	37.215	Ficedula_albicollis
ENSMZEG00005013404	patl1	82	51.385	ENSFALG00000012150	PATL1	62	62.712	Ficedula_albicollis
ENSMZEG00005013404	patl1	83	49.541	ENSFDAG00000016128	PATL1	61	67.308	Fukomys_damarensis
ENSMZEG00005013404	patl1	99	83.354	ENSFHEG00000017790	patl1	100	83.213	Fundulus_heteroclitus
ENSMZEG00005013404	patl1	54	36.017	ENSGALG00000002167	PATL2	50	37.931	Gallus_gallus
ENSMZEG00005013404	patl1	80	66.667	ENSGALG00000042641	PATL1	63	66.667	Gallus_gallus
ENSMZEG00005013404	patl1	100	84.058	ENSGAFG00000006508	patl1	100	83.092	Gambusia_affinis
ENSMZEG00005013404	patl1	81	86.207	ENSGACG00000016448	patl1	98	85.000	Gasterosteus_aculeatus
ENSMZEG00005013404	patl1	78	66.667	ENSGAGG00000004461	PATL1	64	66.667	Gopherus_agassizii
ENSMZEG00005013404	patl1	84	49.847	ENSGGOG00000004335	PATL1	64	66.667	Gorilla_gorilla
ENSMZEG00005013404	patl1	100	99.273	ENSHBUG00000005365	patl1	100	99.273	Haplochromis_burtoni
ENSMZEG00005013404	patl1	84	49.515	ENSHGLG00000018173	PATL1	62	68.333	Heterocephalus_glaber_female
ENSMZEG00005013404	patl1	83	49.388	ENSHGLG00100003453	PATL1	63	58.621	Heterocephalus_glaber_male
ENSMZEG00005013404	patl1	100	80.505	ENSHCOG00000001898	patl1	100	79.783	Hippocampus_comes
ENSMZEG00005013404	patl1	51	35.556	ENSSTOG00000033848	PATL2	72	37.408	Ictidomys_tridecemlineatus
ENSMZEG00005013404	patl1	82	50.612	ENSSTOG00000013764	PATL1	61	67.347	Ictidomys_tridecemlineatus
ENSMZEG00005013404	patl1	83	49.541	ENSJJAG00000010135	Patl1	61	69.231	Jaculus_jaculus
ENSMZEG00005013404	patl1	100	87.726	ENSKMAG00000020848	patl1	100	88.207	Kryptolebias_marmoratus
ENSMZEG00005013404	patl1	50	35.648	ENSLBEG00000022344	patl2	53	36.524	Labrus_bergylta
ENSMZEG00005013404	patl1	100	88.278	ENSLBEG00000023617	patl1	100	87.665	Labrus_bergylta
ENSMZEG00005013404	patl1	75	65.385	ENSLACG00000004640	PATL1	63	68.750	Latimeria_chalumnae
ENSMZEG00005013404	patl1	100	61.502	ENSLOCG00000000717	patl1	100	61.665	Lepisosteus_oculatus
ENSMZEG00005013404	patl1	84	50.459	ENSLAFG00000015161	PATL1	62	66.667	Loxodonta_africana
ENSMZEG00005013404	patl1	84	49.694	ENSMFAG00000040851	PATL1	62	66.667	Macaca_fascicularis
ENSMZEG00005013404	patl1	84	49.694	ENSMMUG00000017287	PATL1	62	66.667	Macaca_mulatta
ENSMZEG00005013404	patl1	84	49.694	ENSMNEG00000038692	PATL1	62	66.667	Macaca_nemestrina
ENSMZEG00005013404	patl1	84	49.541	ENSMLEG00000030044	PATL1	62	66.667	Mandrillus_leucophaeus
ENSMZEG00005013404	patl1	100	86.108	ENSMAMG00000003950	patl1	100	85.030	Mastacembelus_armatus
ENSMZEG00005013404	patl1	73	67.857	ENSMGAG00000003406	PATL1	59	67.857	Meleagris_gallopavo
ENSMZEG00005013404	patl1	55	35.129	ENSMAUG00000001008	Patl2	75	36.456	Mesocricetus_auratus
ENSMZEG00005013404	patl1	71	44.688	ENSMAUG00000012059	Patl1	72	52.597	Mesocricetus_auratus
ENSMZEG00005013404	patl1	84	47.573	ENSMICG00000004172	PATL1	60	66.667	Microcebus_murinus
ENSMZEG00005013404	patl1	83	50.617	ENSMOCG00000010087	Patl1	62	66.667	Microtus_ochrogaster
ENSMZEG00005013404	patl1	80	83.624	ENSMMOG00000013711	patl1	93	91.667	Mola_mola
ENSMZEG00005013404	patl1	80	51.185	ENSMODG00000020201	PATL1	62	66.667	Monodelphis_domestica
ENSMZEG00005013404	patl1	51	37.143	ENSMODG00000017690	PATL2	71	38.072	Monodelphis_domestica
ENSMZEG00005013404	patl1	95	74.013	ENSMALG00000018706	patl1	96	93.207	Monopterus_albus
ENSMZEG00005013404	patl1	84	51.223	MGP_CAROLIEiJ_G0022739	Patl1	62	66.667	Mus_caroli
ENSMZEG00005013404	patl1	84	50.765	ENSMUSG00000046139	Patl1	62	66.667	Mus_musculus
ENSMZEG00005013404	patl1	84	51.070	MGP_PahariEiJ_G0014233	Patl1	62	66.667	Mus_pahari
ENSMZEG00005013404	patl1	84	50.917	MGP_SPRETEiJ_G0023652	Patl1	62	66.667	Mus_spretus
ENSMZEG00005013404	patl1	84	50.459	ENSMPUG00000014607	PATL1	62	66.667	Mustela_putorius_furo
ENSMZEG00005013404	patl1	84	50.789	ENSMLUG00000011169	PATL1	63	66.667	Myotis_lucifugus
ENSMZEG00005013404	patl1	84	49.771	ENSNGAG00000003682	Patl1	61	66.667	Nannospalax_galili
ENSMZEG00005013404	patl1	66	98.788	ENSNBRG00000015372	patl1	75	98.788	Neolamprologus_brichardi
ENSMZEG00005013404	patl1	84	48.598	ENSNLEG00000013081	PATL1	64	66.667	Nomascus_leucogenys
ENSMZEG00005013404	patl1	56	57.047	ENSMEUG00000009391	PATL1	73	56.667	Notamacropus_eugenii
ENSMZEG00005013404	patl1	57	58.000	ENSOPRG00000007963	PATL1	75	58.000	Ochotona_princeps
ENSMZEG00005013404	patl1	100	97.939	ENSONIG00000004170	patl1	100	97.939	Oreochromis_niloticus
ENSMZEG00005013404	patl1	80	51.278	ENSOCUG00000002156	PATL1	62	66.667	Oryctolagus_cuniculus
ENSMZEG00005013404	patl1	84	49.694	ENSOGAG00000004351	PATL1	62	66.667	Otolemur_garnettii
ENSMZEG00005013404	patl1	84	49.466	ENSOARG00000012005	PATL1	59	61.017	Ovis_aries
ENSMZEG00005013404	patl1	50	37.300	ENSOARG00000003762	PATL2	72	38.442	Ovis_aries
ENSMZEG00005013404	patl1	84	49.847	ENSPPAG00000034275	PATL1	63	66.667	Pan_paniscus
ENSMZEG00005013404	patl1	51	36.652	ENSPPRG00000004279	PATL2	73	37.624	Panthera_pardus
ENSMZEG00005013404	patl1	83	50.383	ENSPPRG00000020639	PATL1	61	67.308	Panthera_pardus
ENSMZEG00005013404	patl1	84	50.383	ENSPTIG00000019298	PATL1	62	66.667	Panthera_tigris_altaica
ENSMZEG00005013404	patl1	51	36.652	ENSPTIG00000018964	PATL2	74	37.438	Panthera_tigris_altaica
ENSMZEG00005013404	patl1	84	47.573	ENSPTRG00000003697	PATL1	91	66.667	Pan_troglodytes
ENSMZEG00005013404	patl1	84	49.694	ENSPANG00000035620	PATL1	62	66.667	Papio_anubis
ENSMZEG00005013404	patl1	100	71.049	ENSPKIG00000016224	patl1	100	70.205	Paramormyrops_kingsleyae
ENSMZEG00005013404	patl1	82	65.000	ENSPSIG00000016206	PATL1	59	65.000	Pelodiscus_sinensis
ENSMZEG00005013404	patl1	100	79.227	ENSPMGG00000002644	patl1	100	77.778	Periophthalmus_magnuspinnatus
ENSMZEG00005013404	patl1	52	33.483	ENSPMGG00000014550	patl2	62	34.606	Periophthalmus_magnuspinnatus
ENSMZEG00005013404	patl1	83	50.772	ENSPEMG00000014215	Patl1	62	66.667	Peromyscus_maniculatus_bairdii
ENSMZEG00005013404	patl1	50	36.092	ENSPEMG00000016509	Patl2	67	37.883	Peromyscus_maniculatus_bairdii
ENSMZEG00005013404	patl1	83	50.305	ENSPCIG00000010852	PATL1	62	66.667	Phascolarctos_cinereus
ENSMZEG00005013404	patl1	100	81.062	ENSPFOG00000007768	patl1	100	81.842	Poecilia_formosa
ENSMZEG00005013404	patl1	100	82.750	ENSPLAG00000018465	patl1	100	83.112	Poecilia_latipinna
ENSMZEG00005013404	patl1	100	83.353	ENSPMEG00000006555	patl1	100	82.871	Poecilia_mexicana
ENSMZEG00005013404	patl1	90	80.780	ENSPREG00000003874	patl1	95	80.108	Poecilia_reticulata
ENSMZEG00005013404	patl1	84	50.000	ENSPPYG00000003230	PATL1	62	66.667	Pongo_abelii
ENSMZEG00005013404	patl1	84	49.694	ENSPCOG00000020770	PATL1	64	66.667	Propithecus_coquereli
ENSMZEG00005013404	patl1	52	37.445	ENSPCOG00000000295	PATL2	99	39.892	Propithecus_coquereli
ENSMZEG00005013404	patl1	69	49.597	ENSPVAG00000015239	PATL1	63	50.976	Pteropus_vampyrus
ENSMZEG00005013404	patl1	100	80.727	ENSPNYG00000018936	patl1	100	80.727	Pundamilia_nyererei
ENSMZEG00005013404	patl1	51	37.778	ENSPNAG00000002315	patl2	57	38.750	Pygocentrus_nattereri
ENSMZEG00005013404	patl1	100	74.519	ENSPNAG00000017907	patl1	100	74.217	Pygocentrus_nattereri
ENSMZEG00005013404	patl1	85	50.459	ENSRNOG00000021052	Patl1	62	66.667	Rattus_norvegicus
ENSMZEG00005013404	patl1	84	47.573	ENSRBIG00000032263	PATL1	82	66.667	Rhinopithecus_bieti
ENSMZEG00005013404	patl1	84	49.694	ENSRROG00000032861	PATL1	62	66.667	Rhinopithecus_roxellana
ENSMZEG00005013404	patl1	84	49.847	ENSSBOG00000025195	PATL1	63	66.667	Saimiri_boliviensis_boliviensis
ENSMZEG00005013404	patl1	83	50.152	ENSSHAG00000004309	PATL1	62	66.667	Sarcophilus_harrisii
ENSMZEG00005013404	patl1	100	70.411	ENSSFOG00015009614	patl1	100	70.723	Scleropages_formosus
ENSMZEG00005013404	patl1	100	84.856	ENSSMAG00000009482	patl1	100	84.976	Scophthalmus_maximus
ENSMZEG00005013404	patl1	100	85.850	ENSSDUG00000005362	patl1	100	85.850	Seriola_dumerili
ENSMZEG00005013404	patl1	100	85.476	ENSSLDG00000019146	patl1	100	85.476	Seriola_lalandi_dorsalis
ENSMZEG00005013404	patl1	57	51.048	ENSSARG00000009600	PATL1	54	55.396	Sorex_araneus
ENSMZEG00005013404	patl1	83	52.322	ENSSPUG00000009453	PATL1	63	70.000	Sphenodon_punctatus
ENSMZEG00005013404	patl1	85	48.217	ENSSSCG00000013124	PATL1	62	66.667	Sus_scrofa
ENSMZEG00005013404	patl1	84	50.305	ENSTGUG00000006222	PATL1	61	64.286	Taeniopygia_guttata
ENSMZEG00005013404	patl1	100	72.129	ENSTRUG00000000709	patl1	100	70.808	Takifugu_rubripes
ENSMZEG00005013404	patl1	74	47.664	ENSTBEG00000000796	PATL1	60	61.538	Tupaia_belangeri
ENSMZEG00005013404	patl1	63	54.712	ENSTTRG00000009389	PATL1	83	53.807	Tursiops_truncatus
ENSMZEG00005013404	patl1	83	50.383	ENSUMAG00000018634	PATL1	63	77.778	Ursus_maritimus
ENSMZEG00005013404	patl1	84	50.395	ENSVVUG00000016668	PATL1	64	65.000	Vulpes_vulpes
ENSMZEG00005013404	patl1	68	88.136	ENSXCOG00000010808	patl1	99	87.719	Xiphophorus_couchianus
ENSMZEG00005013404	patl1	100	83.575	ENSXMAG00000013834	patl1	100	82.729	Xiphophorus_maculatus
ENSMZEG00005013404	patl1	52	35.747	ENSXMAG00000018464	patl2	54	36.548	Xiphophorus_maculatus