EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005013634 (Gene tree)
Gene ID: 101480926
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 7373 bases
Position: chrLG12:13712849-13720221
Accession: 101480926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005018144	SMN	PF06003.12	2.1e-113	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005018733	-	1973	XM_004544359	ENSMZEP00005018144	279 (aa)	XP_004544416	UPI0003297358

Gene Model

Click here to download ENSMZEG00005013634's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005013634's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005013634	smn1	94	52.809	ENSG00000205571	SMN2	70	75.000	Homo_sapiens
ENSMZEG00005013634	smn1	94	52.809	ENSG00000172062	SMN1	92	51.923	Homo_sapiens
ENSMZEG00005013634	smn1	100	83.039	ENSAPOG00000011324	smn1	100	83.039	Acanthochromis_polyacanthus
ENSMZEG00005013634	smn1	94	54.909	ENSAMEG00000003316	-	89	50.542	Ailuropoda_melanoleuca
ENSMZEG00005013634	smn1	93	85.496	ENSACIG00000019772	-	99	85.496	Amphilophus_citrinellus
ENSMZEG00005013634	smn1	61	86.391	ENSACIG00000007598	smn1	94	86.982	Amphilophus_citrinellus
ENSMZEG00005013634	smn1	100	83.039	ENSAOCG00000024444	smn1	100	83.392	Amphiprion_ocellaris
ENSMZEG00005013634	smn1	100	83.392	ENSAPEG00000016504	smn1	100	83.746	Amphiprion_percula
ENSMZEG00005013634	smn1	95	84.074	ENSATEG00000002182	smn1	82	84.074	Anabas_testudineus
ENSMZEG00005013634	smn1	69	48.259	ENSAPLG00000010912	-	96	47.716	Anas_platyrhynchos
ENSMZEG00005013634	smn1	98	53.737	ENSACAG00000010017	-	96	53.025	Anolis_carolinensis
ENSMZEG00005013634	smn1	96	51.237	ENSANAG00000032133	-	95	53.103	Aotus_nancymaae
ENSMZEG00005013634	smn1	99	96.364	ENSACLG00000007308	smn1	94	96.364	Astatotilapia_calliptera
ENSMZEG00005013634	smn1	100	65.357	ENSAMXG00000013884	smn1	100	67.260	Astyanax_mexicanus
ENSMZEG00005013634	smn1	94	53.571	ENSBTAG00000005743	SMN2	93	49.064	Bos_taurus
ENSMZEG00005013634	smn1	94	54.307	ENSCJAG00000016290	-	91	55.311	Callithrix_jacchus
ENSMZEG00005013634	smn1	94	53.650	ENSCAFG00000007812	SMN	92	51.292	Canis_familiaris
ENSMZEG00005013634	smn1	94	53.650	ENSCAFG00020019229	-	86	51.292	Canis_lupus_dingo
ENSMZEG00005013634	smn1	94	52.593	ENSCHIG00000015559	-	91	52.045	Capra_hircus
ENSMZEG00005013634	smn1	94	54.182	ENSTSYG00000012058	-	93	52.060	Carlito_syrichta
ENSMZEG00005013634	smn1	77	48.889	ENSCAPG00000011021	-	88	46.535	Cavia_aperea
ENSMZEG00005013634	smn1	94	53.169	ENSCPOG00000012328	-	92	53.025	Cavia_porcellus
ENSMZEG00005013634	smn1	94	53.047	ENSCPOG00000036973	-	91	52.330	Cavia_porcellus
ENSMZEG00005013634	smn1	94	52.809	ENSCCAG00000018127	-	90	53.383	Cebus_capucinus
ENSMZEG00005013634	smn1	94	55.056	ENSCATG00000037002	-	92	54.231	Cercocebus_atys
ENSMZEG00005013634	smn1	94	51.648	ENSCLAG00000000284	-	91	48.708	Chinchilla_lanigera
ENSMZEG00005013634	smn1	94	54.513	ENSCSAG00000015688	-	91	53.333	Chlorocebus_sabaeus
ENSMZEG00005013634	smn1	62	83.333	ENSCHOG00000007346	-	100	49.802	Choloepus_hoffmanni
ENSMZEG00005013634	smn1	96	55.197	ENSCPBG00000010968	-	99	53.903	Chrysemys_picta_bellii
ENSMZEG00005013634	smn1	94	54.135	ENSCANG00000038242	-	93	54.198	Colobus_angolensis_palliatus
ENSMZEG00005013634	smn1	94	50.382	ENSCANG00000033324	-	94	48.410	Colobus_angolensis_palliatus
ENSMZEG00005013634	smn1	94	53.383	ENSCGRG00001017959	-	92	49.638	Cricetulus_griseus_chok1gshd
ENSMZEG00005013634	smn1	94	53.383	ENSCGRG00000007698	Smn1	92	49.638	Cricetulus_griseus_crigri
ENSMZEG00005013634	smn1	97	67.133	ENSCSEG00000015227	smn1	100	65.263	Cynoglossus_semilaevis
ENSMZEG00005013634	smn1	100	76.761	ENSCVAG00000007498	smn1	100	78.873	Cyprinodon_variegatus
ENSMZEG00005013634	smn1	100	63.066	ENSDARG00000018494	smn1	100	61.620	Danio_rerio
ENSMZEG00005013634	smn1	51	58.904	ENSDNOG00000045949	-	63	57.931	Dasypus_novemcinctus
ENSMZEG00005013634	smn1	82	49.793	ENSDNOG00000007283	-	97	45.494	Dasypus_novemcinctus
ENSMZEG00005013634	smn1	94	43.333	ENSDORG00000007082	Smn1	90	42.857	Dipodomys_ordii
ENSMZEG00005013634	smn1	54	48.718	ENSETEG00000001406	-	89	45.312	Echinops_telfairi
ENSMZEG00005013634	smn1	96	39.116	ENSEBUG00000011902	smn1	96	38.514	Eptatretus_burgeri
ENSMZEG00005013634	smn1	89	47.104	ENSEASG00005018000	-	90	45.098	Equus_asinus_asinus
ENSMZEG00005013634	smn1	94	52.190	ENSECAG00000015215	-	92	50.558	Equus_caballus
ENSMZEG00005013634	smn1	88	53.696	ENSEEUG00000015777	-	100	47.674	Erinaceus_europaeus
ENSMZEG00005013634	smn1	100	67.742	ENSELUG00000018067	smn1	100	67.742	Esox_lucius
ENSMZEG00005013634	smn1	94	55.431	ENSFCAG00000028292	SMN	92	52.727	Felis_catus
ENSMZEG00005013634	smn1	95	56.618	ENSFALG00000012320	-	95	54.135	Ficedula_albicollis
ENSMZEG00005013634	smn1	94	50.000	ENSFDAG00000017683	-	92	45.018	Fukomys_damarensis
ENSMZEG00005013634	smn1	97	79.348	ENSFHEG00000018508	smn1	100	78.986	Fundulus_heteroclitus
ENSMZEG00005013634	smn1	100	66.786	ENSGMOG00000017279	smn1	98	66.429	Gadus_morhua
ENSMZEG00005013634	smn1	95	51.460	ENSGALG00000002430	SMN	97	50.794	Gallus_gallus
ENSMZEG00005013634	smn1	100	80.919	ENSGAFG00000009501	smn1	100	80.919	Gambusia_affinis
ENSMZEG00005013634	smn1	100	81.362	ENSGACG00000010584	smn1	97	80.287	Gasterosteus_aculeatus
ENSMZEG00005013634	smn1	96	55.839	ENSGAGG00000011374	-	95	54.348	Gopherus_agassizii
ENSMZEG00005013634	smn1	97	38.384	ENSGAGG00000013639	-	92	37.129	Gopherus_agassizii
ENSMZEG00005013634	smn1	55	63.924	ENSGGOG00000026704	-	74	63.924	Gorilla_gorilla
ENSMZEG00005013634	smn1	91	52.896	ENSGGOG00000003872	-	93	53.876	Gorilla_gorilla
ENSMZEG00005013634	smn1	100	98.925	ENSHBUG00000013987	smn1	100	98.925	Haplochromis_burtoni
ENSMZEG00005013634	smn1	94	50.182	ENSHGLG00000001018	-	92	45.556	Heterocephalus_glaber_female
ENSMZEG00005013634	smn1	94	48.929	ENSHGLG00000001905	-	94	47.143	Heterocephalus_glaber_female
ENSMZEG00005013634	smn1	92	48.905	ENSHGLG00100018676	-	96	47.080	Heterocephalus_glaber_male
ENSMZEG00005013634	smn1	94	50.182	ENSHGLG00100011252	-	92	45.556	Heterocephalus_glaber_male
ENSMZEG00005013634	smn1	94	76.426	ENSHCOG00000017136	smn1	89	76.806	Hippocampus_comes
ENSMZEG00005013634	smn1	100	66.431	ENSIPUG00000012580	smn1	89	62.898	Ictalurus_punctatus
ENSMZEG00005013634	smn1	91	52.632	ENSSTOG00000012288	-	93	53.640	Ictidomys_tridecemlineatus
ENSMZEG00005013634	smn1	59	47.305	ENSJJAG00000014853	-	86	48.810	Jaculus_jaculus
ENSMZEG00005013634	smn1	100	78.947	ENSKMAG00000007239	smn1	100	78.947	Kryptolebias_marmoratus
ENSMZEG00005013634	smn1	100	81.690	ENSLBEG00000022550	smn1	100	81.690	Labrus_bergylta
ENSMZEG00005013634	smn1	99	32.343	ENSLACG00000009808	-	95	35.714	Latimeria_chalumnae
ENSMZEG00005013634	smn1	100	52.817	ENSLOCG00000011339	smn1	100	56.184	Lepisosteus_oculatus
ENSMZEG00005013634	smn1	97	31.071	ENSLOCG00000000801	-	94	30.824	Lepisosteus_oculatus
ENSMZEG00005013634	smn1	94	50.000	ENSLAFG00000003425	-	89	49.259	Loxodonta_africana
ENSMZEG00005013634	smn1	94	49.819	ENSMFAG00000008812	-	91	51.119	Macaca_fascicularis
ENSMZEG00005013634	smn1	94	55.805	ENSMFAG00000031523	SMN1	95	51.711	Macaca_fascicularis
ENSMZEG00005013634	smn1	94	55.805	ENSMMUG00000020214	SMN1	92	53.435	Macaca_mulatta
ENSMZEG00005013634	smn1	94	49.097	ENSMMUG00000030594	-	91	48.905	Macaca_mulatta
ENSMZEG00005013634	smn1	76	41.410	ENSMNEG00000036423	-	81	40.865	Macaca_nemestrina
ENSMZEG00005013634	smn1	94	55.805	ENSMNEG00000035094	-	92	53.435	Macaca_nemestrina
ENSMZEG00005013634	smn1	94	55.805	ENSMLEG00000041902	-	93	53.435	Mandrillus_leucophaeus
ENSMZEG00005013634	smn1	100	82.746	ENSMAMG00000011034	smn1	100	83.451	Mastacembelus_armatus
ENSMZEG00005013634	smn1	69	51.295	ENSMGAG00000008889	-	95	46.875	Meleagris_gallopavo
ENSMZEG00005013634	smn1	54	60.390	ENSMAUG00000010262	Smn1	92	48.913	Mesocricetus_auratus
ENSMZEG00005013634	smn1	55	62.658	ENSMICG00000034708	-	71	62.658	Microcebus_murinus
ENSMZEG00005013634	smn1	94	54.887	ENSMOCG00000017833	Smn1	92	51.698	Microtus_ochrogaster
ENSMZEG00005013634	smn1	96	70.741	ENSMMOG00000005504	smn1	98	70.370	Mola_mola
ENSMZEG00005013634	smn1	97	54.093	ENSMODG00000001436	-	95	50.175	Monodelphis_domestica
ENSMZEG00005013634	smn1	100	83.803	ENSMALG00000008025	smn1	100	83.803	Monopterus_albus
ENSMZEG00005013634	smn1	94	52.174	MGP_CAROLIEiJ_G0018836	Smn1	92	50.000	Mus_caroli
ENSMZEG00005013634	smn1	94	51.812	ENSMUSG00000021645	Smn1	92	49.638	Mus_musculus
ENSMZEG00005013634	smn1	94	52.518	MGP_PahariEiJ_G0015911	Smn1	92	49.635	Mus_pahari
ENSMZEG00005013634	smn1	94	52.899	MGP_SPRETEiJ_G0019718	Smn1	92	49.275	Mus_spretus
ENSMZEG00005013634	smn1	92	54.044	ENSMPUG00000014470	-	93	50.936	Mustela_putorius_furo
ENSMZEG00005013634	smn1	94	51.056	ENSMLUG00000010603	-	50	62.179	Myotis_lucifugus
ENSMZEG00005013634	smn1	94	52.555	ENSNGAG00000019833	Smn1	92	52.612	Nannospalax_galili
ENSMZEG00005013634	smn1	100	97.872	ENSNBRG00000023000	smn1	100	97.872	Neolamprologus_brichardi
ENSMZEG00005013634	smn1	94	52.612	ENSNLEG00000004454	-	92	51.923	Nomascus_leucogenys
ENSMZEG00005013634	smn1	67	53.608	ENSMEUG00000011393	-	88	48.780	Notamacropus_eugenii
ENSMZEG00005013634	smn1	88	52.490	ENSOPRG00000002015	-	100	53.150	Ochotona_princeps
ENSMZEG00005013634	smn1	91	53.462	ENSODEG00000015976	-	91	53.846	Octodon_degus
ENSMZEG00005013634	smn1	100	96.454	ENSONIG00000011799	smn1	100	96.454	Oreochromis_niloticus
ENSMZEG00005013634	smn1	95	52.158	ENSOANG00000001626	-	95	52.788	Ornithorhynchus_anatinus
ENSMZEG00005013634	smn1	94	52.878	ENSOCUG00000017097	-	91	49.296	Oryctolagus_cuniculus
ENSMZEG00005013634	smn1	94	43.116	ENSOCUG00000025183	-	92	40.364	Oryctolagus_cuniculus
ENSMZEG00005013634	smn1	94	51.056	ENSOCUG00000026649	-	92	49.296	Oryctolagus_cuniculus
ENSMZEG00005013634	smn1	100	78.799	ENSORLG00000010552	smn1	100	79.505	Oryzias_latipes
ENSMZEG00005013634	smn1	100	72.535	ENSORLG00020007936	smn1	100	73.239	Oryzias_latipes_hni
ENSMZEG00005013634	smn1	100	78.445	ENSORLG00015022425	smn1	100	79.152	Oryzias_latipes_hsok
ENSMZEG00005013634	smn1	100	79.152	ENSOMEG00000007824	smn1	100	79.859	Oryzias_melastigma
ENSMZEG00005013634	smn1	91	47.191	ENSOGAG00000031414	-	92	45.985	Otolemur_garnettii
ENSMZEG00005013634	smn1	94	51.812	ENSOARG00000005425	-	97	47.191	Ovis_aries
ENSMZEG00005013634	smn1	94	52.809	ENSPPAG00000036640	-	92	51.923	Pan_paniscus
ENSMZEG00005013634	smn1	94	55.431	ENSPPRG00000005575	-	92	52.727	Panthera_pardus
ENSMZEG00005013634	smn1	94	55.431	ENSPTIG00000007745	-	92	52.364	Panthera_tigris_altaica
ENSMZEG00005013634	smn1	94	53.480	ENSPTRG00000016955	-	92	53.480	Pan_troglodytes
ENSMZEG00005013634	smn1	94	50.752	ENSPANG00000000253	-	91	51.493	Papio_anubis
ENSMZEG00005013634	smn1	94	55.805	ENSPANG00000013601	-	90	54.511	Papio_anubis
ENSMZEG00005013634	smn1	100	59.582	ENSPKIG00000011096	smn1	100	60.211	Paramormyrops_kingsleyae
ENSMZEG00005013634	smn1	92	53.933	ENSPSIG00000014787	-	86	54.444	Pelodiscus_sinensis
ENSMZEG00005013634	smn1	100	71.378	ENSPMGG00000012285	smn1	97	73.432	Periophthalmus_magnuspinnatus
ENSMZEG00005013634	smn1	91	40.755	ENSPMAG00000005004	smn1	91	37.132	Petromyzon_marinus
ENSMZEG00005013634	smn1	97	54.448	ENSPCIG00000025764	-	96	50.352	Phascolarctos_cinereus
ENSMZEG00005013634	smn1	100	80.919	ENSPFOG00000007786	smn1	100	80.919	Poecilia_formosa
ENSMZEG00005013634	smn1	100	81.272	ENSPLAG00000012071	smn1	100	81.272	Poecilia_latipinna
ENSMZEG00005013634	smn1	100	80.919	ENSPMEG00000017085	smn1	100	80.919	Poecilia_mexicana
ENSMZEG00005013634	smn1	100	80.565	ENSPREG00000005824	smn1	100	80.565	Poecilia_reticulata
ENSMZEG00005013634	smn1	91	51.111	ENSPPYG00000015533	-	95	50.192	Pongo_abelii
ENSMZEG00005013634	smn1	60	76.923	ENSPPYG00000019189	-	74	49.655	Pongo_abelii
ENSMZEG00005013634	smn1	91	52.874	ENSPCAG00000004187	-	97	51.341	Procavia_capensis
ENSMZEG00005013634	smn1	62	53.933	ENSPCOG00000022307	-	65	59.722	Propithecus_coquereli
ENSMZEG00005013634	smn1	94	53.430	ENSPVAG00000005977	-	91	52.030	Pteropus_vampyrus
ENSMZEG00005013634	smn1	100	97.872	ENSPNYG00000014148	smn1	100	97.872	Pundamilia_nyererei
ENSMZEG00005013634	smn1	100	68.085	ENSPNAG00000014007	smn1	87	62.633	Pygocentrus_nattereri
ENSMZEG00005013634	smn1	94	51.812	ENSRNOG00000018067	Smn1	92	50.187	Rattus_norvegicus
ENSMZEG00005013634	smn1	97	50.538	ENSRBIG00000036775	-	93	51.636	Rhinopithecus_bieti
ENSMZEG00005013634	smn1	94	54.135	ENSRBIG00000037052	-	90	54.511	Rhinopithecus_bieti
ENSMZEG00005013634	smn1	94	54.135	ENSRROG00000039399	-	92	53.435	Rhinopithecus_roxellana
ENSMZEG00005013634	smn1	94	52.830	ENSRROG00000031088	-	90	53.125	Rhinopithecus_roxellana
ENSMZEG00005013634	smn1	62	54.802	ENSSBOG00000020112	-	52	60.667	Saimiri_boliviensis_boliviensis
ENSMZEG00005013634	smn1	94	55.474	ENSSBOG00000011665	-	91	54.909	Saimiri_boliviensis_boliviensis
ENSMZEG00005013634	smn1	97	54.122	ENSSHAG00000001499	-	97	48.889	Sarcophilus_harrisii
ENSMZEG00005013634	smn1	100	59.091	ENSSFOG00015015507	smn1	100	55.903	Scleropages_formosus
ENSMZEG00005013634	smn1	100	76.678	ENSSMAG00000007922	smn1	100	79.505	Scophthalmus_maximus
ENSMZEG00005013634	smn1	100	86.620	ENSSDUG00000018533	smn1	100	86.620	Seriola_dumerili
ENSMZEG00005013634	smn1	100	86.972	ENSSLDG00000021135	smn1	100	86.972	Seriola_lalandi_dorsalis
ENSMZEG00005013634	smn1	97	58.042	ENSSPUG00000000373	-	99	55.789	Sphenodon_punctatus
ENSMZEG00005013634	smn1	100	84.099	ENSSPAG00000004345	smn1	100	83.746	Stegastes_partitus
ENSMZEG00005013634	smn1	58	62.500	ENSSSCG00000029127	-	74	71.875	Sus_scrofa
ENSMZEG00005013634	smn1	94	53.791	ENSSSCG00000016970	-	91	52.030	Sus_scrofa
ENSMZEG00005013634	smn1	91	52.963	ENSTGUG00000001548	-	95	50.376	Taeniopygia_guttata
ENSMZEG00005013634	smn1	100	71.986	ENSTRUG00000000736	smn	100	71.277	Takifugu_rubripes
ENSMZEG00005013634	smn1	100	68.403	ENSTNIG00000009892	smn1	100	68.403	Tetraodon_nigroviridis
ENSMZEG00005013634	smn1	55	63.694	ENSTBEG00000002399	-	86	58.659	Tupaia_belangeri
ENSMZEG00005013634	smn1	54	63.462	ENSTTRG00000005080	-	54	63.462	Tursiops_truncatus
ENSMZEG00005013634	smn1	54	64.744	ENSUAMG00000024947	-	57	64.744	Ursus_americanus
ENSMZEG00005013634	smn1	94	55.636	ENSUMAG00000007842	-	69	52.030	Ursus_maritimus
ENSMZEG00005013634	smn1	61	81.481	ENSVPAG00000009887	-	61	86.957	Vicugna_pacos
ENSMZEG00005013634	smn1	94	53.650	ENSVVUG00000006934	-	92	51.292	Vulpes_vulpes
ENSMZEG00005013634	smn1	87	34.483	ENSXETG00000004912	-	82	57.627	Xenopus_tropicalis
ENSMZEG00005013634	smn1	98	56.584	ENSXETG00000018189	smn2	95	53.546	Xenopus_tropicalis
ENSMZEG00005013634	smn1	100	80.212	ENSXMAG00000001521	smn1	100	79.859	Xiphophorus_maculatus