EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005015099 (Gene tree)
Gene ID: 101463778
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 25354 bases
Position: chrLG18:27280687-27306040
Accession: 101463778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005020124	XRN_N	PF03159.18	1.3e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005020771	-	8984	XM_014410931	ENSMZEP00005020124	1706 (aa)	XP_014266417	UPI00064645ED

Gene Model

Click here to download ENSMZEG00005015099's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03008	Ribosome biogenesis in eukaryotes	KEGG
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005015099's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005015099	xrn1	99	60.193	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSMZEG00005015099	xrn1	97	87.332	ENSAPOG00000000622	xrn1	96	85.093	Acanthochromis_polyacanthus
ENSMZEG00005015099	xrn1	96	61.386	ENSAMEG00000012538	XRN1	100	60.111	Ailuropoda_melanoleuca
ENSMZEG00005015099	xrn1	95	93.694	ENSACIG00000001057	xrn1	99	93.694	Amphilophus_citrinellus
ENSMZEG00005015099	xrn1	99	84.012	ENSAOCG00000014097	xrn1	100	84.070	Amphiprion_ocellaris
ENSMZEG00005015099	xrn1	99	86.105	ENSAPEG00000006620	xrn1	100	86.221	Amphiprion_percula
ENSMZEG00005015099	xrn1	98	85.457	ENSATEG00000009752	xrn1	99	85.614	Anabas_testudineus
ENSMZEG00005015099	xrn1	98	60.939	ENSAPLG00000004905	XRN1	100	60.573	Anas_platyrhynchos
ENSMZEG00005015099	xrn1	99	59.547	ENSACAG00000004985	XRN1	100	59.413	Anolis_carolinensis
ENSMZEG00005015099	xrn1	99	60.520	ENSANAG00000029013	XRN1	99	73.023	Aotus_nancymaae
ENSMZEG00005015099	xrn1	100	99.707	ENSACLG00000004806	xrn1	100	99.707	Astatotilapia_calliptera
ENSMZEG00005015099	xrn1	99	68.177	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSMZEG00005015099	xrn1	99	60.407	ENSBTAG00000011524	XRN1	100	60.045	Bos_taurus
ENSMZEG00005015099	xrn1	70	37.957	WBGene00012730	xrn-1	80	37.605	Caenorhabditis_elegans
ENSMZEG00005015099	xrn1	99	60.259	ENSCJAG00000001872	XRN1	100	60.385	Callithrix_jacchus
ENSMZEG00005015099	xrn1	95	62.091	ENSCAFG00000007783	XRN1	100	60.562	Canis_familiaris
ENSMZEG00005015099	xrn1	95	62.091	ENSCAFG00020009120	XRN1	99	75.314	Canis_lupus_dingo
ENSMZEG00005015099	xrn1	99	60.157	ENSCHIG00000019192	XRN1	99	59.476	Capra_hircus
ENSMZEG00005015099	xrn1	99	60.708	ENSTSYG00000002705	XRN1	100	60.629	Carlito_syrichta
ENSMZEG00005015099	xrn1	50	84.186	ENSCAPG00000004604	-	94	84.186	Cavia_aperea
ENSMZEG00005015099	xrn1	99	60.238	ENSCCAG00000034800	XRN1	99	77.093	Cebus_capucinus
ENSMZEG00005015099	xrn1	96	62.100	ENSCATG00000041794	XRN1	100	60.364	Cercocebus_atys
ENSMZEG00005015099	xrn1	99	61.351	ENSCLAG00000001451	XRN1	99	77.179	Chinchilla_lanigera
ENSMZEG00005015099	xrn1	96	61.566	ENSCSAG00000011265	XRN1	100	59.864	Chlorocebus_sabaeus
ENSMZEG00005015099	xrn1	53	93.506	ENSCHOG00000013961	-	51	93.506	Choloepus_hoffmanni
ENSMZEG00005015099	xrn1	69	50.996	ENSCSAVG00000008584	-	93	50.996	Ciona_savignyi
ENSMZEG00005015099	xrn1	96	62.018	ENSCANG00000037495	XRN1	99	77.093	Colobus_angolensis_palliatus
ENSMZEG00005015099	xrn1	95	61.827	ENSCGRG00001019411	Xrn1	99	77.179	Cricetulus_griseus_chok1gshd
ENSMZEG00005015099	xrn1	95	61.827	ENSCGRG00000012464	Xrn1	99	77.179	Cricetulus_griseus_crigri
ENSMZEG00005015099	xrn1	99	71.124	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSMZEG00005015099	xrn1	66	82.420	ENSCVAG00000013089	xrn1	99	85.777	Cyprinodon_variegatus
ENSMZEG00005015099	xrn1	99	71.239	ENSDARG00000091652	xrn1	98	81.435	Danio_rerio
ENSMZEG00005015099	xrn1	97	61.095	ENSDORG00000013833	Xrn1	100	60.102	Dipodomys_ordii
ENSMZEG00005015099	xrn1	75	38.693	FBgn0020261	pcm	78	38.843	Drosophila_melanogaster
ENSMZEG00005015099	xrn1	86	71.171	ENSETEG00000003978	XRN1	88	71.074	Echinops_telfairi
ENSMZEG00005015099	xrn1	89	72.838	ENSEASG00005002687	XRN1	99	77.373	Equus_asinus_asinus
ENSMZEG00005015099	xrn1	95	62.157	ENSECAG00000008301	XRN1	100	60.113	Equus_caballus
ENSMZEG00005015099	xrn1	92	65.336	ENSEEUG00000011323	XRN1	85	65.336	Erinaceus_europaeus
ENSMZEG00005015099	xrn1	99	71.945	ENSELUG00000000169	xrn1	100	72.305	Esox_lucius
ENSMZEG00005015099	xrn1	96	58.848	ENSFCAG00000027589	XRN1	99	79.130	Felis_catus
ENSMZEG00005015099	xrn1	99	60.853	ENSFALG00000007021	XRN1	100	60.831	Ficedula_albicollis
ENSMZEG00005015099	xrn1	99	60.147	ENSFDAG00000020494	XRN1	99	77.021	Fukomys_damarensis
ENSMZEG00005015099	xrn1	90	74.220	ENSGMOG00000006396	xrn1	88	74.795	Gadus_morhua
ENSMZEG00005015099	xrn1	99	61.466	ENSGALG00000002706	XRN1	100	61.043	Gallus_gallus
ENSMZEG00005015099	xrn1	99	77.201	ENSGACG00000014328	xrn1	100	77.144	Gasterosteus_aculeatus
ENSMZEG00005015099	xrn1	94	62.500	ENSGAGG00000017535	XRN1	99	62.500	Gopherus_agassizii
ENSMZEG00005015099	xrn1	99	60.420	ENSGGOG00000008047	XRN1	100	60.137	Gorilla_gorilla
ENSMZEG00005015099	xrn1	100	94.728	ENSHBUG00000005908	xrn1	100	94.728	Haplochromis_burtoni
ENSMZEG00005015099	xrn1	99	61.177	ENSHGLG00000014476	XRN1	99	77.021	Heterocephalus_glaber_female
ENSMZEG00005015099	xrn1	99	61.177	ENSHGLG00100015130	XRN1	99	77.021	Heterocephalus_glaber_male
ENSMZEG00005015099	xrn1	94	83.592	ENSHCOG00000014062	xrn1	99	83.592	Hippocampus_comes
ENSMZEG00005015099	xrn1	99	68.500	ENSIPUG00000015229	xrn1	100	68.754	Ictalurus_punctatus
ENSMZEG00005015099	xrn1	97	60.852	ENSSTOG00000013552	XRN1	99	76.704	Ictidomys_tridecemlineatus
ENSMZEG00005015099	xrn1	98	59.689	ENSJJAG00000010863	Xrn1	99	76.568	Jaculus_jaculus
ENSMZEG00005015099	xrn1	99	77.180	ENSKMAG00000021356	xrn1	95	84.277	Kryptolebias_marmoratus
ENSMZEG00005015099	xrn1	99	78.078	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSMZEG00005015099	xrn1	99	60.247	ENSLACG00000009020	XRN1	99	60.382	Latimeria_chalumnae
ENSMZEG00005015099	xrn1	99	66.028	ENSLOCG00000007944	xrn1	100	66.404	Lepisosteus_oculatus
ENSMZEG00005015099	xrn1	62	73.585	ENSLAFG00000015426	XRN1	99	73.271	Loxodonta_africana
ENSMZEG00005015099	xrn1	96	62.040	ENSMFAG00000032599	XRN1	100	60.308	Macaca_fascicularis
ENSMZEG00005015099	xrn1	96	62.040	ENSMMUG00000014038	XRN1	100	60.308	Macaca_mulatta
ENSMZEG00005015099	xrn1	96	62.055	ENSMNEG00000034217	XRN1	100	60.319	Macaca_nemestrina
ENSMZEG00005015099	xrn1	95	87.706	ENSMAMG00000013219	xrn1	99	87.784	Mastacembelus_armatus
ENSMZEG00005015099	xrn1	99	59.661	ENSMGAG00000006333	XRN1	100	59.232	Meleagris_gallopavo
ENSMZEG00005015099	xrn1	99	60.568	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSMZEG00005015099	xrn1	57	77.373	ENSMOCG00000008665	Xrn1	99	77.021	Microtus_ochrogaster
ENSMZEG00005015099	xrn1	99	59.563	ENSMODG00000021236	XRN1	100	59.899	Monodelphis_domestica
ENSMZEG00005015099	xrn1	99	77.713	ENSMALG00000004098	xrn1	100	78.062	Monopterus_albus
ENSMZEG00005015099	xrn1	96	77.044	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSMZEG00005015099	xrn1	99	59.922	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSMZEG00005015099	xrn1	99	60.690	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSMZEG00005015099	xrn1	99	59.922	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSMZEG00005015099	xrn1	95	62.212	ENSMPUG00000012040	XRN1	100	60.506	Mustela_putorius_furo
ENSMZEG00005015099	xrn1	99	59.711	ENSMLUG00000016885	XRN1	100	59.577	Myotis_lucifugus
ENSMZEG00005015099	xrn1	57	71.949	ENSNGAG00000023964	Xrn1	99	72.900	Nannospalax_galili
ENSMZEG00005015099	xrn1	96	61.981	ENSNLEG00000004726	XRN1	100	60.308	Nomascus_leucogenys
ENSMZEG00005015099	xrn1	65	95.876	ENSMEUG00000014473	-	66	96.117	Notamacropus_eugenii
ENSMZEG00005015099	xrn1	71	66.423	ENSOPRG00000007337	-	73	67.038	Ochotona_princeps
ENSMZEG00005015099	xrn1	99	92.918	ENSONIG00000016673	xrn1	99	97.274	Oreochromis_niloticus
ENSMZEG00005015099	xrn1	92	57.740	ENSOANG00000006735	XRN1	99	57.512	Ornithorhynchus_anatinus
ENSMZEG00005015099	xrn1	99	59.879	ENSOCUG00000001861	XRN1	100	59.735	Oryctolagus_cuniculus
ENSMZEG00005015099	xrn1	100	82.535	ENSORLG00000013005	xrn1	98	82.535	Oryzias_latipes
ENSMZEG00005015099	xrn1	99	82.291	ENSORLG00020005559	xrn1	100	82.291	Oryzias_latipes_hni
ENSMZEG00005015099	xrn1	99	81.765	ENSORLG00015022523	xrn1	100	81.765	Oryzias_latipes_hsok
ENSMZEG00005015099	xrn1	94	88.115	ENSOMEG00000015397	xrn1	99	88.115	Oryzias_melastigma
ENSMZEG00005015099	xrn1	97	59.534	ENSOGAG00000000170	XRN1	100	58.630	Otolemur_garnettii
ENSMZEG00005015099	xrn1	99	60.476	ENSOARG00000006343	XRN1	99	60.057	Ovis_aries
ENSMZEG00005015099	xrn1	99	60.498	ENSPPAG00000010180	XRN1	100	60.147	Pan_paniscus
ENSMZEG00005015099	xrn1	97	62.045	ENSPPRG00000007125	XRN1	100	61.045	Panthera_pardus
ENSMZEG00005015099	xrn1	96	62.441	ENSPTIG00000021081	XRN1	100	61.045	Panthera_tigris_altaica
ENSMZEG00005015099	xrn1	99	60.498	ENSPTRG00000015482	XRN1	100	60.147	Pan_troglodytes
ENSMZEG00005015099	xrn1	99	60.647	ENSPANG00000010638	XRN1	100	60.364	Papio_anubis
ENSMZEG00005015099	xrn1	99	60.310	ENSPSIG00000018050	XRN1	100	60.310	Pelodiscus_sinensis
ENSMZEG00005015099	xrn1	57	86.010	ENSPMGG00000002648	xrn1	99	86.446	Periophthalmus_magnuspinnatus
ENSMZEG00005015099	xrn1	57	77.532	ENSPEMG00000020610	Xrn1	99	77.179	Peromyscus_maniculatus_bairdii
ENSMZEG00005015099	xrn1	65	51.220	ENSPMAG00000002975	xrn1	99	49.201	Petromyzon_marinus
ENSMZEG00005015099	xrn1	90	73.317	ENSPCIG00000028735	XRN1	99	77.813	Phascolarctos_cinereus
ENSMZEG00005015099	xrn1	90	84.262	ENSPFOG00000013932	xrn1	99	84.521	Poecilia_formosa
ENSMZEG00005015099	xrn1	90	84.675	ENSPLAG00000021653	xrn1	99	84.805	Poecilia_latipinna
ENSMZEG00005015099	xrn1	88	84.861	ENSPMEG00000003076	xrn1	95	85.060	Poecilia_mexicana
ENSMZEG00005015099	xrn1	99	82.189	ENSPREG00000021147	xrn1	100	82.500	Poecilia_reticulata
ENSMZEG00005015099	xrn1	99	60.147	ENSPPYG00000014172	XRN1	100	59.921	Pongo_abelii
ENSMZEG00005015099	xrn1	87	59.247	ENSPCAG00000005638	XRN1	96	59.365	Procavia_capensis
ENSMZEG00005015099	xrn1	97	61.765	ENSPCOG00000013089	XRN1	99	76.619	Propithecus_coquereli
ENSMZEG00005015099	xrn1	86	70.233	ENSPVAG00000016265	XRN1	91	70.233	Pteropus_vampyrus
ENSMZEG00005015099	xrn1	100	96.659	ENSPNYG00000010570	xrn1	100	96.659	Pundamilia_nyererei
ENSMZEG00005015099	xrn1	99	69.026	ENSPNAG00000023531	xrn1	100	68.968	Pygocentrus_nattereri
ENSMZEG00005015099	xrn1	99	59.921	ENSRNOG00000042951	Xrn1	100	59.830	Rattus_norvegicus
ENSMZEG00005015099	xrn1	96	61.698	ENSRBIG00000041227	XRN1	100	59.886	Rhinopithecus_bieti
ENSMZEG00005015099	xrn1	70	33.231	YGL173C	XRN1	74	52.989	Saccharomyces_cerevisiae
ENSMZEG00005015099	xrn1	99	60.181	ENSSBOG00000029561	XRN1	100	60.215	Saimiri_boliviensis_boliviensis
ENSMZEG00005015099	xrn1	98	59.055	ENSSHAG00000016207	XRN1	100	59.132	Sarcophilus_harrisii
ENSMZEG00005015099	xrn1	99	66.764	ENSSFOG00015024211	xrn1	100	66.764	Scleropages_formosus
ENSMZEG00005015099	xrn1	99	82.201	ENSSMAG00000016534	xrn1	99	85.870	Scophthalmus_maximus
ENSMZEG00005015099	xrn1	89	90.410	ENSSDUG00000010306	xrn1	97	90.410	Seriola_dumerili
ENSMZEG00005015099	xrn1	98	88.732	ENSSLDG00000021543	xrn1	99	88.732	Seriola_lalandi_dorsalis
ENSMZEG00005015099	xrn1	61	67.078	ENSSARG00000007741	-	75	67.078	Sorex_araneus
ENSMZEG00005015099	xrn1	99	60.482	ENSTGUG00000008498	XRN1	100	60.779	Taeniopygia_guttata
ENSMZEG00005015099	xrn1	99	72.685	ENSTRUG00000004895	xrn1	96	84.435	Takifugu_rubripes
ENSMZEG00005015099	xrn1	99	71.945	ENSTNIG00000017615	xrn1	100	72.486	Tetraodon_nigroviridis
ENSMZEG00005015099	xrn1	81	83.871	ENSTBEG00000003256	XRN1	88	71.406	Tupaia_belangeri
ENSMZEG00005015099	xrn1	99	57.345	ENSTTRG00000012914	XRN1	100	57.038	Tursiops_truncatus
ENSMZEG00005015099	xrn1	96	60.409	ENSUAMG00000001608	XRN1	99	73.460	Ursus_americanus
ENSMZEG00005015099	xrn1	96	61.561	ENSUMAG00000013625	XRN1	100	60.056	Ursus_maritimus
ENSMZEG00005015099	xrn1	99	58.249	ENSVPAG00000004690	XRN1	100	58.465	Vicugna_pacos
ENSMZEG00005015099	xrn1	96	62.176	ENSVVUG00000024461	XRN1	99	77.725	Vulpes_vulpes
ENSMZEG00005015099	xrn1	99	60.511	ENSXETG00000000619	xrn1	99	85.039	Xenopus_tropicalis
ENSMZEG00005015099	xrn1	99	76.130	ENSXCOG00000007917	xrn1	100	76.419	Xiphophorus_couchianus
ENSMZEG00005015099	xrn1	91	86.148	ENSXMAG00000018320	xrn1	98	86.230	Xiphophorus_maculatus