EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005013783 (Gene tree)
Gene ID: 101478125
Gene Symbol: -
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 13976 bases
Position: chrLG12:26982146-26996121
Accession: 101478125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005018387	RNase_T	PF00929.24	1e-05	1	1
ENSMZEP00005018364	RNase_T	PF00929.24	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005018981	-	2811	-	ENSMZEP00005018387	936 (aa)	-	-
ENSMZET00005018954	-	4350	XM_004575646	ENSMZEP00005018364	1160 (aa)	XP_004575703	UPI000D31FEC0

Gene Model

Click here to download ENSMZEG00005013783's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005013783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005013783	-	87	68.070	ENSAPOG00000005095	zgc:152968	99	79.075	Acanthochromis_polyacanthus
ENSMZEG00005013783	-	100	73.640	ENSACIG00000002527	zgc:152968	98	84.412	Amphilophus_citrinellus
ENSMZEG00005013783	-	98	78.345	ENSAOCG00000018049	-	99	74.634	Amphiprion_ocellaris
ENSMZEG00005013783	-	91	79.024	ENSAPEG00000012559	zgc:152968	82	79.024	Amphiprion_percula
ENSMZEG00005013783	-	100	99.397	ENSACLG00000020524	-	100	99.397	Astatotilapia_calliptera
ENSMZEG00005013783	-	79	79.156	ENSCVAG00000015400	zgc:152968	99	79.156	Cyprinodon_variegatus
ENSMZEG00005013783	-	71	62.774	ENSDARG00000037002	zgc:152968	70	50.994	Danio_rerio
ENSMZEG00005013783	-	73	54.692	ENSELUG00000014272	zgc:152968	77	53.428	Esox_lucius
ENSMZEG00005013783	-	70	76.773	ENSFHEG00000003641	-	97	70.874	Fundulus_heteroclitus
ENSMZEG00005013783	-	98	78.676	ENSGAFG00000016810	-	93	75.391	Gambusia_affinis
ENSMZEG00005013783	-	98	98.589	ENSHBUG00000007524	-	98	98.589	Haplochromis_burtoni
ENSMZEG00005013783	-	74	60.852	ENSIPUG00000004633	zgc:152968	81	60.241	Ictalurus_punctatus
ENSMZEG00005013783	-	86	71.347	ENSLBEG00000026485	zgc:152968	99	71.347	Labrus_bergylta
ENSMZEG00005013783	-	100	71.429	ENSMAMG00000005920	-	88	71.429	Mastacembelus_armatus
ENSMZEG00005013783	-	91	79.268	ENSMMOG00000018072	zgc:152968	98	81.463	Mola_mola
ENSMZEG00005013783	-	86	70.286	ENSMALG00000003536	-	98	70.286	Monopterus_albus
ENSMZEG00005013783	-	100	92.361	ENSONIG00000016897	-	100	92.361	Oreochromis_niloticus
ENSMZEG00005013783	-	68	75.123	ENSORLG00020012504	-	81	66.195	Oryzias_latipes_hni
ENSMZEG00005013783	-	65	74.631	ENSOMEG00000008840	-	87	74.631	Oryzias_melastigma
ENSMZEG00005013783	-	100	78.832	ENSPFOG00000006104	-	90	78.832	Poecilia_formosa
ENSMZEG00005013783	-	80	77.672	ENSPLAG00000005034	-	98	77.672	Poecilia_latipinna
ENSMZEG00005013783	-	97	79.167	ENSPMEG00000018012	-	80	79.167	Poecilia_mexicana
ENSMZEG00005013783	-	97	78.922	ENSPREG00000007481	-	99	71.394	Poecilia_reticulata
ENSMZEG00005013783	-	50	60.656	ENSSFOG00015023869	zgc:152968	62	61.893	Scleropages_formosus
ENSMZEG00005013783	-	100	79.268	ENSSMAG00000008149	-	83	79.268	Scophthalmus_maximus
ENSMZEG00005013783	-	98	80.976	ENSSDUG00000022323	-	98	82.195	Seriola_dumerili
ENSMZEG00005013783	-	93	79.669	ENSSLDG00000018799	zgc:152968	97	81.553	Seriola_lalandi_dorsalis
ENSMZEG00005013783	-	92	79.854	ENSSPAG00000007632	-	98	72.727	Stegastes_partitus
ENSMZEG00005013783	-	98	73.902	ENSTRUG00000025441	zgc:152968	100	54.744	Takifugu_rubripes
ENSMZEG00005013783	-	96	77.995	ENSXMAG00000026483	-	79	77.995	Xiphophorus_maculatus