EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005014187 (Gene tree)
Gene ID: 101472544
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 7675 bases
Position: chrLG17:3871646-3879320
Accession: 101472544
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005018907	Exo_endo_phos	PF03372.23	4.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005019513	-	5567	XM_004573955	ENSMZEP00005018907	310 (aa)	XP_004574012	UPI00032A0A15

Gene Model

Click here to download ENSMZEG00005014187's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005014187's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005014187	apex1	99	66.038	ENSG00000100823	APEX1	99	59.064	Homo_sapiens
ENSMZEG00005014187	apex1	100	88.387	ENSAPOG00000017002	apex1	97	90.169	Acanthochromis_polyacanthus
ENSMZEG00005014187	apex1	99	66.139	ENSAMEG00000005418	APEX1	87	71.014	Ailuropoda_melanoleuca
ENSMZEG00005014187	apex1	89	94.224	ENSACIG00000010653	apex1	93	94.182	Amphilophus_citrinellus
ENSMZEG00005014187	apex1	100	89.355	ENSAOCG00000009649	apex1	89	92.000	Amphiprion_ocellaris
ENSMZEG00005014187	apex1	100	89.677	ENSAPEG00000021453	apex1	89	92.364	Amphiprion_percula
ENSMZEG00005014187	apex1	99	91.909	ENSATEG00000002883	apex1	97	91.909	Anabas_testudineus
ENSMZEG00005014187	apex1	99	70.159	ENSACAG00000008099	APEX1	87	74.909	Anolis_carolinensis
ENSMZEG00005014187	apex1	99	67.089	ENSANAG00000030117	APEX1	86	72.364	Aotus_nancymaae
ENSMZEG00005014187	apex1	100	100.000	ENSACLG00000018441	apex1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005014187	apex1	99	87.419	ENSAMXG00000034699	apex1	88	90.909	Astyanax_mexicanus
ENSMZEG00005014187	apex1	99	65.823	ENSBTAG00000002745	APEX1	87	70.290	Bos_taurus
ENSMZEG00005014187	apex1	98	43.137	WBGene00001372	exo-3	92	44.944	Caenorhabditis_elegans
ENSMZEG00005014187	apex1	99	67.089	ENSCJAG00000009726	APEX1	86	72.364	Callithrix_jacchus
ENSMZEG00005014187	apex1	99	66.456	ENSCAFG00000032033	APEX1	86	71.636	Canis_familiaris
ENSMZEG00005014187	apex1	99	66.456	ENSCAFG00020014377	-	86	71.636	Canis_lupus_dingo
ENSMZEG00005014187	apex1	53	59.412	ENSCAFG00020023002	-	72	68.217	Canis_lupus_dingo
ENSMZEG00005014187	apex1	87	57.196	ENSCHIG00000014537	-	86	57.196	Capra_hircus
ENSMZEG00005014187	apex1	99	65.823	ENSCHIG00000007298	-	87	70.290	Capra_hircus
ENSMZEG00005014187	apex1	99	65.190	ENSTSYG00000034813	APEX1	87	69.928	Carlito_syrichta
ENSMZEG00005014187	apex1	87	66.058	ENSCAPG00000016235	APEX1	91	72.458	Cavia_aperea
ENSMZEG00005014187	apex1	99	67.722	ENSCPOG00000030909	APEX1	86	72.727	Cavia_porcellus
ENSMZEG00005014187	apex1	99	67.089	ENSCCAG00000033056	-	86	72.364	Cebus_capucinus
ENSMZEG00005014187	apex1	99	57.595	ENSCCAG00000031931	-	86	61.818	Cebus_capucinus
ENSMZEG00005014187	apex1	99	67.089	ENSCATG00000015580	APEX1	86	71.636	Cercocebus_atys
ENSMZEG00005014187	apex1	99	66.772	ENSCLAG00000001002	APEX1	87	71.739	Chinchilla_lanigera
ENSMZEG00005014187	apex1	99	67.405	ENSCSAG00000016670	-	86	72.000	Chlorocebus_sabaeus
ENSMZEG00005014187	apex1	99	67.405	ENSCSAG00000016685	-	86	72.000	Chlorocebus_sabaeus
ENSMZEG00005014187	apex1	99	71.203	ENSCPBG00000009567	APEX1	86	76.727	Chrysemys_picta_bellii
ENSMZEG00005014187	apex1	99	55.556	ENSCING00000008137	-	85	59.925	Ciona_intestinalis
ENSMZEG00005014187	apex1	96	49.671	ENSCSAVG00000007144	-	100	55.039	Ciona_savignyi
ENSMZEG00005014187	apex1	99	66.772	ENSCANG00000030726	APEX1	86	72.000	Colobus_angolensis_palliatus
ENSMZEG00005014187	apex1	99	65.615	ENSCGRG00001017046	Apex1	87	70.290	Cricetulus_griseus_chok1gshd
ENSMZEG00005014187	apex1	99	65.615	ENSCGRG00000008984	Apex1	87	70.290	Cricetulus_griseus_crigri
ENSMZEG00005014187	apex1	100	88.710	ENSCSEG00000017499	apex1	99	88.710	Cynoglossus_semilaevis
ENSMZEG00005014187	apex1	100	91.935	ENSCVAG00000022075	apex1	100	91.935	Cyprinodon_variegatus
ENSMZEG00005014187	apex1	99	85.761	ENSDARG00000045843	apex1	91	87.619	Danio_rerio
ENSMZEG00005014187	apex1	99	62.975	ENSDNOG00000042234	APEX1	82	67.754	Dasypus_novemcinctus
ENSMZEG00005014187	apex1	99	65.823	ENSDORG00000001616	Apex1	87	70.652	Dipodomys_ordii
ENSMZEG00005014187	apex1	99	66.772	ENSETEG00000004855	-	86	71.636	Echinops_telfairi
ENSMZEG00005014187	apex1	76	60.504	ENSEBUG00000000622	-	92	60.504	Eptatretus_burgeri
ENSMZEG00005014187	apex1	99	66.246	ENSEASG00005017489	APEX1	64	71.377	Equus_asinus_asinus
ENSMZEG00005014187	apex1	99	66.246	ENSECAG00000022325	APEX1	71	71.377	Equus_caballus
ENSMZEG00005014187	apex1	86	70.632	ENSEEUG00000012569	APEX1	92	70.677	Erinaceus_europaeus
ENSMZEG00005014187	apex1	99	82.258	ENSELUG00000021706	apex1	88	87.636	Esox_lucius
ENSMZEG00005014187	apex1	99	66.772	ENSFCAG00000030869	APEX1	87	71.739	Felis_catus
ENSMZEG00005014187	apex1	99	67.089	ENSFDAG00000006120	APEX1	87	72.101	Fukomys_damarensis
ENSMZEG00005014187	apex1	100	91.613	ENSFHEG00000009031	apex1	83	91.613	Fundulus_heteroclitus
ENSMZEG00005014187	apex1	100	77.492	ENSGMOG00000007943	apex1	88	79.636	Gadus_morhua
ENSMZEG00005014187	apex1	100	91.613	ENSGAFG00000005311	apex1	100	91.613	Gambusia_affinis
ENSMZEG00005014187	apex1	100	89.355	ENSGACG00000019497	apex1	99	90.977	Gasterosteus_aculeatus
ENSMZEG00005014187	apex1	99	71.203	ENSGAGG00000014999	APEX1	86	76.727	Gopherus_agassizii
ENSMZEG00005014187	apex1	99	65.723	ENSGGOG00000002128	APEX1	86	71.636	Gorilla_gorilla
ENSMZEG00005014187	apex1	100	99.032	ENSHBUG00000005894	apex1	100	99.032	Haplochromis_burtoni
ENSMZEG00005014187	apex1	99	66.772	ENSHGLG00000002848	APEX1	87	72.101	Heterocephalus_glaber_female
ENSMZEG00005014187	apex1	99	66.772	ENSHGLG00100017878	APEX1	87	72.101	Heterocephalus_glaber_male
ENSMZEG00005014187	apex1	100	87.460	ENSHCOG00000009961	apex1	88	89.818	Hippocampus_comes
ENSMZEG00005014187	apex1	99	84.839	ENSIPUG00000005799	apex1	88	88.000	Ictalurus_punctatus
ENSMZEG00005014187	apex1	99	67.089	ENSSTOG00000010096	APEX1	87	72.101	Ictidomys_tridecemlineatus
ENSMZEG00005014187	apex1	90	62.007	ENSJJAG00000020465	-	89	61.957	Jaculus_jaculus
ENSMZEG00005014187	apex1	99	65.506	ENSJJAG00000012067	-	87	70.290	Jaculus_jaculus
ENSMZEG00005014187	apex1	99	59.177	ENSJJAG00000003660	-	87	62.319	Jaculus_jaculus
ENSMZEG00005014187	apex1	100	91.290	ENSKMAG00000021171	apex1	100	91.290	Kryptolebias_marmoratus
ENSMZEG00005014187	apex1	100	89.355	ENSLBEG00000010248	apex1	100	89.355	Labrus_bergylta
ENSMZEG00005014187	apex1	99	73.077	ENSLACG00000008617	APEX1	87	78.832	Latimeria_chalumnae
ENSMZEG00005014187	apex1	99	78.594	ENSLOCG00000015516	apex1	87	82.545	Lepisosteus_oculatus
ENSMZEG00005014187	apex1	99	66.772	ENSLAFG00000021872	APEX1	86	72.000	Loxodonta_africana
ENSMZEG00005014187	apex1	99	66.456	ENSMFAG00000002565	APEX1	86	71.636	Macaca_fascicularis
ENSMZEG00005014187	apex1	99	66.456	ENSMMUG00000048039	APEX1	86	71.636	Macaca_mulatta
ENSMZEG00005014187	apex1	99	66.562	ENSMNEG00000036944	APEX1	86	71.636	Macaca_nemestrina
ENSMZEG00005014187	apex1	99	67.089	ENSMLEG00000042125	APEX1	86	71.636	Mandrillus_leucophaeus
ENSMZEG00005014187	apex1	100	91.290	ENSMAMG00000023526	apex1	100	91.290	Mastacembelus_armatus
ENSMZEG00005014187	apex1	99	65.823	ENSMAUG00000013994	Apex1	87	69.928	Mesocricetus_auratus
ENSMZEG00005014187	apex1	99	65.300	ENSMICG00000043554	APEX1	87	70.290	Microcebus_murinus
ENSMZEG00005014187	apex1	99	66.667	ENSMOCG00000013721	Apex1	87	71.377	Microtus_ochrogaster
ENSMZEG00005014187	apex1	100	87.781	ENSMMOG00000010031	apex1	86	90.217	Mola_mola
ENSMZEG00005014187	apex1	91	68.198	ENSMODG00000007125	APEX1	86	69.455	Monodelphis_domestica
ENSMZEG00005014187	apex1	90	84.286	ENSMALG00000011699	apex1	74	84.000	Monopterus_albus
ENSMZEG00005014187	apex1	99	67.516	MGP_CAROLIEiJ_G0019209	Apex1	87	72.000	Mus_caroli
ENSMZEG00005014187	apex1	99	67.302	ENSMUSG00000035960	Apex1	87	71.739	Mus_musculus
ENSMZEG00005014187	apex1	99	67.619	MGP_PahariEiJ_G0030232	Apex1	87	72.000	Mus_pahari
ENSMZEG00005014187	apex1	99	67.302	MGP_SPRETEiJ_G0020101	Apex1	87	71.739	Mus_spretus
ENSMZEG00005014187	apex1	99	64.780	ENSMLUG00000028957	APEX1	86	70.652	Myotis_lucifugus
ENSMZEG00005014187	apex1	87	53.791	ENSNGAG00000021748	-	71	57.806	Nannospalax_galili
ENSMZEG00005014187	apex1	99	65.823	ENSNGAG00000002725	-	87	71.377	Nannospalax_galili
ENSMZEG00005014187	apex1	100	99.355	ENSNBRG00000005334	apex1	91	99.355	Neolamprologus_brichardi
ENSMZEG00005014187	apex1	99	65.723	ENSNLEG00000010839	APEX1	88	71.636	Nomascus_leucogenys
ENSMZEG00005014187	apex1	99	65.495	ENSMEUG00000014519	APEX1	87	69.343	Notamacropus_eugenii
ENSMZEG00005014187	apex1	99	66.139	ENSOPRG00000014029	APEX1	87	69.928	Ochotona_princeps
ENSMZEG00005014187	apex1	95	52.881	ENSODEG00000004777	-	83	58.730	Octodon_degus
ENSMZEG00005014187	apex1	99	52.174	ENSODEG00000006583	-	86	55.319	Octodon_degus
ENSMZEG00005014187	apex1	99	66.772	ENSODEG00000001703	-	87	71.739	Octodon_degus
ENSMZEG00005014187	apex1	100	99.355	ENSONIG00000012089	apex1	100	99.355	Oreochromis_niloticus
ENSMZEG00005014187	apex1	88	70.182	ENSOANG00000008836	APEX1	68	70.182	Ornithorhynchus_anatinus
ENSMZEG00005014187	apex1	99	66.772	ENSOCUG00000005022	APEX1	87	71.377	Oryctolagus_cuniculus
ENSMZEG00005014187	apex1	100	89.711	ENSORLG00000012378	apex1	88	92.000	Oryzias_latipes
ENSMZEG00005014187	apex1	100	89.711	ENSORLG00020021371	apex1	88	92.000	Oryzias_latipes_hni
ENSMZEG00005014187	apex1	100	89.711	ENSORLG00015020089	apex1	88	92.000	Oryzias_latipes_hsok
ENSMZEG00005014187	apex1	100	90.675	ENSOMEG00000018876	apex1	88	92.727	Oryzias_melastigma
ENSMZEG00005014187	apex1	90	63.082	ENSOGAG00000029355	-	87	63.043	Otolemur_garnettii
ENSMZEG00005014187	apex1	99	66.456	ENSOGAG00000013335	-	87	71.377	Otolemur_garnettii
ENSMZEG00005014187	apex1	96	63.072	ENSOARG00000001876	-	86	67.293	Ovis_aries
ENSMZEG00005014187	apex1	99	66.139	ENSOARG00000019740	-	87	70.652	Ovis_aries
ENSMZEG00005014187	apex1	96	55.960	ENSOARG00000014424	-	88	58.696	Ovis_aries
ENSMZEG00005014187	apex1	99	66.038	ENSPPAG00000038760	APEX1	88	72.000	Pan_paniscus
ENSMZEG00005014187	apex1	99	66.772	ENSPPRG00000011794	APEX1	87	71.739	Panthera_pardus
ENSMZEG00005014187	apex1	99	66.772	ENSPTIG00000014829	APEX1	87	71.739	Panthera_tigris_altaica
ENSMZEG00005014187	apex1	99	66.038	ENSPTRG00000006093	APEX1	88	72.000	Pan_troglodytes
ENSMZEG00005014187	apex1	99	67.089	ENSPANG00000022757	APEX1	86	71.636	Papio_anubis
ENSMZEG00005014187	apex1	89	87.319	ENSPKIG00000003504	apex1	88	87.273	Paramormyrops_kingsleyae
ENSMZEG00005014187	apex1	88	77.656	ENSPMGG00000016596	apex1	80	77.656	Periophthalmus_magnuspinnatus
ENSMZEG00005014187	apex1	99	66.246	ENSPEMG00000019097	Apex1	87	70.652	Peromyscus_maniculatus_bairdii
ENSMZEG00005014187	apex1	92	72.474	ENSPMAG00000007275	-	93	73.818	Petromyzon_marinus
ENSMZEG00005014187	apex1	90	68.459	ENSPCIG00000023274	APEX1	86	69.343	Phascolarctos_cinereus
ENSMZEG00005014187	apex1	100	90.968	ENSPFOG00000004178	apex1	100	90.968	Poecilia_formosa
ENSMZEG00005014187	apex1	100	91.290	ENSPLAG00000012779	apex1	100	91.290	Poecilia_latipinna
ENSMZEG00005014187	apex1	100	90.968	ENSPMEG00000019623	apex1	100	90.968	Poecilia_mexicana
ENSMZEG00005014187	apex1	100	90.000	ENSPREG00000014298	apex1	99	90.000	Poecilia_reticulata
ENSMZEG00005014187	apex1	99	65.723	ENSPPYG00000005565	APEX1	86	71.636	Pongo_abelii
ENSMZEG00005014187	apex1	99	65.300	ENSPCAG00000010376	APEX1	86	70.182	Procavia_capensis
ENSMZEG00005014187	apex1	99	65.615	ENSPCOG00000021564	APEX1	87	70.652	Propithecus_coquereli
ENSMZEG00005014187	apex1	99	65.723	ENSPVAG00000010736	APEX1	86	71.273	Pteropus_vampyrus
ENSMZEG00005014187	apex1	100	99.677	ENSPNYG00000023940	apex1	100	99.677	Pundamilia_nyererei
ENSMZEG00005014187	apex1	92	86.014	ENSPNAG00000020897	apex1	84	90.837	Pygocentrus_nattereri
ENSMZEG00005014187	apex1	99	66.667	ENSRNOG00000009663	Apex1	87	71.377	Rattus_norvegicus
ENSMZEG00005014187	apex1	99	67.405	ENSRBIG00000038325	APEX1	85	72.000	Rhinopithecus_bieti
ENSMZEG00005014187	apex1	99	67.089	ENSSBOG00000018921	-	86	72.364	Saimiri_boliviensis_boliviensis
ENSMZEG00005014187	apex1	99	60.000	ENSSBOG00000031372	-	89	63.273	Saimiri_boliviensis_boliviensis
ENSMZEG00005014187	apex1	100	62.739	ENSSHAG00000013524	APEX1	85	68.592	Sarcophilus_harrisii
ENSMZEG00005014187	apex1	99	82.848	ENSSFOG00015001948	apex1	89	86.545	Scleropages_formosus
ENSMZEG00005014187	apex1	100	87.302	ENSSMAG00000013348	apex1	87	90.545	Scophthalmus_maximus
ENSMZEG00005014187	apex1	100	90.323	ENSSDUG00000016377	apex1	99	90.323	Seriola_dumerili
ENSMZEG00005014187	apex1	100	90.000	ENSSLDG00000023005	apex1	100	90.000	Seriola_lalandi_dorsalis
ENSMZEG00005014187	apex1	90	73.214	ENSSPUG00000000531	APEX1	93	73.723	Sphenodon_punctatus
ENSMZEG00005014187	apex1	100	89.032	ENSSPAG00000000458	apex1	100	89.032	Stegastes_partitus
ENSMZEG00005014187	apex1	95	40.264	ENSSSCG00000039705	-	89	42.238	Sus_scrofa
ENSMZEG00005014187	apex1	99	66.981	ENSSSCG00000040060	-	87	71.377	Sus_scrofa
ENSMZEG00005014187	apex1	76	59.149	ENSTGUG00000014378	APEX1	100	59.149	Taeniopygia_guttata
ENSMZEG00005014187	apex1	100	85.304	ENSTRUG00000004268	apex1	83	89.091	Takifugu_rubripes
ENSMZEG00005014187	apex1	100	85.161	ENSTNIG00000005778	apex1	89	88.364	Tetraodon_nigroviridis
ENSMZEG00005014187	apex1	99	63.608	ENSTBEG00000006405	APEX1	86	68.364	Tupaia_belangeri
ENSMZEG00005014187	apex1	76	70.213	ENSTTRG00000007860	APEX1	100	70.213	Tursiops_truncatus
ENSMZEG00005014187	apex1	99	66.139	ENSUAMG00000010457	APEX1	87	70.652	Ursus_americanus
ENSMZEG00005014187	apex1	99	66.139	ENSUMAG00000009178	APEX1	87	70.652	Ursus_maritimus
ENSMZEG00005014187	apex1	76	66.809	ENSVPAG00000005083	APEX1	100	66.809	Vicugna_pacos
ENSMZEG00005014187	apex1	99	66.139	ENSVVUG00000009010	APEX1	86	71.273	Vulpes_vulpes
ENSMZEG00005014187	apex1	99	70.701	ENSXETG00000024773	apex1	87	74.909	Xenopus_tropicalis
ENSMZEG00005014187	apex1	100	90.968	ENSXCOG00000015233	apex1	99	90.968	Xiphophorus_couchianus
ENSMZEG00005014187	apex1	100	90.968	ENSXMAG00000006195	apex1	100	90.968	Xiphophorus_maculatus