EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005016543 (Gene tree)
Gene ID: -
Gene Symbol: smg5 (1 of many)
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 9269 bases
Position: chrLG11:30149648-30158916
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005022073	PIN_4	PF13638.6	7.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005022807	-	1929	-	ENSMZEP00005022073	642 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005016543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005016543's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005016543	smg5	100	59.125	ENSG00000198952	SMG5	63	58.709	Homo_sapiens
ENSMZEG00005016543	smg5	100	86.957	ENSAPOG00000019690	smg5	62	85.559	Acanthochromis_polyacanthus
ENSMZEG00005016543	smg5	100	57.943	ENSAMEG00000014458	SMG5	64	57.831	Ailuropoda_melanoleuca
ENSMZEG00005016543	smg5	100	88.563	ENSACIG00000001353	smg5	62	87.635	Amphilophus_citrinellus
ENSMZEG00005016543	smg5	96	84.441	ENSAOCG00000019483	smg5	66	78.408	Amphiprion_ocellaris
ENSMZEG00005016543	smg5	100	85.358	ENSAPEG00000022949	smg5	61	84.579	Amphiprion_percula
ENSMZEG00005016543	smg5	100	80.484	ENSATEG00000005348	smg5	63	80.182	Anabas_testudineus
ENSMZEG00005016543	smg5	100	58.504	ENSAPLG00000010263	SMG5	65	58.112	Anas_platyrhynchos
ENSMZEG00005016543	smg5	74	57.172	ENSACAG00000009162	-	97	56.967	Anolis_carolinensis
ENSMZEG00005016543	smg5	100	59.639	ENSANAG00000032899	SMG5	63	58.709	Aotus_nancymaae
ENSMZEG00005016543	smg5	100	94.237	ENSACLG00000009311	smg5	62	94.237	Astatotilapia_calliptera
ENSMZEG00005016543	smg5	100	69.487	ENSAMXG00000024616	smg5	65	69.114	Astyanax_mexicanus
ENSMZEG00005016543	smg5	99	33.898	ENSBTAG00000021747	-	61	33.333	Bos_taurus
ENSMZEG00005016543	smg5	100	59.242	ENSBTAG00000009435	SMG5	63	58.045	Bos_taurus
ENSMZEG00005016543	smg5	100	59.639	ENSCJAG00000005684	SMG5	63	58.709	Callithrix_jacchus
ENSMZEG00005016543	smg5	100	58.589	ENSCAFG00000016839	SMG5	62	58.626	Canis_familiaris
ENSMZEG00005016543	smg5	100	58.589	ENSCAFG00020006061	SMG5	62	58.626	Canis_lupus_dingo
ENSMZEG00005016543	smg5	100	59.758	ENSCHIG00000007709	SMG5	63	58.045	Capra_hircus
ENSMZEG00005016543	smg5	99	33.590	ENSCHIG00000006323	-	62	33.437	Capra_hircus
ENSMZEG00005016543	smg5	100	60.150	ENSTSYG00000004099	SMG5	63	58.921	Carlito_syrichta
ENSMZEG00005016543	smg5	100	54.683	ENSCAPG00000003631	SMG5	73	54.491	Cavia_aperea
ENSMZEG00005016543	smg5	100	59.668	ENSCPOG00000015696	SMG5	63	59.699	Cavia_porcellus
ENSMZEG00005016543	smg5	100	58.824	ENSCCAG00000027409	SMG5	63	58.673	Cebus_capucinus
ENSMZEG00005016543	smg5	100	59.276	ENSCATG00000030539	SMG5	63	58.709	Cercocebus_atys
ENSMZEG00005016543	smg5	100	58.912	ENSCLAG00000003983	SMG5	63	58.832	Chinchilla_lanigera
ENSMZEG00005016543	smg5	100	59.276	ENSCSAG00000002120	SMG5	63	58.709	Chlorocebus_sabaeus
ENSMZEG00005016543	smg5	100	58.910	ENSCPBG00000025848	SMG5	68	58.358	Chrysemys_picta_bellii
ENSMZEG00005016543	smg5	100	55.556	ENSCANG00000029208	SMG5	62	55.007	Colobus_angolensis_palliatus
ENSMZEG00005016543	smg5	100	60.152	ENSCGRG00001006336	Smg5	63	58.511	Cricetulus_griseus_chok1gshd
ENSMZEG00005016543	smg5	100	60.152	ENSCGRG00000005111	Smg5	64	58.511	Cricetulus_griseus_crigri
ENSMZEG00005016543	smg5	100	76.320	ENSCSEG00000014220	smg5	62	76.300	Cynoglossus_semilaevis
ENSMZEG00005016543	smg5	100	80.062	ENSCVAG00000000529	smg5	64	79.595	Cyprinodon_variegatus
ENSMZEG00005016543	smg5	100	67.302	ENSDARG00000041481	smg5	66	67.711	Danio_rerio
ENSMZEG00005016543	smg5	87	60.915	ENSDNOG00000000051	SMG5	55	59.828	Dasypus_novemcinctus
ENSMZEG00005016543	smg5	100	59.098	ENSDORG00000010382	Smg5	63	58.408	Dipodomys_ordii
ENSMZEG00005016543	smg5	89	40.582	ENSEBUG00000003739	smg5	59	40.753	Eptatretus_burgeri
ENSMZEG00005016543	smg5	100	59.848	ENSEASG00005019122	SMG5	63	59.056	Equus_asinus_asinus
ENSMZEG00005016543	smg5	100	59.697	ENSECAG00000001389	SMG5	65	58.904	Equus_caballus
ENSMZEG00005016543	smg5	100	73.692	ENSELUG00000012585	smg5	68	68.385	Esox_lucius
ENSMZEG00005016543	smg5	100	57.470	ENSFCAG00000011783	SMG5	62	58.040	Felis_catus
ENSMZEG00005016543	smg5	54	60.511	ENSFALG00000002560	-	100	60.511	Ficedula_albicollis
ENSMZEG00005016543	smg5	100	58.974	ENSFDAG00000017388	SMG5	64	58.234	Fukomys_damarensis
ENSMZEG00005016543	smg5	100	71.933	ENSFHEG00000013939	smg5	62	70.661	Fundulus_heteroclitus
ENSMZEG00005016543	smg5	100	68.733	ENSGMOG00000007310	smg5	65	69.452	Gadus_morhua
ENSMZEG00005016543	smg5	100	58.580	ENSGALG00000029918	-	66	58.806	Gallus_gallus
ENSMZEG00005016543	smg5	90	87.616	ENSGAFG00000021691	smg5	61	91.234	Gambusia_affinis
ENSMZEG00005016543	smg5	100	75.034	ENSGACG00000013142	smg5	65	74.898	Gasterosteus_aculeatus
ENSMZEG00005016543	smg5	100	60.058	ENSGAGG00000016131	SMG5	64	58.866	Gopherus_agassizii
ENSMZEG00005016543	smg5	100	59.639	ENSGGOG00000010932	SMG5	63	58.408	Gorilla_gorilla
ENSMZEG00005016543	smg5	100	93.045	ENSHBUG00000008654	smg5	62	93.972	Haplochromis_burtoni
ENSMZEG00005016543	smg5	100	58.974	ENSHGLG00000019152	SMG5	63	58.383	Heterocephalus_glaber_female
ENSMZEG00005016543	smg5	85	59.043	ENSHGLG00100015948	SMG5	59	57.793	Heterocephalus_glaber_male
ENSMZEG00005016543	smg5	82	90.000	ENSHCOG00000010229	smg5	55	90.000	Hippocampus_comes
ENSMZEG00005016543	smg5	100	67.490	ENSIPUG00000006624	Smg5	66	68.094	Ictalurus_punctatus
ENSMZEG00005016543	smg5	100	59.427	ENSSTOG00000001780	SMG5	63	58.921	Ictidomys_tridecemlineatus
ENSMZEG00005016543	smg5	100	58.060	ENSJJAG00000022763	Smg5	63	59.070	Jaculus_jaculus
ENSMZEG00005016543	smg5	100	74.764	ENSKMAG00000014586	smg5	66	75.067	Kryptolebias_marmoratus
ENSMZEG00005016543	smg5	100	81.692	ENSLBEG00000002145	smg5	61	81.385	Labrus_bergylta
ENSMZEG00005016543	smg5	100	52.655	ENSLACG00000010521	SMG5	64	52.276	Latimeria_chalumnae
ENSMZEG00005016543	smg5	88	59.835	ENSLOCG00000008380	smg5	65	56.694	Lepisosteus_oculatus
ENSMZEG00005016543	smg5	100	58.485	ENSLAFG00000006241	SMG5	63	58.877	Loxodonta_africana
ENSMZEG00005016543	smg5	100	59.276	ENSMFAG00000045357	SMG5	63	58.709	Macaca_fascicularis
ENSMZEG00005016543	smg5	100	60.583	ENSMMUG00000000090	SMG5	63	58.709	Macaca_mulatta
ENSMZEG00005016543	smg5	100	59.125	ENSMNEG00000044425	SMG5	63	58.559	Macaca_nemestrina
ENSMZEG00005016543	smg5	100	56.972	ENSMLEG00000041192	SMG5	64	56.418	Mandrillus_leucophaeus
ENSMZEG00005016543	smg5	100	76.383	ENSMAMG00000010683	smg5	70	75.439	Mastacembelus_armatus
ENSMZEG00005016543	smg5	100	90.824	ENSMZEG00005015815	smg5	62	90.824	Maylandia_zebra
ENSMZEG00005016543	smg5	100	59.276	ENSMAUG00000010381	Smg5	63	58.663	Mesocricetus_auratus
ENSMZEG00005016543	smg5	100	59.337	ENSMICG00000002257	SMG5	63	58.559	Microcebus_murinus
ENSMZEG00005016543	smg5	100	59.153	ENSMOCG00000016590	Smg5	63	57.704	Microtus_ochrogaster
ENSMZEG00005016543	smg5	100	74.932	ENSMMOG00000017199	smg5	66	74.521	Mola_mola
ENSMZEG00005016543	smg5	80	56.530	ENSMODG00000016901	SMG5	56	56.747	Monodelphis_domestica
ENSMZEG00005016543	smg5	100	76.757	ENSMALG00000010375	smg5	66	75.270	Monopterus_albus
ENSMZEG00005016543	smg5	100	59.789	MGP_CAROLIEiJ_G0025163	Smg5	63	58.548	Mus_caroli
ENSMZEG00005016543	smg5	100	59.789	ENSMUSG00000001415	Smg5	63	58.699	Mus_musculus
ENSMZEG00005016543	smg5	100	59.910	MGP_PahariEiJ_G0026606	Smg5	63	59.036	Mus_pahari
ENSMZEG00005016543	smg5	100	59.337	MGP_SPRETEiJ_G0026104	Smg5	63	58.371	Mus_spretus
ENSMZEG00005016543	smg5	100	58.359	ENSMPUG00000004546	SMG5	67	57.640	Mustela_putorius_furo
ENSMZEG00005016543	smg5	100	58.824	ENSMLUG00000008518	SMG5	63	59.276	Myotis_lucifugus
ENSMZEG00005016543	smg5	70	37.719	ENSNGAG00000012101	-	61	32.974	Nannospalax_galili
ENSMZEG00005016543	smg5	100	58.283	ENSNGAG00000020706	Smg5	63	58.408	Nannospalax_galili
ENSMZEG00005016543	smg5	95	81.250	ENSNBRG00000004332	smg5	57	81.250	Neolamprologus_brichardi
ENSMZEG00005016543	smg5	100	59.394	ENSNLEG00000012439	SMG5	63	58.559	Nomascus_leucogenys
ENSMZEG00005016543	smg5	100	56.175	ENSMEUG00000012834	SMG5	63	56.907	Notamacropus_eugenii
ENSMZEG00005016543	smg5	100	57.919	ENSOPRG00000009152	SMG5	63	57.635	Ochotona_princeps
ENSMZEG00005016543	smg5	100	58.735	ENSODEG00000012237	SMG5	63	60.090	Octodon_degus
ENSMZEG00005016543	smg5	100	82.075	ENSONIG00000008632	smg5	66	84.097	Oreochromis_niloticus
ENSMZEG00005016543	smg5	100	58.220	ENSOCUG00000012886	SMG5	64	58.584	Oryctolagus_cuniculus
ENSMZEG00005016543	smg5	100	72.490	ENSORLG00000016239	smg5	65	74.348	Oryzias_latipes
ENSMZEG00005016543	smg5	100	74.540	ENSORLG00020013127	smg5	65	74.313	Oryzias_latipes_hni
ENSMZEG00005016543	smg5	100	75.115	ENSORLG00015019014	smg5	65	73.901	Oryzias_latipes_hsok
ENSMZEG00005016543	smg5	72	67.153	ENSOMEG00000021330	smg5	56	67.273	Oryzias_melastigma
ENSMZEG00005016543	smg5	100	58.522	ENSOGAG00000004966	SMG5	63	58.182	Otolemur_garnettii
ENSMZEG00005016543	smg5	99	33.590	ENSOARG00000011963	-	62	33.437	Ovis_aries
ENSMZEG00005016543	smg5	100	59.242	ENSOARG00000005778	SMG5	63	58.045	Ovis_aries
ENSMZEG00005016543	smg5	100	59.125	ENSPPAG00000011996	SMG5	63	58.709	Pan_paniscus
ENSMZEG00005016543	smg5	100	57.557	ENSPPRG00000011901	SMG5	64	58.129	Panthera_pardus
ENSMZEG00005016543	smg5	99	54.375	ENSPTIG00000007892	SMG5	62	54.375	Panthera_tigris_altaica
ENSMZEG00005016543	smg5	100	59.125	ENSPTRG00000049282	-	63	58.709	Pan_troglodytes
ENSMZEG00005016543	smg5	100	59.125	ENSPTRG00000023925	SMG5	63	58.709	Pan_troglodytes
ENSMZEG00005016543	smg5	100	59.276	ENSPANG00000011201	SMG5	63	58.709	Papio_anubis
ENSMZEG00005016543	smg5	100	70.303	ENSPKIG00000009402	smg5	62	70.472	Paramormyrops_kingsleyae
ENSMZEG00005016543	smg5	100	60.148	ENSPSIG00000015198	SMG5	64	59.431	Pelodiscus_sinensis
ENSMZEG00005016543	smg5	100	63.521	ENSPMGG00000010465	smg5	64	63.099	Periophthalmus_magnuspinnatus
ENSMZEG00005016543	smg5	100	60.000	ENSPEMG00000001819	Smg5	63	58.359	Peromyscus_maniculatus_bairdii
ENSMZEG00005016543	smg5	81	45.355	ENSPMAG00000000410	smg5	64	42.773	Petromyzon_marinus
ENSMZEG00005016543	smg5	100	58.094	ENSPCIG00000018938	SMG5	63	58.595	Phascolarctos_cinereus
ENSMZEG00005016543	smg5	100	74.185	ENSPFOG00000010191	smg5	65	74.185	Poecilia_formosa
ENSMZEG00005016543	smg5	100	74.049	ENSPLAG00000009332	smg5	65	74.457	Poecilia_latipinna
ENSMZEG00005016543	smg5	100	81.011	ENSPMEG00000014105	smg5	63	81.011	Poecilia_mexicana
ENSMZEG00005016543	smg5	100	74.422	ENSPREG00000017713	smg5	68	74.864	Poecilia_reticulata
ENSMZEG00005016543	smg5	100	59.125	ENSPPYG00000000723	SMG5	63	58.709	Pongo_abelii
ENSMZEG00005016543	smg5	79	79.444	ENSPCAG00000008412	SMG5	53	79.444	Procavia_capensis
ENSMZEG00005016543	smg5	100	59.488	ENSPCOG00000004741	SMG5	64	58.636	Propithecus_coquereli
ENSMZEG00005016543	smg5	100	55.656	ENSPVAG00000016748	SMG5	63	56.970	Pteropus_vampyrus
ENSMZEG00005016543	smg5	100	86.296	ENSPNYG00000013397	smg5	68	86.296	Pundamilia_nyererei
ENSMZEG00005016543	smg5	100	69.668	ENSPNAG00000028363	smg5	65	69.391	Pygocentrus_nattereri
ENSMZEG00005016543	smg5	100	60.514	ENSRNOG00000019590	Smg5	63	58.245	Rattus_norvegicus
ENSMZEG00005016543	smg5	100	59.276	ENSRBIG00000027428	SMG5	63	58.709	Rhinopithecus_bieti
ENSMZEG00005016543	smg5	100	59.125	ENSRROG00000030035	SMG5	63	58.559	Rhinopithecus_roxellana
ENSMZEG00005016543	smg5	100	59.125	ENSSBOG00000033339	SMG5	63	58.709	Saimiri_boliviensis_boliviensis
ENSMZEG00005016543	smg5	100	57.100	ENSSHAG00000014163	SMG5	64	57.698	Sarcophilus_harrisii
ENSMZEG00005016543	smg5	100	72.824	ENSSFOG00015024175	smg5	62	72.965	Scleropages_formosus
ENSMZEG00005016543	smg5	100	74.966	ENSSMAG00000013059	smg5	68	76.081	Scophthalmus_maximus
ENSMZEG00005016543	smg5	100	77.927	ENSSDUG00000007122	smg5	66	77.554	Seriola_dumerili
ENSMZEG00005016543	smg5	100	81.069	ENSSLDG00000011418	smg5	66	77.285	Seriola_lalandi_dorsalis
ENSMZEG00005016543	smg5	79	70.968	ENSSARG00000012484	SMG5	59	56.206	Sorex_araneus
ENSMZEG00005016543	smg5	100	58.443	ENSSPUG00000002260	SMG5	68	58.565	Sphenodon_punctatus
ENSMZEG00005016543	smg5	100	84.839	ENSSPAG00000014266	smg5	61	84.985	Stegastes_partitus
ENSMZEG00005016543	smg5	92	50.170	ENSSSCG00000039308	-	63	47.619	Sus_scrofa
ENSMZEG00005016543	smg5	100	59.276	ENSSSCG00000006490	-	67	58.788	Sus_scrofa
ENSMZEG00005016543	smg5	100	61.252	ENSTGUG00000003748	-	63	60.178	Taeniopygia_guttata
ENSMZEG00005016543	smg5	53	61.032	ENSTGUG00000003744	-	100	61.032	Taeniopygia_guttata
ENSMZEG00005016543	smg5	100	74.251	ENSTRUG00000012580	smg5	63	74.363	Takifugu_rubripes
ENSMZEG00005016543	smg5	100	76.126	ENSTNIG00000010303	smg5	63	74.775	Tetraodon_nigroviridis
ENSMZEG00005016543	smg5	100	55.825	ENSTTRG00000001401	SMG5	63	55.909	Tursiops_truncatus
ENSMZEG00005016543	smg5	100	58.015	ENSUAMG00000013721	SMG5	62	58.094	Ursus_americanus
ENSMZEG00005016543	smg5	100	54.351	ENSUMAG00000018041	SMG5	63	54.504	Ursus_maritimus
ENSMZEG00005016543	smg5	90	71.782	ENSVPAG00000009446	SMG5	64	53.030	Vicugna_pacos
ENSMZEG00005016543	smg5	100	59.422	ENSVVUG00000005887	SMG5	62	58.742	Vulpes_vulpes
ENSMZEG00005016543	smg5	99	57.949	ENSXETG00000033791	SMG5	81	56.761	Xenopus_tropicalis
ENSMZEG00005016543	smg5	70	93.956	ENSXCOG00000004379	smg5	56	93.956	Xiphophorus_couchianus
ENSMZEG00005016543	smg5	100	78.473	ENSXMAG00000013499	smg5	62	79.077	Xiphophorus_maculatus