EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005015247 (Gene tree)
Gene ID: 101480673
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 21173 bases
Position: chrAGTA05000054.1:506224-527396
Accession: 101480673
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005020385	EST1	PF10374.9	4.5e-27	1	1
ENSMZEP00005020367	EST1	PF10374.9	6.7e-27	1	1
ENSMZEP00005020355	EST1	PF10374.9	1.9e-25	1	1
ENSMZEP00005020367	EST1_DNA_bind	PF10373.9	4.3e-48	1	1
ENSMZEP00005020355	EST1_DNA_bind	PF10373.9	4.7e-48	1	1
ENSMZEP00005020385	EST1_DNA_bind	PF10373.9	7.3e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005021019	-	7314	XM_012915499	ENSMZEP00005020367	1137 (aa)	XP_012770953	UPI000329E470
ENSMZET00005021007	-	7464	XM_004573521	ENSMZEP00005020355	1187 (aa)	XP_004573578	UPI000329A458
ENSMZET00005021037	-	3357	-	ENSMZEP00005020385	1118 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005015247's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005015247's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005015247	smg7	99	65.897	ENSG00000116698	SMG7	86	94.340	Homo_sapiens
ENSMZEG00005015247	smg7	89	94.048	ENSAPOG00000009611	smg7	96	94.048	Acanthochromis_polyacanthus
ENSMZEG00005015247	smg7	99	65.517	ENSAMEG00000002357	SMG7	100	64.975	Ailuropoda_melanoleuca
ENSMZEG00005015247	smg7	97	84.972	ENSACIG00000015152	smg7	100	87.950	Amphilophus_citrinellus
ENSMZEG00005015247	smg7	100	90.711	ENSAOCG00000013538	smg7	100	92.636	Amphiprion_ocellaris
ENSMZEG00005015247	smg7	100	90.385	ENSAPEG00000007851	smg7	100	92.224	Amphiprion_percula
ENSMZEG00005015247	smg7	100	89.053	ENSATEG00000006931	smg7	100	89.487	Anabas_testudineus
ENSMZEG00005015247	smg7	93	71.000	ENSAPLG00000015811	SMG7	99	65.150	Anas_platyrhynchos
ENSMZEG00005015247	smg7	99	65.419	ENSACAG00000014989	SMG7	99	65.633	Anolis_carolinensis
ENSMZEG00005015247	smg7	99	65.628	ENSANAG00000028114	SMG7	85	94.231	Aotus_nancymaae
ENSMZEG00005015247	smg7	100	99.832	ENSACLG00000022079	smg7	100	99.832	Astatotilapia_calliptera
ENSMZEG00005015247	smg7	100	76.711	ENSAMXG00000020809	smg7	100	77.148	Astyanax_mexicanus
ENSMZEG00005015247	smg7	99	66.581	ENSBTAG00000008003	SMG7	99	65.787	Bos_taurus
ENSMZEG00005015247	smg7	99	65.952	ENSCJAG00000005135	SMG7	89	91.358	Callithrix_jacchus
ENSMZEG00005015247	smg7	99	64.244	ENSCAFG00000013276	SMG7	97	64.174	Canis_familiaris
ENSMZEG00005015247	smg7	99	65.411	ENSCAFG00020015475	SMG7	89	90.244	Canis_lupus_dingo
ENSMZEG00005015247	smg7	100	64.880	ENSCHIG00000018192	SMG7	99	64.297	Capra_hircus
ENSMZEG00005015247	smg7	99	65.812	ENSTSYG00000002667	SMG7	81	94.268	Carlito_syrichta
ENSMZEG00005015247	smg7	99	64.410	ENSCPOG00000008906	SMG7	99	63.749	Cavia_porcellus
ENSMZEG00005015247	smg7	99	65.783	ENSCCAG00000028596	SMG7	85	94.231	Cebus_capucinus
ENSMZEG00005015247	smg7	99	65.983	ENSCATG00000011063	SMG7	85	94.231	Cercocebus_atys
ENSMZEG00005015247	smg7	99	66.065	ENSCLAG00000010751	SMG7	99	65.556	Chinchilla_lanigera
ENSMZEG00005015247	smg7	99	64.450	ENSCSAG00000012654	SMG7	97	64.450	Chlorocebus_sabaeus
ENSMZEG00005015247	smg7	87	63.043	ENSCHOG00000010522	SMG7	88	63.043	Choloepus_hoffmanni
ENSMZEG00005015247	smg7	99	66.496	ENSCPBG00000015724	SMG7	99	66.240	Chrysemys_picta_bellii
ENSMZEG00005015247	smg7	99	65.866	ENSCANG00000015680	SMG7	85	94.231	Colobus_angolensis_palliatus
ENSMZEG00005015247	smg7	99	65.210	ENSCGRG00001013705	Smg7	99	64.987	Cricetulus_griseus_chok1gshd
ENSMZEG00005015247	smg7	99	65.060	ENSCGRG00000018401	Smg7	100	64.837	Cricetulus_griseus_crigri
ENSMZEG00005015247	smg7	99	81.376	ENSCVAG00000011842	smg7	100	83.251	Cyprinodon_variegatus
ENSMZEG00005015247	smg7	100	76.290	ENSDARG00000060767	smg7	100	76.777	Danio_rerio
ENSMZEG00005015247	smg7	99	64.516	ENSDORG00000007331	Smg7	99	64.033	Dipodomys_ordii
ENSMZEG00005015247	smg7	97	63.745	ENSETEG00000002654	SMG7	99	63.413	Echinops_telfairi
ENSMZEG00005015247	smg7	99	65.235	ENSEASG00005006524	SMG7	99	65.128	Equus_asinus_asinus
ENSMZEG00005015247	smg7	94	88.358	ENSECAG00000004313	SMG7	97	88.131	Equus_caballus
ENSMZEG00005015247	smg7	97	63.853	ENSEEUG00000002024	SMG7	94	63.613	Erinaceus_europaeus
ENSMZEG00005015247	smg7	100	78.347	ENSELUG00000010293	smg7	100	78.730	Esox_lucius
ENSMZEG00005015247	smg7	94	71.154	ENSFCAG00000010900	SMG7	99	71.154	Felis_catus
ENSMZEG00005015247	smg7	99	63.826	ENSFALG00000003047	SMG7	100	64.304	Ficedula_albicollis
ENSMZEG00005015247	smg7	99	64.439	ENSFDAG00000012121	SMG7	99	63.847	Fukomys_damarensis
ENSMZEG00005015247	smg7	100	82.078	ENSFHEG00000011073	smg7	100	82.480	Fundulus_heteroclitus
ENSMZEG00005015247	smg7	89	81.391	ENSGMOG00000004916	smg7	96	81.391	Gadus_morhua
ENSMZEG00005015247	smg7	93	72.000	ENSGALG00000004667	SMG7	99	65.614	Gallus_gallus
ENSMZEG00005015247	smg7	100	80.969	ENSGAFG00000019000	smg7	100	81.960	Gambusia_affinis
ENSMZEG00005015247	smg7	97	82.111	ENSGACG00000001634	smg7	99	82.826	Gasterosteus_aculeatus
ENSMZEG00005015247	smg7	99	66.154	ENSGGOG00000002342	SMG7	82	91.875	Gorilla_gorilla
ENSMZEG00005015247	smg7	100	99.495	ENSHBUG00000003726	smg7	100	99.495	Haplochromis_burtoni
ENSMZEG00005015247	smg7	99	66.324	ENSHGLG00000009353	SMG7	99	65.897	Heterocephalus_glaber_female
ENSMZEG00005015247	smg7	99	59.095	ENSHGLG00100004878	-	99	58.930	Heterocephalus_glaber_male
ENSMZEG00005015247	smg7	99	66.238	ENSHGLG00100009637	-	99	65.812	Heterocephalus_glaber_male
ENSMZEG00005015247	smg7	100	76.214	ENSIPUG00000016997	smg7	100	76.717	Ictalurus_punctatus
ENSMZEG00005015247	smg7	99	65.012	ENSSTOG00000000401	SMG7	99	64.508	Ictidomys_tridecemlineatus
ENSMZEG00005015247	smg7	99	64.901	ENSJJAG00000012351	Smg7	99	64.397	Jaculus_jaculus
ENSMZEG00005015247	smg7	97	80.071	ENSKMAG00000004900	smg7	98	85.644	Kryptolebias_marmoratus
ENSMZEG00005015247	smg7	52	78.727	ENSLBEG00000005220	-	75	78.727	Labrus_bergylta
ENSMZEG00005015247	smg7	99	86.638	ENSLBEG00000002983	smg7	99	86.725	Labrus_bergylta
ENSMZEG00005015247	smg7	100	68.263	ENSLACG00000000972	SMG7	100	68.994	Latimeria_chalumnae
ENSMZEG00005015247	smg7	99	71.124	ENSLOCG00000002010	smg7	99	71.277	Lepisosteus_oculatus
ENSMZEG00005015247	smg7	99	64.735	ENSLAFG00000008186	SMG7	99	64.327	Loxodonta_africana
ENSMZEG00005015247	smg7	99	64.856	ENSMFAG00000031653	SMG7	85	94.231	Macaca_fascicularis
ENSMZEG00005015247	smg7	99	65.078	ENSMMUG00000018458	SMG7	99	64.996	Macaca_mulatta
ENSMZEG00005015247	smg7	99	65.983	ENSMNEG00000034798	SMG7	85	94.231	Macaca_nemestrina
ENSMZEG00005015247	smg7	99	65.983	ENSMLEG00000037170	SMG7	100	65.004	Mandrillus_leucophaeus
ENSMZEG00005015247	smg7	88	86.441	ENSMAMG00000018733	smg7	86	87.665	Mastacembelus_armatus
ENSMZEG00005015247	smg7	99	64.594	ENSMGAG00000001561	SMG7	99	65.120	Meleagris_gallopavo
ENSMZEG00005015247	smg7	99	65.039	ENSMAUG00000019484	Smg7	99	64.816	Mesocricetus_auratus
ENSMZEG00005015247	smg7	99	66.295	ENSMICG00000007145	SMG7	81	94.231	Microcebus_murinus
ENSMZEG00005015247	smg7	99	64.987	ENSMOCG00000020748	Smg7	99	64.731	Microtus_ochrogaster
ENSMZEG00005015247	smg7	94	86.500	ENSMMOG00000001524	smg7	98	86.500	Mola_mola
ENSMZEG00005015247	smg7	92	65.578	ENSMODG00000007139	SMG7	99	64.935	Monodelphis_domestica
ENSMZEG00005015247	smg7	100	87.678	ENSMALG00000000061	smg7	94	88.684	Monopterus_albus
ENSMZEG00005015247	smg7	99	65.277	MGP_CAROLIEiJ_G0014704	Smg7	99	65.325	Mus_caroli
ENSMZEG00005015247	smg7	99	65.210	ENSMUSG00000042772	Smg7	99	64.987	Mus_musculus
ENSMZEG00005015247	smg7	99	65.523	MGP_PahariEiJ_G0027940	Smg7	99	65.299	Mus_pahari
ENSMZEG00005015247	smg7	99	65.296	MGP_SPRETEiJ_G0015511	Smg7	99	65.073	Mus_spretus
ENSMZEG00005015247	smg7	98	64.214	ENSMPUG00000011732	SMG7	97	64.250	Mustela_putorius_furo
ENSMZEG00005015247	smg7	99	64.404	ENSMLUG00000015417	SMG7	99	64.274	Myotis_lucifugus
ENSMZEG00005015247	smg7	100	65.641	ENSNGAG00000009836	Smg7	100	65.417	Nannospalax_galili
ENSMZEG00005015247	smg7	98	90.739	ENSNBRG00000024343	smg7	99	90.739	Neolamprologus_brichardi
ENSMZEG00005015247	smg7	99	66.068	ENSNLEG00000018018	SMG7	100	65.089	Nomascus_leucogenys
ENSMZEG00005015247	smg7	71	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSMZEG00005015247	smg7	96	59.448	ENSOPRG00000013942	SMG7	96	59.845	Ochotona_princeps
ENSMZEG00005015247	smg7	99	65.893	ENSODEG00000010390	SMG7	99	65.385	Octodon_degus
ENSMZEG00005015247	smg7	100	98.598	ENSONIG00000000277	smg7	100	98.598	Oreochromis_niloticus
ENSMZEG00005015247	smg7	99	63.470	ENSOANG00000000994	SMG7	100	63.485	Ornithorhynchus_anatinus
ENSMZEG00005015247	smg7	99	62.023	ENSOCUG00000005887	SMG7	92	62.376	Oryctolagus_cuniculus
ENSMZEG00005015247	smg7	100	79.866	ENSORLG00000007314	smg7	100	80.789	Oryzias_latipes
ENSMZEG00005015247	smg7	100	80.285	ENSORLG00020015779	smg7	100	81.208	Oryzias_latipes_hni
ENSMZEG00005015247	smg7	100	80.537	ENSORLG00015012289	smg7	100	80.956	Oryzias_latipes_hsok
ENSMZEG00005015247	smg7	100	80.285	ENSOMEG00000002328	smg7	100	81.208	Oryzias_melastigma
ENSMZEG00005015247	smg7	97	63.535	ENSOGAG00000003107	SMG7	93	63.520	Otolemur_garnettii
ENSMZEG00005015247	smg7	99	65.096	ENSOARG00000001352	SMG7	100	64.477	Ovis_aries
ENSMZEG00005015247	smg7	99	66.068	ENSPPAG00000031619	SMG7	89	90.798	Pan_paniscus
ENSMZEG00005015247	smg7	99	66.036	ENSPPRG00000011222	SMG7	99	66.296	Panthera_pardus
ENSMZEG00005015247	smg7	97	65.051	ENSPTIG00000007242	SMG7	100	65.313	Panthera_tigris_altaica
ENSMZEG00005015247	smg7	99	66.068	ENSPTRG00000001764	SMG7	85	94.231	Pan_troglodytes
ENSMZEG00005015247	smg7	99	65.983	ENSPANG00000004520	SMG7	99	65.897	Papio_anubis
ENSMZEG00005015247	smg7	100	70.833	ENSPKIG00000007242	smg7	100	71.500	Paramormyrops_kingsleyae
ENSMZEG00005015247	smg7	99	65.799	ENSPSIG00000012201	SMG7	100	65.538	Pelodiscus_sinensis
ENSMZEG00005015247	smg7	66	57.000	ENSPMGG00000021833	smg7	97	50.719	Periophthalmus_magnuspinnatus
ENSMZEG00005015247	smg7	99	65.108	ENSPEMG00000011315	Smg7	99	64.599	Peromyscus_maniculatus_bairdii
ENSMZEG00005015247	smg7	94	71.154	ENSPCIG00000003786	SMG7	89	93.750	Phascolarctos_cinereus
ENSMZEG00005015247	smg7	100	81.660	ENSPFOG00000019219	smg7	100	82.931	Poecilia_formosa
ENSMZEG00005015247	smg7	100	81.472	ENSPLAG00000001446	smg7	100	82.798	Poecilia_latipinna
ENSMZEG00005015247	smg7	97	80.948	ENSPMEG00000005218	smg7	99	82.316	Poecilia_mexicana
ENSMZEG00005015247	smg7	88	78.817	ENSPREG00000019039	smg7	92	79.392	Poecilia_reticulata
ENSMZEG00005015247	smg7	99	66.068	ENSPPYG00000000427	SMG7	99	65.983	Pongo_abelii
ENSMZEG00005015247	smg7	84	72.648	ENSPCAG00000008360	SMG7	86	72.648	Procavia_capensis
ENSMZEG00005015247	smg7	99	65.289	ENSPCOG00000011996	SMG7	76	94.231	Propithecus_coquereli
ENSMZEG00005015247	smg7	91	60.306	ENSPVAG00000000851	SMG7	89	60.179	Pteropus_vampyrus
ENSMZEG00005015247	smg7	100	99.016	ENSPNYG00000007643	smg7	100	99.016	Pundamilia_nyererei
ENSMZEG00005015247	smg7	100	75.874	ENSPNAG00000011374	smg7	100	76.033	Pygocentrus_nattereri
ENSMZEG00005015247	smg7	99	65.638	ENSRNOG00000027962	Smg7	100	64.611	Rattus_norvegicus
ENSMZEG00005015247	smg7	99	65.983	ENSRBIG00000036316	SMG7	100	65.004	Rhinopithecus_bieti
ENSMZEG00005015247	smg7	99	65.983	ENSRROG00000035719	SMG7	100	65.004	Rhinopithecus_roxellana
ENSMZEG00005015247	smg7	99	64.822	ENSSBOG00000023454	SMG7	86	94.340	Saimiri_boliviensis_boliviensis
ENSMZEG00005015247	smg7	100	65.411	ENSSHAG00000013147	SMG7	99	65.184	Sarcophilus_harrisii
ENSMZEG00005015247	smg7	100	74.854	ENSSFOG00015017252	smg7	100	74.793	Scleropages_formosus
ENSMZEG00005015247	smg7	100	84.848	ENSSMAG00000006067	smg7	100	86.577	Scophthalmus_maximus
ENSMZEG00005015247	smg7	96	95.724	ENSSDUG00000017543	smg7	100	90.728	Seriola_dumerili
ENSMZEG00005015247	smg7	99	64.996	ENSSPUG00000002064	SMG7	99	64.741	Sphenodon_punctatus
ENSMZEG00005015247	smg7	99	86.888	ENSSPAG00000008733	smg7	99	87.881	Stegastes_partitus
ENSMZEG00005015247	smg7	99	64.944	ENSSSCG00000015558	SMG7	99	64.807	Sus_scrofa
ENSMZEG00005015247	smg7	99	64.888	ENSTGUG00000003928	SMG7	100	65.411	Taeniopygia_guttata
ENSMZEG00005015247	smg7	100	74.465	ENSTNIG00000002802	smg7	100	74.465	Tetraodon_nigroviridis
ENSMZEG00005015247	smg7	78	68.000	ENSTBEG00000003220	SMG7	75	68.000	Tupaia_belangeri
ENSMZEG00005015247	smg7	96	64.017	ENSTTRG00000014778	SMG7	94	63.969	Tursiops_truncatus
ENSMZEG00005015247	smg7	96	63.693	ENSUAMG00000017473	SMG7	100	63.975	Ursus_americanus
ENSMZEG00005015247	smg7	97	63.706	ENSUMAG00000016389	SMG7	100	63.976	Ursus_maritimus
ENSMZEG00005015247	smg7	94	70.192	ENSVVUG00000008976	SMG7	99	70.192	Vulpes_vulpes
ENSMZEG00005015247	smg7	99	60.745	ENSXETG00000012528	smg7	99	61.154	Xenopus_tropicalis
ENSMZEG00005015247	smg7	100	81.620	ENSXMAG00000007123	smg7	100	82.189	Xiphophorus_maculatus