EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005014882 (Gene tree)
Gene ID: 101473051
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 21904 bases
Position: chrLG16:29903746-29925649
Accession: 101473051
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005020334	KH_1	PF00013.29	1.8e-50	1	3
ENSMZEP00005020334	KH_1	PF00013.29	1.8e-50	2	3
ENSMZEP00005020334	KH_1	PF00013.29	1.8e-50	3	3
ENSMZEP00005020324	KH_1	PF00013.29	2.1e-50	1	3
ENSMZEP00005020324	KH_1	PF00013.29	2.1e-50	2	3
ENSMZEP00005020324	KH_1	PF00013.29	2.1e-50	3	3
ENSMZEP00005020550	KH_1	PF00013.29	8.8e-42	1	2
ENSMZEP00005020550	KH_1	PF00013.29	8.8e-42	2	2
ENSMZEP00005020324	KH_2	PF07650.17	4.2e-12	1	1
ENSMZEP00005020334	KH_2	PF07650.17	1.3e-11	1	1
ENSMZEP00005020550	KH_2	PF07650.17	3.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005020976	-	1029	XM_004559173	ENSMZEP00005020324	342 (aa)	XP_004559230	-
ENSMZET00005021219	-	909	-	ENSMZEP00005020550	302 (aa)	-	-
ENSMZET00005020986	-	993	XM_012921306	ENSMZEP00005020334	330 (aa)	XP_012776760	-

Gene Model

Click here to download ENSMZEG00005014882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005014882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005014882	-	95	89.776	ENSAPOG00000020003	pcbp3	86	89.137	Acanthochromis_polyacanthus
ENSMZEG00005014882	-	100	90.237	ENSAPOG00000016582	-	100	89.645	Acanthochromis_polyacanthus
ENSMZEG00005014882	-	98	84.012	ENSAMEG00000001697	-	96	81.899	Ailuropoda_melanoleuca
ENSMZEG00005014882	-	100	90.029	ENSACIG00000010933	pcbp3	100	90.029	Amphilophus_citrinellus
ENSMZEG00005014882	-	100	86.744	ENSACIG00000002739	-	97	90.909	Amphilophus_citrinellus
ENSMZEG00005014882	-	97	85.976	ENSAOCG00000008592	-	100	85.366	Amphiprion_ocellaris
ENSMZEG00005014882	-	91	87.097	ENSAOCG00000007806	-	100	87.097	Amphiprion_ocellaris
ENSMZEG00005014882	-	100	87.042	ENSAPEG00000008011	pcbp3	100	86.932	Amphiprion_percula
ENSMZEG00005014882	-	100	85.632	ENSAPEG00000005209	-	97	89.062	Amphiprion_percula
ENSMZEG00005014882	-	95	89.024	ENSATEG00000015787	-	100	88.923	Anabas_testudineus
ENSMZEG00005014882	-	100	86.667	ENSATEG00000009833	-	97	90.221	Anabas_testudineus
ENSMZEG00005014882	-	98	83.382	ENSAPLG00000002975	-	98	82.799	Anas_platyrhynchos
ENSMZEG00005014882	-	98	71.390	ENSAPLG00000008951	-	82	68.966	Anas_platyrhynchos
ENSMZEG00005014882	-	98	82.143	ENSACAG00000004607	-	99	81.994	Anolis_carolinensis
ENSMZEG00005014882	-	99	74.515	ENSACAG00000009819	-	96	78.788	Anolis_carolinensis
ENSMZEG00005014882	-	93	72.325	ENSANAG00000030702	-	96	85.774	Aotus_nancymaae
ENSMZEG00005014882	-	100	90.828	ENSACLG00000003801	-	100	90.237	Astatotilapia_calliptera
ENSMZEG00005014882	-	100	86.197	ENSACLG00000011835	pcbp3	100	86.080	Astatotilapia_calliptera
ENSMZEG00005014882	-	96	65.839	ENSAMXG00000001760	zgc:110045	73	68.615	Astyanax_mexicanus
ENSMZEG00005014882	-	95	87.859	ENSAMXG00000013588	-	100	87.859	Astyanax_mexicanus
ENSMZEG00005014882	-	100	88.385	ENSAMXG00000003440	pcbp3	100	88.286	Astyanax_mexicanus
ENSMZEG00005014882	-	90	83.951	ENSCAFG00020019472	-	83	83.128	Canis_lupus_dingo
ENSMZEG00005014882	-	98	83.090	ENSCSAG00000007440	-	87	86.349	Chlorocebus_sabaeus
ENSMZEG00005014882	-	89	86.885	ENSCPBG00000000733	-	69	86.885	Chrysemys_picta_bellii
ENSMZEG00005014882	-	98	83.686	ENSCPBG00000012151	-	99	82.421	Chrysemys_picta_bellii
ENSMZEG00005014882	-	100	76.000	ENSCSEG00000016984	-	100	77.193	Cynoglossus_semilaevis
ENSMZEG00005014882	-	95	88.179	ENSCSEG00000000822	pcbp3	99	87.540	Cynoglossus_semilaevis
ENSMZEG00005014882	-	100	87.006	ENSCVAG00000014482	pcbp3	100	86.895	Cyprinodon_variegatus
ENSMZEG00005014882	-	100	89.349	ENSCVAG00000005262	-	100	88.757	Cyprinodon_variegatus
ENSMZEG00005014882	-	100	88.669	ENSDARG00000054378	pcbp3	100	88.571	Danio_rerio
ENSMZEG00005014882	-	98	72.303	ENSETEG00000015988	-	95	74.921	Echinops_telfairi
ENSMZEG00005014882	-	98	69.075	ENSEBUG00000007485	-	80	81.152	Eptatretus_burgeri
ENSMZEG00005014882	-	88	66.182	ENSEBUG00000016192	pcbp3	99	66.544	Eptatretus_burgeri
ENSMZEG00005014882	-	87	64.979	ENSEBUG00000005495	pcbp3	74	61.628	Eptatretus_burgeri
ENSMZEG00005014882	-	100	89.053	ENSELUG00000001560	-	100	79.494	Esox_lucius
ENSMZEG00005014882	-	100	87.079	ENSELUG00000003521	pcbp3	100	86.969	Esox_lucius
ENSMZEG00005014882	-	98	71.662	ENSFALG00000004411	-	77	69.496	Ficedula_albicollis
ENSMZEG00005014882	-	98	82.216	ENSFALG00000003949	-	95	86.667	Ficedula_albicollis
ENSMZEG00005014882	-	97	87.812	ENSFHEG00000016615	pcbp3	97	87.812	Fundulus_heteroclitus
ENSMZEG00005014882	-	100	85.345	ENSFHEG00000006539	-	97	88.750	Fundulus_heteroclitus
ENSMZEG00005014882	-	97	74.277	ENSGMOG00000011992	pcbp3	97	73.988	Gadus_morhua
ENSMZEG00005014882	-	96	64.638	ENSGMOG00000008611	-	100	64.326	Gadus_morhua
ENSMZEG00005014882	-	93	79.751	ENSGALG00000013155	-	98	80.503	Gallus_gallus
ENSMZEG00005014882	-	98	82.730	ENSGALG00000004394	-	99	82.584	Gallus_gallus
ENSMZEG00005014882	-	95	86.186	ENSGAFG00000011430	pcbp3	96	86.061	Gambusia_affinis
ENSMZEG00005014882	-	100	89.645	ENSGAFG00000010274	-	100	89.053	Gambusia_affinis
ENSMZEG00005014882	-	100	85.836	ENSGACG00000002266	-	100	85.269	Gasterosteus_aculeatus
ENSMZEG00005014882	-	100	75.749	ENSGACG00000014955	-	100	75.749	Gasterosteus_aculeatus
ENSMZEG00005014882	-	84	81.295	ENSGAGG00000000271	-	100	81.295	Gopherus_agassizii
ENSMZEG00005014882	-	74	88.298	ENSGAGG00000006956	-	85	85.294	Gopherus_agassizii
ENSMZEG00005014882	-	100	86.441	ENSHBUG00000010697	pcbp3	100	86.325	Haplochromis_burtoni
ENSMZEG00005014882	-	100	90.828	ENSHBUG00000021782	-	100	90.237	Haplochromis_burtoni
ENSMZEG00005014882	-	100	87.252	ENSHCOG00000017868	pcbp3	100	87.143	Hippocampus_comes
ENSMZEG00005014882	-	100	83.429	ENSHCOG00000006067	-	97	87.578	Hippocampus_comes
ENSMZEG00005014882	-	100	85.965	ENSIPUG00000006238	pcbp3	97	89.490	Ictalurus_punctatus
ENSMZEG00005014882	-	100	87.042	ENSKMAG00000003046	pcbp3	100	86.932	Kryptolebias_marmoratus
ENSMZEG00005014882	-	100	88.757	ENSKMAG00000018530	-	100	88.166	Kryptolebias_marmoratus
ENSMZEG00005014882	-	96	87.461	ENSLBEG00000006201	pcbp3	96	86.834	Labrus_bergylta
ENSMZEG00005014882	-	100	86.866	ENSLBEG00000006542	-	100	86.866	Labrus_bergylta
ENSMZEG00005014882	-	93	79.772	ENSLACG00000010386	pcbp3	74	79.772	Latimeria_chalumnae
ENSMZEG00005014882	-	99	72.011	ENSLACG00000010804	zgc:110045	77	71.467	Latimeria_chalumnae
ENSMZEG00005014882	-	98	83.478	ENSLOCG00000009369	pcbp3	96	86.544	Lepisosteus_oculatus
ENSMZEG00005014882	-	93	78.419	ENSLOCG00000005058	zgc:110045	80	79.141	Lepisosteus_oculatus
ENSMZEG00005014882	-	95	89.457	ENSMAMG00000022336	pcbp3	93	89.457	Mastacembelus_armatus
ENSMZEG00005014882	-	100	85.507	ENSMAMG00000011620	-	97	88.959	Mastacembelus_armatus
ENSMZEG00005014882	-	100	86.686	ENSMZEG00005008993	pcbp3	100	86.571	Maylandia_zebra
ENSMZEG00005014882	-	98	71.662	ENSMGAG00000006794	-	77	71.390	Meleagris_gallopavo
ENSMZEG00005014882	-	95	75.645	ENSMGAG00000001883	-	96	75.793	Meleagris_gallopavo
ENSMZEG00005014882	-	95	85.139	ENSMMOG00000000730	pcbp3	88	85.139	Mola_mola
ENSMZEG00005014882	-	100	86.550	ENSMMOG00000005216	-	97	90.446	Mola_mola
ENSMZEG00005014882	-	75	76.256	ENSMODG00000027884	-	93	75.926	Monodelphis_domestica
ENSMZEG00005014882	-	100	89.017	ENSMALG00000000691	pcbp3	100	88.921	Monopterus_albus
ENSMZEG00005014882	-	98	80.347	ENSMPUG00000001779	-	90	80.347	Mustela_putorius_furo
ENSMZEG00005014882	-	100	88.953	ENSNBRG00000016409	-	100	88.856	Neolamprologus_brichardi
ENSMZEG00005014882	-	100	99.697	ENSNBRG00000016714	-	100	99.697	Neolamprologus_brichardi
ENSMZEG00005014882	-	96	81.897	ENSOPRG00000003431	-	99	81.322	Ochotona_princeps
ENSMZEG00005014882	-	100	86.000	ENSONIG00000004611	-	97	89.441	Oreochromis_niloticus
ENSMZEG00005014882	-	97	82.584	ENSONIG00000012122	-	98	82.436	Oreochromis_niloticus
ENSMZEG00005014882	-	98	82.216	ENSOCUG00000002696	-	87	86.349	Oryctolagus_cuniculus
ENSMZEG00005014882	-	95	87.539	ENSORLG00000000059	pcbp3	100	86.916	Oryzias_latipes
ENSMZEG00005014882	-	99	89.021	ENSORLG00000022739	-	99	88.427	Oryzias_latipes
ENSMZEG00005014882	-	95	87.539	ENSORLG00020012671	pcbp3	97	86.916	Oryzias_latipes_hni
ENSMZEG00005014882	-	99	89.021	ENSORLG00020006124	-	99	88.131	Oryzias_latipes_hni
ENSMZEG00005014882	-	99	89.021	ENSORLG00015008051	-	99	88.427	Oryzias_latipes_hsok
ENSMZEG00005014882	-	95	87.539	ENSORLG00015000429	pcbp3	97	86.916	Oryzias_latipes_hsok
ENSMZEG00005014882	-	88	88.927	ENSOMEG00000020811	pcbp3	96	88.235	Oryzias_melastigma
ENSMZEG00005014882	-	100	86.257	ENSOMEG00000020162	-	97	90.127	Oryzias_melastigma
ENSMZEG00005014882	-	98	78.846	ENSOGAG00000008044	-	99	78.297	Otolemur_garnettii
ENSMZEG00005014882	-	75	88.333	ENSPKIG00000020913	-	81	88.333	Paramormyrops_kingsleyae
ENSMZEG00005014882	-	100	88.462	ENSPKIG00000019329	pcbp3	100	88.462	Paramormyrops_kingsleyae
ENSMZEG00005014882	-	75	73.846	ENSPSIG00000008350	-	72	74.231	Pelodiscus_sinensis
ENSMZEG00005014882	-	98	74.212	ENSPSIG00000014970	-	98	73.352	Pelodiscus_sinensis
ENSMZEG00005014882	-	100	86.969	ENSPMGG00000022383	pcbp3	100	86.857	Periophthalmus_magnuspinnatus
ENSMZEG00005014882	-	95	66.769	ENSPMAG00000004551	pcbp3	90	66.769	Petromyzon_marinus
ENSMZEG00005014882	-	73	84.043	ENSPMAG00000004637	-	97	84.043	Petromyzon_marinus
ENSMZEG00005014882	-	98	82.402	ENSPCIG00000028092	-	96	86.239	Phascolarctos_cinereus
ENSMZEG00005014882	-	100	82.123	ENSPLAG00000011449	pcbp3	100	76.726	Poecilia_latipinna
ENSMZEG00005014882	-	99	87.870	ENSPLAG00000004074	-	92	87.870	Poecilia_latipinna
ENSMZEG00005014882	-	100	86.275	ENSPMEG00000021239	pcbp3	100	86.158	Poecilia_mexicana
ENSMZEG00005014882	-	100	92.515	ENSPMEG00000006653	-	100	92.515	Poecilia_mexicana
ENSMZEG00005014882	-	95	87.619	ENSPREG00000015736	pcbp3	99	86.984	Poecilia_reticulata
ENSMZEG00005014882	-	100	86.550	ENSPREG00000020585	-	97	90.446	Poecilia_reticulata
ENSMZEG00005014882	-	100	88.012	ENSPNYG00000013205	-	97	91.720	Pundamilia_nyererei
ENSMZEG00005014882	-	95	87.227	ENSPNYG00000012326	pcbp3	95	86.604	Pundamilia_nyererei
ENSMZEG00005014882	-	100	85.552	ENSPNAG00000008541	-	98	87.781	Pygocentrus_nattereri
ENSMZEG00005014882	-	100	84.571	ENSPNAG00000015104	pcbp3	97	87.888	Pygocentrus_nattereri
ENSMZEG00005014882	-	98	82.799	ENSRNOG00000001245	Pcbp3	95	86.349	Rattus_norvegicus
ENSMZEG00005014882	-	98	74.648	ENSRBIG00000028177	-	99	73.190	Rhinopithecus_bieti
ENSMZEG00005014882	-	98	82.421	ENSSHAG00000007890	-	99	82.421	Sarcophilus_harrisii
ENSMZEG00005014882	-	100	89.053	ENSSFOG00015010205	pcbp3	100	89.053	Scleropages_formosus
ENSMZEG00005014882	-	98	74.194	ENSSFOG00015007118	-	93	79.808	Scleropages_formosus
ENSMZEG00005014882	-	100	86.080	ENSSFOG00015014706	pcbp3	100	85.960	Scleropages_formosus
ENSMZEG00005014882	-	95	89.776	ENSSMAG00000011929	pcbp3	97	89.137	Scophthalmus_maximus
ENSMZEG00005014882	-	100	89.349	ENSSMAG00000003135	-	100	88.757	Scophthalmus_maximus
ENSMZEG00005014882	-	100	93.134	ENSSDUG00000008502	-	100	93.134	Seriola_dumerili
ENSMZEG00005014882	-	95	88.450	ENSSDUG00000011608	pcbp3	99	88.344	Seriola_dumerili
ENSMZEG00005014882	-	100	90.237	ENSSLDG00000020161	-	100	89.645	Seriola_lalandi_dorsalis
ENSMZEG00005014882	-	95	88.450	ENSSLDG00000008518	pcbp3	99	88.344	Seriola_lalandi_dorsalis
ENSMZEG00005014882	-	98	72.981	ENSSPUG00000013214	-	84	88.462	Sphenodon_punctatus
ENSMZEG00005014882	-	100	79.070	ENSSPAG00000023341	-	100	79.070	Stegastes_partitus
ENSMZEG00005014882	-	91	87.419	ENSSPAG00000004190	-	100	87.419	Stegastes_partitus
ENSMZEG00005014882	-	98	76.385	ENSTGUG00000008158	-	96	80.635	Taeniopygia_guttata
ENSMZEG00005014882	-	98	80.403	ENSTGUG00000003316	-	99	79.827	Taeniopygia_guttata
ENSMZEG00005014882	-	99	81.232	ENSTRUG00000006280	-	96	84.345	Takifugu_rubripes
ENSMZEG00005014882	-	100	87.464	ENSTRUG00000013604	pcbp3	100	87.464	Takifugu_rubripes
ENSMZEG00005014882	-	98	80.726	ENSTTRG00000015075	-	99	80.332	Tursiops_truncatus
ENSMZEG00005014882	-	93	72.012	ENSXETG00000010491	pcbp2	75	71.137	Xenopus_tropicalis
ENSMZEG00005014882	-	98	82.029	ENSXETG00000011483	pcbp1	99	82.029	Xenopus_tropicalis
ENSMZEG00005014882	-	100	86.275	ENSXCOG00000020481	pcbp3	100	86.158	Xiphophorus_couchianus
ENSMZEG00005014882	-	100	89.941	ENSXMAG00000028711	-	100	89.349	Xiphophorus_maculatus
ENSMZEG00005014882	-	100	87.042	ENSXMAG00000008175	pcbp3	100	86.932	Xiphophorus_maculatus