EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005013590 (Gene tree)
Gene ID: 101487719
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 11411 bases
Position: chrLG6:2595545-2606955
Accession: 101487719
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005018157	RNA_bind	PF08675.11	9.8e-34	1	1
ENSMZEP00005018134	RNA_bind	PF08675.11	1.3e-33	1	1
ENSMZEP00005018124	RNA_bind	PF08675.11	1.3e-33	1	1
ENSMZEP00005018134	CAF1	PF04857.20	3.9e-90	1	1
ENSMZEP00005018124	CAF1	PF04857.20	4e-90	1	1
ENSMZEP00005018157	CAF1	PF04857.20	5e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005018713	-	3645	XM_014411400	ENSMZEP00005018124	677 (aa)	XP_014266886	UPI0006466732
ENSMZET00005018746	-	1785	-	ENSMZEP00005018157	594 (aa)	-	-
ENSMZET00005018723	-	2377	-	ENSMZEP00005018134	672 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005013590's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005013590's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005013590	parn	90	77.425	ENSG00000140694	PARN	99	70.383	Homo_sapiens
ENSMZEG00005013590	parn	95	73.030	ENSAMEG00000011208	PARN	89	73.030	Ailuropoda_melanoleuca
ENSMZEG00005013590	parn	94	89.445	ENSACIG00000000619	parn	99	85.446	Amphilophus_citrinellus
ENSMZEG00005013590	parn	100	88.630	ENSAOCG00000003465	parn	100	89.067	Amphiprion_ocellaris
ENSMZEG00005013590	parn	90	86.304	ENSAPEG00000010661	parn	94	94.479	Amphiprion_percula
ENSMZEG00005013590	parn	100	90.351	ENSATEG00000004661	parn	100	90.351	Anabas_testudineus
ENSMZEG00005013590	parn	94	74.113	ENSAPLG00000013914	PARN	91	74.483	Anas_platyrhynchos
ENSMZEG00005013590	parn	95	74.126	ENSACAG00000004973	PARN	90	73.898	Anolis_carolinensis
ENSMZEG00005013590	parn	90	77.052	ENSANAG00000031516	PARN	94	77.966	Aotus_nancymaae
ENSMZEG00005013590	parn	100	99.852	ENSACLG00000004742	parn	100	99.852	Astatotilapia_calliptera
ENSMZEG00005013590	parn	100	72.312	ENSAMXG00000012390	parn	96	76.382	Astyanax_mexicanus
ENSMZEG00005013590	parn	95	70.202	ENSBTAG00000018097	PARN	90	73.805	Bos_taurus
ENSMZEG00005013590	parn	90	77.425	ENSCJAG00000015866	PARN	94	77.966	Callithrix_jacchus
ENSMZEG00005013590	parn	98	72.213	ENSCAFG00000018795	PARN	90	74.266	Canis_familiaris
ENSMZEG00005013590	parn	98	72.556	ENSCAFG00020024126	PARN	90	74.611	Canis_lupus_dingo
ENSMZEG00005013590	parn	95	73.509	ENSCHIG00000018143	PARN	91	74.227	Capra_hircus
ENSMZEG00005013590	parn	79	51.240	ENSCAPG00000007984	PARN	78	51.351	Cavia_aperea
ENSMZEG00005013590	parn	90	75.933	ENSCPOG00000002263	PARN	91	73.801	Cavia_porcellus
ENSMZEG00005013590	parn	90	77.425	ENSCCAG00000030367	PARN	94	77.966	Cebus_capucinus
ENSMZEG00005013590	parn	100	68.342	ENSCATG00000041368	PARN	100	77.966	Cercocebus_atys
ENSMZEG00005013590	parn	57	32.639	ENSCATG00000033196	PNLDC1	72	33.333	Cercocebus_atys
ENSMZEG00005013590	parn	90	76.306	ENSCLAG00000015406	PARN	91	73.810	Chinchilla_lanigera
ENSMZEG00005013590	parn	90	77.425	ENSCSAG00000008142	PARN	92	74.199	Chlorocebus_sabaeus
ENSMZEG00005013590	parn	94	56.483	ENSCHOG00000007014	PARN	91	58.031	Choloepus_hoffmanni
ENSMZEG00005013590	parn	85	73.870	ENSCPBG00000006609	PARN	90	75.191	Chrysemys_picta_bellii
ENSMZEG00005013590	parn	87	41.308	ENSCING00000010142	-	99	42.322	Ciona_intestinalis
ENSMZEG00005013590	parn	90	65.392	ENSCANG00000028849	-	89	77.966	Colobus_angolensis_palliatus
ENSMZEG00005013590	parn	100	67.296	ENSCGRG00001012096	Parn	100	67.610	Cricetulus_griseus_chok1gshd
ENSMZEG00005013590	parn	100	67.296	ENSCGRG00000004939	Parn	100	67.610	Cricetulus_griseus_crigri
ENSMZEG00005013590	parn	100	82.703	ENSCSEG00000002064	parn	100	82.533	Cynoglossus_semilaevis
ENSMZEG00005013590	parn	100	85.526	ENSCVAG00000014848	parn	100	84.795	Cyprinodon_variegatus
ENSMZEG00005013590	parn	100	67.249	ENSDARG00000102634	parn	100	67.103	Danio_rerio
ENSMZEG00005013590	parn	95	73.684	ENSDNOG00000000833	PARN	94	79.213	Dasypus_novemcinctus
ENSMZEG00005013590	parn	71	71.053	ENSETEG00000014828	-	69	75.758	Echinops_telfairi
ENSMZEG00005013590	parn	90	75.933	ENSEASG00005011400	PARN	92	72.148	Equus_asinus_asinus
ENSMZEG00005013590	parn	90	75.746	ENSECAG00000017792	PARN	92	71.980	Equus_caballus
ENSMZEG00005013590	parn	57	32.639	ENSECAG00000012898	PNLDC1	69	32.639	Equus_caballus
ENSMZEG00005013590	parn	72	63.964	ENSEEUG00000010370	PARN	78	63.964	Erinaceus_europaeus
ENSMZEG00005013590	parn	100	75.687	ENSELUG00000013139	parn	90	75.977	Esox_lucius
ENSMZEG00005013590	parn	98	72.727	ENSFCAG00000044961	PARN	87	76.271	Felis_catus
ENSMZEG00005013590	parn	94	74.067	ENSFALG00000003911	PARN	90	74.271	Ficedula_albicollis
ENSMZEG00005013590	parn	93	74.457	ENSFDAG00000009234	PARN	90	74.739	Fukomys_damarensis
ENSMZEG00005013590	parn	93	80.071	ENSFHEG00000013738	parn	92	91.525	Fundulus_heteroclitus
ENSMZEG00005013590	parn	93	82.821	ENSGMOG00000003231	parn	99	85.273	Gadus_morhua
ENSMZEG00005013590	parn	100	68.281	ENSGALG00000003091	PARN	100	68.281	Gallus_gallus
ENSMZEG00005013590	parn	100	84.840	ENSGAFG00000011061	parn	100	84.111	Gambusia_affinis
ENSMZEG00005013590	parn	100	78.150	ENSGACG00000019501	parn	100	78.309	Gasterosteus_aculeatus
ENSMZEG00005013590	parn	90	77.425	ENSGGOG00000025224	PARN	94	75.000	Gorilla_gorilla
ENSMZEG00005013590	parn	100	99.705	ENSHBUG00000017906	parn	100	99.705	Haplochromis_burtoni
ENSMZEG00005013590	parn	90	75.746	ENSHGLG00000010886	PARN	91	73.459	Heterocephalus_glaber_female
ENSMZEG00005013590	parn	90	75.746	ENSHGLG00100014659	PARN	91	73.459	Heterocephalus_glaber_male
ENSMZEG00005013590	parn	99	77.797	ENSHCOG00000008683	parn	94	84.249	Hippocampus_comes
ENSMZEG00005013590	parn	91	71.165	ENSIPUG00000012401	parn	100	61.842	Ictalurus_punctatus
ENSMZEG00005013590	parn	95	72.105	ENSSTOG00000007519	PARN	91	73.702	Ictidomys_tridecemlineatus
ENSMZEG00005013590	parn	100	67.987	ENSJJAG00000023049	Parn	100	67.670	Jaculus_jaculus
ENSMZEG00005013590	parn	100	86.550	ENSKMAG00000009462	parn	100	86.550	Kryptolebias_marmoratus
ENSMZEG00005013590	parn	94	89.028	ENSLBEG00000009167	parn	100	88.715	Labrus_bergylta
ENSMZEG00005013590	parn	85	73.767	ENSLACG00000004207	PARN	100	75.708	Latimeria_chalumnae
ENSMZEG00005013590	parn	93	80.144	ENSLOCG00000000715	parn	100	72.489	Lepisosteus_oculatus
ENSMZEG00005013590	parn	90	77.052	ENSLAFG00000015036	PARN	92	74.530	Loxodonta_africana
ENSMZEG00005013590	parn	90	72.560	ENSMFAG00000044852	PARN	89	77.966	Macaca_fascicularis
ENSMZEG00005013590	parn	90	77.425	ENSMMUG00000018849	PARN	89	77.966	Macaca_mulatta
ENSMZEG00005013590	parn	90	77.425	ENSMNEG00000045108	PARN	89	77.966	Macaca_nemestrina
ENSMZEG00005013590	parn	90	77.239	ENSMLEG00000031743	PARN	89	77.966	Mandrillus_leucophaeus
ENSMZEG00005013590	parn	100	89.374	ENSMAMG00000006939	parn	100	89.374	Mastacembelus_armatus
ENSMZEG00005013590	parn	94	72.598	ENSMGAG00000001004	PARN	90	72.396	Meleagris_gallopavo
ENSMZEG00005013590	parn	100	62.791	ENSMAUG00000008025	Parn	100	62.946	Mesocricetus_auratus
ENSMZEG00005013590	parn	69	30.822	ENSMAUG00000012298	Pnldc1	85	30.822	Mesocricetus_auratus
ENSMZEG00005013590	parn	95	73.509	ENSMICG00000016053	PARN	91	76.271	Microcebus_murinus
ENSMZEG00005013590	parn	84	76.861	ENSMOCG00000022211	Parn	100	79.192	Microtus_ochrogaster
ENSMZEG00005013590	parn	100	83.361	ENSMMOG00000011333	parn	100	83.361	Mola_mola
ENSMZEG00005013590	parn	84	78.357	ENSMODG00000004915	PARN	99	81.087	Monodelphis_domestica
ENSMZEG00005013590	parn	100	87.458	ENSMALG00000019426	parn	94	94.043	Monopterus_albus
ENSMZEG00005013590	parn	95	72.085	MGP_CAROLIEiJ_G0020466	Parn	91	72.241	Mus_caroli
ENSMZEG00005013590	parn	95	71.103	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSMZEG00005013590	parn	95	72.261	MGP_PahariEiJ_G0016172	Parn	91	73.010	Mus_pahari
ENSMZEG00005013590	parn	90	75.000	MGP_SPRETEiJ_G0021361	Parn	100	66.562	Mus_spretus
ENSMZEG00005013590	parn	98	72.556	ENSMPUG00000014464	PARN	90	74.740	Mustela_putorius_furo
ENSMZEG00005013590	parn	84	76.258	ENSMLUG00000005414	PARN	100	78.586	Myotis_lucifugus
ENSMZEG00005013590	parn	100	92.761	ENSNBRG00000006805	parn	100	92.761	Neolamprologus_brichardi
ENSMZEG00005013590	parn	90	77.239	ENSNLEG00000010241	PARN	91	77.966	Nomascus_leucogenys
ENSMZEG00005013590	parn	76	65.000	ENSMEUG00000008178	-	74	65.000	Notamacropus_eugenii
ENSMZEG00005013590	parn	89	71.645	ENSOPRG00000012187	PARN	92	69.191	Ochotona_princeps
ENSMZEG00005013590	parn	90	68.807	ENSODEG00000001617	PARN	100	62.145	Octodon_degus
ENSMZEG00005013590	parn	100	98.675	ENSONIG00000000151	parn	100	98.675	Oreochromis_niloticus
ENSMZEG00005013590	parn	51	77.850	ENSOANG00000020155	-	96	66.406	Ornithorhynchus_anatinus
ENSMZEG00005013590	parn	92	75.641	ENSOCUG00000000322	PARN	91	75.087	Oryctolagus_cuniculus
ENSMZEG00005013590	parn	100	81.672	ENSORLG00020010313	parn	100	81.618	Oryzias_latipes_hni
ENSMZEG00005013590	parn	100	81.378	ENSORLG00015000300	parn	100	81.324	Oryzias_latipes_hsok
ENSMZEG00005013590	parn	100	80.381	ENSOMEG00000019555	parn	100	80.234	Oryzias_melastigma
ENSMZEG00005013590	parn	84	76.506	ENSOGAG00000014626	PARN	100	79.032	Otolemur_garnettii
ENSMZEG00005013590	parn	84	77.465	ENSOARG00000007574	PARN	100	80.000	Ovis_aries
ENSMZEG00005013590	parn	90	77.239	ENSPPAG00000031438	PARN	91	77.966	Pan_paniscus
ENSMZEG00005013590	parn	98	72.727	ENSPPRG00000018583	PARN	87	76.271	Panthera_pardus
ENSMZEG00005013590	parn	98	72.727	ENSPTIG00000012135	PARN	87	76.271	Panthera_tigris_altaica
ENSMZEG00005013590	parn	90	77.239	ENSPTRG00000007792	PARN	91	77.966	Pan_troglodytes
ENSMZEG00005013590	parn	90	75.000	ENSPANG00000020099	PARN	89	77.966	Papio_anubis
ENSMZEG00005013590	parn	93	79.747	ENSPKIG00000022807	parn	90	76.256	Paramormyrops_kingsleyae
ENSMZEG00005013590	parn	95	74.386	ENSPSIG00000014804	PARN	91	74.872	Pelodiscus_sinensis
ENSMZEG00005013590	parn	94	82.143	ENSPMGG00000014431	parn	85	80.065	Periophthalmus_magnuspinnatus
ENSMZEG00005013590	parn	95	69.965	ENSPEMG00000018439	Parn	91	71.626	Peromyscus_maniculatus_bairdii
ENSMZEG00005013590	parn	88	67.562	ENSPMAG00000003956	parn	98	69.171	Petromyzon_marinus
ENSMZEG00005013590	parn	72	68.519	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSMZEG00005013590	parn	100	85.109	ENSPFOG00000012823	parn	100	84.672	Poecilia_formosa
ENSMZEG00005013590	parn	100	85.255	ENSPLAG00000006395	parn	100	84.818	Poecilia_latipinna
ENSMZEG00005013590	parn	100	85.255	ENSPMEG00000007711	parn	100	84.818	Poecilia_mexicana
ENSMZEG00005013590	parn	100	85.255	ENSPREG00000000147	parn	100	84.818	Poecilia_reticulata
ENSMZEG00005013590	parn	90	76.766	ENSPPYG00000007123	PARN	91	74.276	Pongo_abelii
ENSMZEG00005013590	parn	90	63.687	ENSPCAG00000001741	PARN	92	64.158	Procavia_capensis
ENSMZEG00005013590	parn	95	71.025	ENSPCOG00000019292	PARN	98	76.271	Propithecus_coquereli
ENSMZEG00005013590	parn	94	70.515	ENSPVAG00000002547	PARN	91	71.304	Pteropus_vampyrus
ENSMZEG00005013590	parn	100	99.264	ENSPNYG00000006835	parn	100	99.264	Pundamilia_nyererei
ENSMZEG00005013590	parn	93	72.370	ENSPNAG00000018905	parn	98	74.834	Pygocentrus_nattereri
ENSMZEG00005013590	parn	95	71.979	ENSRNOG00000002912	Parn	96	79.592	Rattus_norvegicus
ENSMZEG00005013590	parn	90	75.746	ENSSBOG00000034726	PARN	94	77.966	Saimiri_boliviensis_boliviensis
ENSMZEG00005013590	parn	71	76.429	ENSSHAG00000008493	PARN	93	79.665	Sarcophilus_harrisii
ENSMZEG00005013590	parn	92	80.220	ENSSFOG00015014165	parn	98	75.966	Scleropages_formosus
ENSMZEG00005013590	parn	100	83.691	ENSSMAG00000000685	parn	100	84.263	Scophthalmus_maximus
ENSMZEG00005013590	parn	100	90.247	ENSSDUG00000014555	parn	100	89.956	Seriola_dumerili
ENSMZEG00005013590	parn	74	78.261	ENSSARG00000014339	PARN	75	81.149	Sorex_araneus
ENSMZEG00005013590	parn	95	73.860	ENSSPUG00000007719	PARN	91	75.000	Sphenodon_punctatus
ENSMZEG00005013590	parn	100	89.589	ENSSPAG00000007095	parn	100	89.589	Stegastes_partitus
ENSMZEG00005013590	parn	98	72.213	ENSSSCG00000007878	PARN	80	74.394	Sus_scrofa
ENSMZEG00005013590	parn	94	74.113	ENSTGUG00000004971	PARN	91	74.144	Taeniopygia_guttata
ENSMZEG00005013590	parn	100	79.180	ENSTNIG00000008252	parn	99	83.736	Tetraodon_nigroviridis
ENSMZEG00005013590	parn	57	31.000	ENSTBEG00000009131	PNLDC1	67	31.000	Tupaia_belangeri
ENSMZEG00005013590	parn	80	63.900	ENSTBEG00000010407	PARN	90	62.928	Tupaia_belangeri
ENSMZEG00005013590	parn	94	68.917	ENSTTRG00000002843	PARN	91	69.655	Tursiops_truncatus
ENSMZEG00005013590	parn	74	68.315	ENSUAMG00000008283	PARN	94	68.192	Ursus_americanus
ENSMZEG00005013590	parn	95	73.509	ENSUMAG00000004527	PARN	89	73.509	Ursus_maritimus
ENSMZEG00005013590	parn	89	73.346	ENSVPAG00000008968	PARN	93	71.034	Vicugna_pacos
ENSMZEG00005013590	parn	98	72.384	ENSVVUG00000019509	PARN	90	74.611	Vulpes_vulpes
ENSMZEG00005013590	parn	90	73.606	ENSXETG00000010994	parn	100	76.894	Xenopus_tropicalis
ENSMZEG00005013590	parn	93	82.914	ENSXCOG00000015990	parn	99	84.007	Xiphophorus_couchianus
ENSMZEG00005013590	parn	100	83.772	ENSXMAG00000014783	parn	100	83.626	Xiphophorus_maculatus