EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005016420 (Gene tree)
Gene ID: 101482859
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 3875 bases
Position: chrLG15:27876754-27880628
Accession: 101482859
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005021901	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005022618	-	1511	XM_004564792	ENSMZEP00005021901	146 (aa)	XP_004564849	UPI0003AFF612

Gene Model

Click here to download ENSMZEG00005016420's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03018	RNA degradation	KEGG
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005016420's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005016420	lsm4	60	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSMZEG00005016420	lsm4	100	93.377	ENSAPOG00000005643	lsm4	100	93.377	Acanthochromis_polyacanthus
ENSMZEG00005016420	lsm4	60	98.851	ENSAMEG00000011162	LSM4	75	83.740	Ailuropoda_melanoleuca
ENSMZEG00005016420	lsm4	100	95.270	ENSAOCG00000006414	lsm4	100	95.270	Amphiprion_ocellaris
ENSMZEG00005016420	lsm4	100	94.631	ENSAPEG00000006238	lsm4	100	94.631	Amphiprion_percula
ENSMZEG00005016420	lsm4	100	90.132	ENSATEG00000016559	lsm4	100	90.789	Anabas_testudineus
ENSMZEG00005016420	lsm4	60	98.864	ENSANAG00000034659	LSM4	98	78.740	Aotus_nancymaae
ENSMZEG00005016420	lsm4	100	99.320	ENSACLG00000022738	lsm4	100	99.320	Astatotilapia_calliptera
ENSMZEG00005016420	lsm4	100	87.075	ENSAMXG00000016932	lsm4	100	86.395	Astyanax_mexicanus
ENSMZEG00005016420	lsm4	60	98.864	ENSBTAG00000008578	LSM4	79	83.871	Bos_taurus
ENSMZEG00005016420	lsm4	57	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSMZEG00005016420	lsm4	60	98.864	ENSCJAG00000014171	LSM4	79	83.871	Callithrix_jacchus
ENSMZEG00005016420	lsm4	60	98.864	ENSCAFG00000014900	LSM4	72	83.871	Canis_familiaris
ENSMZEG00005016420	lsm4	60	98.864	ENSCAFG00020012137	LSM4	79	83.871	Canis_lupus_dingo
ENSMZEG00005016420	lsm4	60	98.851	ENSCHIG00000010928	LSM4	72	83.740	Capra_hircus
ENSMZEG00005016420	lsm4	60	97.727	ENSTSYG00000030906	LSM4	79	83.065	Carlito_syrichta
ENSMZEG00005016420	lsm4	60	97.727	ENSCAPG00000014140	LSM4	79	83.871	Cavia_aperea
ENSMZEG00005016420	lsm4	60	97.727	ENSCPOG00000024117	LSM4	79	83.871	Cavia_porcellus
ENSMZEG00005016420	lsm4	60	98.864	ENSCCAG00000036308	LSM4	79	83.871	Cebus_capucinus
ENSMZEG00005016420	lsm4	60	98.864	ENSCATG00000029311	LSM4	98	78.906	Cercocebus_atys
ENSMZEG00005016420	lsm4	60	98.864	ENSCLAG00000010828	LSM4	99	81.818	Chinchilla_lanigera
ENSMZEG00005016420	lsm4	60	98.864	ENSCSAG00000005370	LSM4	79	83.871	Chlorocebus_sabaeus
ENSMZEG00005016420	lsm4	60	100.000	ENSCPBG00000012925	LSM4	96	84.173	Chrysemys_picta_bellii
ENSMZEG00005016420	lsm4	59	93.023	ENSCING00000007519	-	91	76.613	Ciona_intestinalis
ENSMZEG00005016420	lsm4	59	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSMZEG00005016420	lsm4	60	98.864	ENSCANG00000043686	LSM4	98	78.906	Colobus_angolensis_palliatus
ENSMZEG00005016420	lsm4	60	95.455	ENSCGRG00001014436	Lsm4	79	81.452	Cricetulus_griseus_chok1gshd
ENSMZEG00005016420	lsm4	60	95.402	ENSCGRG00000009398	Lsm4	96	70.199	Cricetulus_griseus_crigri
ENSMZEG00005016420	lsm4	100	89.726	ENSCSEG00000016127	lsm4	100	91.781	Cynoglossus_semilaevis
ENSMZEG00005016420	lsm4	100	92.466	ENSCVAG00000010601	lsm4	100	92.466	Cyprinodon_variegatus
ENSMZEG00005016420	lsm4	90	91.603	ENSCVAG00000021828	lsm4	98	91.603	Cyprinodon_variegatus
ENSMZEG00005016420	lsm4	96	82.993	ENSDARG00000023852	lsm4	99	85.714	Danio_rerio
ENSMZEG00005016420	lsm4	60	97.727	ENSDORG00000024225	Lsm4	99	81.119	Dipodomys_ordii
ENSMZEG00005016420	lsm4	68	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSMZEG00005016420	lsm4	50	97.260	ENSETEG00000007762	-	77	80.734	Echinops_telfairi
ENSMZEG00005016420	lsm4	51	93.333	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSMZEG00005016420	lsm4	93	89.706	ENSELUG00000012821	lsm4	100	88.971	Esox_lucius
ENSMZEG00005016420	lsm4	60	98.864	ENSFCAG00000040580	LSM4	79	83.871	Felis_catus
ENSMZEG00005016420	lsm4	60	100.000	ENSFALG00000009478	LSM4	96	84.058	Ficedula_albicollis
ENSMZEG00005016420	lsm4	60	98.851	ENSFDAG00000010124	LSM4	79	83.740	Fukomys_damarensis
ENSMZEG00005016420	lsm4	99	81.333	ENSGMOG00000007729	lsm4	99	81.333	Gadus_morhua
ENSMZEG00005016420	lsm4	60	100.000	ENSGALG00000003385	LSM4	96	84.173	Gallus_gallus
ENSMZEG00005016420	lsm4	100	91.781	ENSGAFG00000004903	lsm4	97	89.313	Gambusia_affinis
ENSMZEG00005016420	lsm4	100	86.000	ENSGACG00000008140	lsm4	100	89.333	Gasterosteus_aculeatus
ENSMZEG00005016420	lsm4	60	100.000	ENSGAGG00000017812	LSM4	96	84.173	Gopherus_agassizii
ENSMZEG00005016420	lsm4	60	98.864	ENSGGOG00000012914	-	98	78.906	Gorilla_gorilla
ENSMZEG00005016420	lsm4	100	100.000	ENSHBUG00000008858	lsm4	80	100.000	Haplochromis_burtoni
ENSMZEG00005016420	lsm4	97	76.923	ENSHGLG00000006568	LSM4	99	82.517	Heterocephalus_glaber_female
ENSMZEG00005016420	lsm4	63	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSMZEG00005016420	lsm4	100	93.151	ENSHCOG00000008819	lsm4	100	93.151	Hippocampus_comes
ENSMZEG00005016420	lsm4	100	87.075	ENSIPUG00000005368	Lsm4	100	86.395	Ictalurus_punctatus
ENSMZEG00005016420	lsm4	60	98.864	ENSSTOG00000016494	LSM4	79	83.871	Ictidomys_tridecemlineatus
ENSMZEG00005016420	lsm4	60	96.591	ENSJJAG00000017420	Lsm4	79	82.258	Jaculus_jaculus
ENSMZEG00005016420	lsm4	100	89.726	ENSKMAG00000005073	lsm4	100	92.466	Kryptolebias_marmoratus
ENSMZEG00005016420	lsm4	100	94.631	ENSLBEG00000027930	lsm4	100	94.631	Labrus_bergylta
ENSMZEG00005016420	lsm4	97	83.688	ENSLACG00000015861	LSM4	99	84.138	Latimeria_chalumnae
ENSMZEG00005016420	lsm4	87	89.062	ENSLOCG00000002025	lsm4	100	84.354	Lepisosteus_oculatus
ENSMZEG00005016420	lsm4	60	97.701	ENSLAFG00000017459	LSM4	78	82.927	Loxodonta_africana
ENSMZEG00005016420	lsm4	60	98.864	ENSMFAG00000031194	LSM4	98	78.906	Macaca_fascicularis
ENSMZEG00005016420	lsm4	60	98.864	ENSMMUG00000004405	LSM4	79	83.871	Macaca_mulatta
ENSMZEG00005016420	lsm4	60	98.864	ENSMNEG00000042899	LSM4	98	78.906	Macaca_nemestrina
ENSMZEG00005016420	lsm4	60	98.864	ENSMLEG00000027948	LSM4	98	78.906	Mandrillus_leucophaeus
ENSMZEG00005016420	lsm4	100	94.521	ENSMAMG00000006190	lsm4	100	94.521	Mastacembelus_armatus
ENSMZEG00005016420	lsm4	94	77.698	ENSMGAG00000004976	LSM4	96	81.295	Meleagris_gallopavo
ENSMZEG00005016420	lsm4	68	95.960	ENSMICG00000000222	LSM4	79	83.065	Microcebus_murinus
ENSMZEG00005016420	lsm4	60	95.455	ENSMOCG00000020861	Lsm4	79	81.452	Microtus_ochrogaster
ENSMZEG00005016420	lsm4	50	100.000	ENSMODG00000015044	-	98	76.562	Monodelphis_domestica
ENSMZEG00005016420	lsm4	100	92.466	ENSMALG00000018159	lsm4	100	91.781	Monopterus_albus
ENSMZEG00005016420	lsm4	60	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	Mus_caroli
ENSMZEG00005016420	lsm4	60	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSMZEG00005016420	lsm4	60	95.455	MGP_PahariEiJ_G0021623	Lsm4	79	81.452	Mus_pahari
ENSMZEG00005016420	lsm4	60	95.455	MGP_SPRETEiJ_G0032276	Lsm4	79	81.452	Mus_spretus
ENSMZEG00005016420	lsm4	60	98.864	ENSMPUG00000015589	LSM4	79	83.871	Mustela_putorius_furo
ENSMZEG00005016420	lsm4	60	98.851	ENSMLUG00000004010	LSM4	78	83.740	Myotis_lucifugus
ENSMZEG00005016420	lsm4	60	95.455	ENSNGAG00000008644	Lsm4	79	81.452	Nannospalax_galili
ENSMZEG00005016420	lsm4	74	100.000	ENSNBRG00000022150	lsm4	67	100.000	Neolamprologus_brichardi
ENSMZEG00005016420	lsm4	50	95.890	ENSMEUG00000013229	LSM4	77	77.982	Notamacropus_eugenii
ENSMZEG00005016420	lsm4	53	97.403	ENSOPRG00000005575	LSM4	98	76.378	Ochotona_princeps
ENSMZEG00005016420	lsm4	60	98.864	ENSODEG00000020549	-	99	81.818	Octodon_degus
ENSMZEG00005016420	lsm4	97	59.441	ENSODEG00000011712	-	98	50.704	Octodon_degus
ENSMZEG00005016420	lsm4	60	88.636	ENSODEG00000004519	-	99	70.423	Octodon_degus
ENSMZEG00005016420	lsm4	100	99.320	ENSONIG00000012724	lsm4	100	99.320	Oreochromis_niloticus
ENSMZEG00005016420	lsm4	60	94.505	ENSOANG00000007434	LSM4	97	80.315	Ornithorhynchus_anatinus
ENSMZEG00005016420	lsm4	100	92.466	ENSORLG00000008391	lsm4	100	92.466	Oryzias_latipes
ENSMZEG00005016420	lsm4	100	93.151	ENSORLG00020014829	lsm4	100	93.151	Oryzias_latipes_hni
ENSMZEG00005016420	lsm4	100	92.466	ENSORLG00015010205	lsm4	100	92.466	Oryzias_latipes_hsok
ENSMZEG00005016420	lsm4	100	91.781	ENSOMEG00000003606	lsm4	100	91.781	Oryzias_melastigma
ENSMZEG00005016420	lsm4	67	95.918	ENSOGAG00000027992	LSM4	75	82.927	Otolemur_garnettii
ENSMZEG00005016420	lsm4	60	98.851	ENSOARG00000012553	LSM4	95	71.111	Ovis_aries
ENSMZEG00005016420	lsm4	60	98.864	ENSPPAG00000044045	-	98	78.906	Pan_paniscus
ENSMZEG00005016420	lsm4	60	98.864	ENSPPRG00000018264	LSM4	79	83.871	Panthera_pardus
ENSMZEG00005016420	lsm4	60	98.851	ENSPTIG00000006306	LSM4	79	83.740	Panthera_tigris_altaica
ENSMZEG00005016420	lsm4	60	98.864	ENSPTRG00000031470	LSM4	98	78.906	Pan_troglodytes
ENSMZEG00005016420	lsm4	60	98.864	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSMZEG00005016420	lsm4	100	86.395	ENSPKIG00000006154	lsm4	100	85.714	Paramormyrops_kingsleyae
ENSMZEG00005016420	lsm4	60	100.000	ENSPSIG00000012358	LSM4	96	83.333	Pelodiscus_sinensis
ENSMZEG00005016420	lsm4	60	95.455	ENSPEMG00000001358	Lsm4	79	81.452	Peromyscus_maniculatus_bairdii
ENSMZEG00005016420	lsm4	100	91.096	ENSPFOG00000000570	lsm4	76	91.096	Poecilia_formosa
ENSMZEG00005016420	lsm4	100	90.411	ENSPLAG00000016267	lsm4	100	90.411	Poecilia_latipinna
ENSMZEG00005016420	lsm4	100	91.096	ENSPMEG00000016378	lsm4	100	91.096	Poecilia_mexicana
ENSMZEG00005016420	lsm4	100	91.096	ENSPREG00000011290	lsm4	76	91.096	Poecilia_reticulata
ENSMZEG00005016420	lsm4	60	98.864	ENSPPYG00000009736	LSM4	79	83.871	Pongo_abelii
ENSMZEG00005016420	lsm4	50	97.260	ENSPCAG00000008513	LSM4	77	80.734	Procavia_capensis
ENSMZEG00005016420	lsm4	68	95.960	ENSPCOG00000019837	LSM4	79	83.065	Propithecus_coquereli
ENSMZEG00005016420	lsm4	60	98.864	ENSPVAG00000015383	LSM4	79	83.871	Pteropus_vampyrus
ENSMZEG00005016420	lsm4	100	100.000	ENSPNYG00000016794	lsm4	100	100.000	Pundamilia_nyererei
ENSMZEG00005016420	lsm4	95	89.928	ENSPNAG00000016598	lsm4	100	89.209	Pygocentrus_nattereri
ENSMZEG00005016420	lsm4	60	95.455	ENSRNOG00000019572	Lsm4	79	81.452	Rattus_norvegicus
ENSMZEG00005016420	lsm4	60	98.864	ENSRBIG00000024717	LSM4	98	78.906	Rhinopithecus_bieti
ENSMZEG00005016420	lsm4	60	98.864	ENSRROG00000045706	LSM4	98	78.906	Rhinopithecus_roxellana
ENSMZEG00005016420	lsm4	57	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSMZEG00005016420	lsm4	51	98.649	ENSSBOG00000022455	LSM4	77	81.818	Saimiri_boliviensis_boliviensis
ENSMZEG00005016420	lsm4	60	100.000	ENSSHAG00000011559	LSM4	99	82.517	Sarcophilus_harrisii
ENSMZEG00005016420	lsm4	100	87.075	ENSSFOG00015021067	lsm4	100	86.395	Scleropages_formosus
ENSMZEG00005016420	lsm4	100	80.000	ENSSMAG00000021020	lsm4	100	92.000	Scophthalmus_maximus
ENSMZEG00005016420	lsm4	100	85.030	ENSSDUG00000009588	lsm4	100	85.030	Seriola_dumerili
ENSMZEG00005016420	lsm4	100	84.524	ENSSLDG00000006827	lsm4	100	84.524	Seriola_lalandi_dorsalis
ENSMZEG00005016420	lsm4	60	100.000	ENSSPUG00000010166	LSM4	70	83.740	Sphenodon_punctatus
ENSMZEG00005016420	lsm4	100	93.377	ENSSPAG00000011615	lsm4	100	93.377	Stegastes_partitus
ENSMZEG00005016420	lsm4	60	98.864	ENSSSCG00000034314	LSM4	79	83.871	Sus_scrofa
ENSMZEG00005016420	lsm4	100	92.466	ENSTRUG00000021737	lsm4	100	91.781	Takifugu_rubripes
ENSMZEG00005016420	lsm4	100	89.796	ENSTNIG00000010191	lsm4	100	89.116	Tetraodon_nigroviridis
ENSMZEG00005016420	lsm4	60	98.864	ENSUAMG00000000665	LSM4	91	83.871	Ursus_americanus
ENSMZEG00005016420	lsm4	60	98.864	ENSUMAG00000009013	LSM4	79	83.871	Ursus_maritimus
ENSMZEG00005016420	lsm4	60	98.851	ENSVVUG00000008136	LSM4	56	83.740	Vulpes_vulpes
ENSMZEG00005016420	lsm4	67	96.939	ENSXETG00000024933	lsm4	99	83.099	Xenopus_tropicalis
ENSMZEG00005016420	lsm4	100	91.096	ENSXMAG00000026672	lsm4	76	91.096	Xiphophorus_maculatus