EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005018545 (Gene tree)
Gene ID: 101476519
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 10882 bases
Position: chrLG13:29675864-29686745
Accession: 101476519
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005024832	RNA_pol_A_bac	PF01000.26	2.9e-31	1	1
ENSMZEP00005024837	RNA_pol_A_bac	PF01000.26	3.1e-27	1	1
ENSMZEP00005024837	RNA_pol_L	PF01193.24	1.4e-22	1	1
ENSMZEP00005024832	RNA_pol_L	PF01193.24	2.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005025641	-	2494	XM_004572056	ENSMZEP00005024832	351 (aa)	XP_004572113	UPI000329A7F2
ENSMZET00005025646	-	894	-	ENSMZEP00005024837	297 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005018545's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03020	RNA polymerase	KEGG
mze04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005018545's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005018545	polr1c	100	72.727	ENSG00000171453	POLR1C	100	75.000	Homo_sapiens
ENSMZEG00005018545	polr1c	100	89.459	ENSAPOG00000024356	polr1c	100	89.459	Acanthochromis_polyacanthus
ENSMZEG00005018545	polr1c	99	72.493	ENSAMEG00000012205	POLR1C	99	71.920	Ailuropoda_melanoleuca
ENSMZEG00005018545	polr1c	94	81.269	ENSACIG00000016268	polr1c	91	81.269	Amphilophus_citrinellus
ENSMZEG00005018545	polr1c	100	88.889	ENSAOCG00000011687	polr1c	97	88.889	Amphiprion_ocellaris
ENSMZEG00005018545	polr1c	100	89.744	ENSAPEG00000002433	polr1c	100	89.744	Amphiprion_percula
ENSMZEG00005018545	polr1c	99	91.667	ENSATEG00000005985	polr1c	99	91.667	Anabas_testudineus
ENSMZEG00005018545	polr1c	87	72.368	ENSAPLG00000002908	POLR1C	100	71.711	Anas_platyrhynchos
ENSMZEG00005018545	polr1c	88	72.492	ENSACAG00000009764	POLR1C	86	72.876	Anolis_carolinensis
ENSMZEG00005018545	polr1c	100	73.064	ENSANAG00000025805	POLR1C	100	73.064	Aotus_nancymaae
ENSMZEG00005018545	polr1c	100	99.715	ENSACLG00000006573	polr1c	100	99.715	Astatotilapia_calliptera
ENSMZEG00005018545	polr1c	59	30.220	ENSACLG00000004854	polr2c	80	30.392	Astatotilapia_calliptera
ENSMZEG00005018545	polr1c	100	83.165	ENSAMXG00000012062	polr1c	100	83.165	Astyanax_mexicanus
ENSMZEG00005018545	polr1c	99	73.066	ENSBTAG00000018969	POLR1C	99	72.779	Bos_taurus
ENSMZEG00005018545	polr1c	92	45.994	WBGene00019275	rpac-40	92	45.562	Caenorhabditis_elegans
ENSMZEG00005018545	polr1c	99	72.203	ENSCJAG00000005594	POLR1C	99	72.203	Callithrix_jacchus
ENSMZEG00005018545	polr1c	99	71.920	ENSCAFG00000001872	POLR1C	99	71.347	Canis_familiaris
ENSMZEG00005018545	polr1c	59	30.220	ENSCAFG00020007660	POLR2C	50	30.220	Canis_lupus_dingo
ENSMZEG00005018545	polr1c	99	71.920	ENSCAFG00020012018	POLR1C	99	71.347	Canis_lupus_dingo
ENSMZEG00005018545	polr1c	99	73.066	ENSCHIG00000004352	POLR1C	99	72.493	Capra_hircus
ENSMZEG00005018545	polr1c	99	72.881	ENSTSYG00000011921	POLR1C	99	72.881	Carlito_syrichta
ENSMZEG00005018545	polr1c	86	73.267	ENSCAPG00000015364	POLR1C	88	72.607	Cavia_aperea
ENSMZEG00005018545	polr1c	100	73.219	ENSCPOG00000038098	POLR1C	100	72.650	Cavia_porcellus
ENSMZEG00005018545	polr1c	99	72.542	ENSCCAG00000020169	POLR1C	99	72.542	Cebus_capucinus
ENSMZEG00005018545	polr1c	100	72.727	ENSCATG00000044045	POLR1C	100	72.727	Cercocebus_atys
ENSMZEG00005018545	polr1c	98	73.837	ENSCLAG00000009266	POLR1C	98	73.256	Chinchilla_lanigera
ENSMZEG00005018545	polr1c	100	71.510	ENSCSAG00000011913	POLR1C	100	71.225	Chlorocebus_sabaeus
ENSMZEG00005018545	polr1c	60	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSMZEG00005018545	polr1c	100	75.783	ENSCPBG00000025203	POLR1C	100	75.214	Chrysemys_picta_bellii
ENSMZEG00005018545	polr1c	98	53.913	ENSCING00000003563	-	99	53.448	Ciona_intestinalis
ENSMZEG00005018545	polr1c	100	73.064	ENSCANG00000043167	POLR1C	100	73.064	Colobus_angolensis_palliatus
ENSMZEG00005018545	polr1c	99	71.633	ENSCGRG00001017533	Polr1c	99	71.060	Cricetulus_griseus_chok1gshd
ENSMZEG00005018545	polr1c	86	72.277	ENSCGRG00000013225	Polr1c	100	71.617	Cricetulus_griseus_crigri
ENSMZEG00005018545	polr1c	100	86.040	ENSCSEG00000018097	polr1c	100	85.185	Cynoglossus_semilaevis
ENSMZEG00005018545	polr1c	60	91.509	ENSCVAG00000005684	polr1c	85	91.509	Cyprinodon_variegatus
ENSMZEG00005018545	polr1c	100	81.197	ENSDARG00000039400	polr1c	96	80.342	Danio_rerio
ENSMZEG00005018545	polr1c	98	73.256	ENSDNOG00000042693	POLR1C	98	72.674	Dasypus_novemcinctus
ENSMZEG00005018545	polr1c	99	72.779	ENSDORG00000000429	Polr1c	99	72.206	Dipodomys_ordii
ENSMZEG00005018545	polr1c	90	51.735	FBgn0031657	CG3756	93	51.104	Drosophila_melanogaster
ENSMZEG00005018545	polr1c	98	68.605	ENSETEG00000010807	POLR1C	98	68.314	Echinops_telfairi
ENSMZEG00005018545	polr1c	97	68.235	ENSEBUG00000013725	polr1c	98	67.151	Eptatretus_burgeri
ENSMZEG00005018545	polr1c	99	71.920	ENSEASG00005003338	POLR1C	99	71.347	Equus_asinus_asinus
ENSMZEG00005018545	polr1c	99	72.881	ENSECAG00000023516	POLR1C	99	72.881	Equus_caballus
ENSMZEG00005018545	polr1c	99	73.639	ENSEEUG00000005471	POLR1C	99	73.066	Erinaceus_europaeus
ENSMZEG00005018545	polr1c	100	83.838	ENSELUG00000013027	polr1c	100	83.838	Esox_lucius
ENSMZEG00005018545	polr1c	99	73.559	ENSFCAG00000009735	POLR1C	99	73.559	Felis_catus
ENSMZEG00005018545	polr1c	93	72.477	ENSFALG00000012111	POLR1C	100	71.865	Ficedula_albicollis
ENSMZEG00005018545	polr1c	99	72.493	ENSFDAG00000008428	POLR1C	99	71.920	Fukomys_damarensis
ENSMZEG00005018545	polr1c	57	84.884	ENSFHEG00000013867	-	84	87.791	Fundulus_heteroclitus
ENSMZEG00005018545	polr1c	100	88.889	ENSFHEG00000000262	polr1c	100	88.889	Fundulus_heteroclitus
ENSMZEG00005018545	polr1c	93	82.927	ENSGMOG00000013878	polr1c	100	82.012	Gadus_morhua
ENSMZEG00005018545	polr1c	100	72.934	ENSGALG00000010349	POLR1C	100	72.365	Gallus_gallus
ENSMZEG00005018545	polr1c	100	89.174	ENSGAFG00000010153	polr1c	100	89.174	Gambusia_affinis
ENSMZEG00005018545	polr1c	100	85.755	ENSGACG00000002453	polr1c	100	85.755	Gasterosteus_aculeatus
ENSMZEG00005018545	polr1c	100	74.929	ENSGAGG00000010640	POLR1C	100	74.359	Gopherus_agassizii
ENSMZEG00005018545	polr1c	100	72.727	ENSGGOG00000010903	POLR1C	100	72.727	Gorilla_gorilla
ENSMZEG00005018545	polr1c	100	89.174	ENSHBUG00000017816	polr1c	100	88.319	Haplochromis_burtoni
ENSMZEG00005018545	polr1c	59	30.220	ENSHBUG00000023040	polr2c	80	30.392	Haplochromis_burtoni
ENSMZEG00005018545	polr1c	99	72.206	ENSHGLG00000019441	POLR1C	99	71.633	Heterocephalus_glaber_female
ENSMZEG00005018545	polr1c	99	72.493	ENSHGLG00100005970	POLR1C	99	71.920	Heterocephalus_glaber_male
ENSMZEG00005018545	polr1c	98	84.058	ENSHCOG00000002179	polr1c	99	84.058	Hippocampus_comes
ENSMZEG00005018545	polr1c	99	82.709	ENSIPUG00000024464	polr1c	99	82.133	Ictalurus_punctatus
ENSMZEG00005018545	polr1c	99	72.779	ENSSTOG00000010631	POLR1C	99	72.206	Ictidomys_tridecemlineatus
ENSMZEG00005018545	polr1c	99	72.206	ENSJJAG00000023110	Polr1c	99	71.633	Jaculus_jaculus
ENSMZEG00005018545	polr1c	100	88.034	ENSKMAG00000014305	polr1c	100	87.205	Kryptolebias_marmoratus
ENSMZEG00005018545	polr1c	100	90.313	ENSLBEG00000014925	polr1c	100	90.313	Labrus_bergylta
ENSMZEG00005018545	polr1c	95	59.104	ENSLACG00000012567	POLR1C	98	58.507	Latimeria_chalumnae
ENSMZEG00005018545	polr1c	100	79.202	ENSLOCG00000016710	polr1c	96	78.632	Lepisosteus_oculatus
ENSMZEG00005018545	polr1c	59	30.220	ENSLAFG00000027230	POLR2C	62	30.220	Loxodonta_africana
ENSMZEG00005018545	polr1c	87	73.443	ENSLAFG00000026248	POLR1C	100	72.787	Loxodonta_africana
ENSMZEG00005018545	polr1c	100	72.391	ENSMFAG00000046295	POLR1C	100	72.391	Macaca_fascicularis
ENSMZEG00005018545	polr1c	100	72.391	ENSMMUG00000015192	POLR1C	100	72.391	Macaca_mulatta
ENSMZEG00005018545	polr1c	100	72.391	ENSMNEG00000028073	POLR1C	100	72.391	Macaca_nemestrina
ENSMZEG00005018545	polr1c	100	72.391	ENSMLEG00000034818	POLR1C	100	72.391	Mandrillus_leucophaeus
ENSMZEG00005018545	polr1c	100	90.598	ENSMAMG00000008700	polr1c	100	90.598	Mastacembelus_armatus
ENSMZEG00005018545	polr1c	84	69.153	ENSMGAG00000011020	POLR1C	100	68.475	Meleagris_gallopavo
ENSMZEG00005018545	polr1c	99	71.633	ENSMAUG00000014329	Polr1c	99	71.060	Mesocricetus_auratus
ENSMZEG00005018545	polr1c	99	71.864	ENSMICG00000005027	POLR1C	99	71.864	Microcebus_murinus
ENSMZEG00005018545	polr1c	99	72.206	ENSMOCG00000017549	Polr1c	99	71.633	Microtus_ochrogaster
ENSMZEG00005018545	polr1c	100	84.512	ENSMMOG00000005380	polr1c	100	84.512	Mola_mola
ENSMZEG00005018545	polr1c	84	73.898	ENSMODG00000018964	POLR1C	100	73.559	Monodelphis_domestica
ENSMZEG00005018545	polr1c	100	90.909	ENSMALG00000011711	polr1c	100	90.909	Monopterus_albus
ENSMZEG00005018545	polr1c	99	63.324	MGP_CAROLIEiJ_G0021662	Polr1c	100	70.076	Mus_caroli
ENSMZEG00005018545	polr1c	99	72.206	ENSMUSG00000067148	Polr1c	98	74.257	Mus_musculus
ENSMZEG00005018545	polr1c	99	72.493	MGP_PahariEiJ_G0020654	Polr1c	98	75.248	Mus_pahari
ENSMZEG00005018545	polr1c	99	72.206	MGP_SPRETEiJ_G0022574	Polr1c	98	74.257	Mus_spretus
ENSMZEG00005018545	polr1c	99	71.920	ENSMPUG00000012916	POLR1C	91	71.347	Mustela_putorius_furo
ENSMZEG00005018545	polr1c	99	72.206	ENSMLUG00000017751	POLR1C	99	71.633	Myotis_lucifugus
ENSMZEG00005018545	polr1c	99	72.779	ENSNGAG00000023487	Polr1c	100	72.542	Nannospalax_galili
ENSMZEG00005018545	polr1c	100	98.291	ENSNBRG00000018742	polr1c	100	98.291	Neolamprologus_brichardi
ENSMZEG00005018545	polr1c	100	72.080	ENSNLEG00000004035	POLR1C	100	71.510	Nomascus_leucogenys
ENSMZEG00005018545	polr1c	98	63.529	ENSMEUG00000006778	POLR1C	98	63.529	Notamacropus_eugenii
ENSMZEG00005018545	polr1c	80	69.198	ENSOPRG00000000145	POLR1C	99	70.849	Ochotona_princeps
ENSMZEG00005018545	polr1c	62	68.950	ENSODEG00000017109	-	97	69.340	Octodon_degus
ENSMZEG00005018545	polr1c	100	72.934	ENSODEG00000015831	-	100	72.365	Octodon_degus
ENSMZEG00005018545	polr1c	100	98.291	ENSONIG00000013133	polr1c	98	98.291	Oreochromis_niloticus
ENSMZEG00005018545	polr1c	99	70.487	ENSOANG00000003043	POLR1C	99	69.914	Ornithorhynchus_anatinus
ENSMZEG00005018545	polr1c	99	71.347	ENSOCUG00000005504	POLR1C	99	70.774	Oryctolagus_cuniculus
ENSMZEG00005018545	polr1c	100	83.476	ENSORLG00000019743	polr1c	100	83.476	Oryzias_latipes
ENSMZEG00005018545	polr1c	76	68.519	ENSORLG00020005555	polr1c	81	68.519	Oryzias_latipes_hni
ENSMZEG00005018545	polr1c	100	84.330	ENSORLG00020006489	POLR1C	100	84.330	Oryzias_latipes_hni
ENSMZEG00005018545	polr1c	100	83.761	ENSORLG00015013322	polr1c	100	83.761	Oryzias_latipes_hsok
ENSMZEG00005018545	polr1c	100	84.615	ENSOMEG00000016527	polr1c	100	84.615	Oryzias_melastigma
ENSMZEG00005018545	polr1c	99	72.779	ENSOGAG00000016318	POLR1C	99	71.920	Otolemur_garnettii
ENSMZEG00005018545	polr1c	99	72.779	ENSOARG00000007503	POLR1C	99	72.493	Ovis_aries
ENSMZEG00005018545	polr1c	100	72.727	ENSPPAG00000043678	POLR1C	100	72.727	Pan_paniscus
ENSMZEG00005018545	polr1c	99	73.559	ENSPPRG00000009760	POLR1C	99	73.559	Panthera_pardus
ENSMZEG00005018545	polr1c	99	73.559	ENSPTIG00000014813	POLR1C	99	73.559	Panthera_tigris_altaica
ENSMZEG00005018545	polr1c	100	72.727	ENSPTRG00000018202	POLR1C	100	72.727	Pan_troglodytes
ENSMZEG00005018545	polr1c	100	72.727	ENSPANG00000009025	POLR1C	100	72.727	Papio_anubis
ENSMZEG00005018545	polr1c	100	81.818	ENSPKIG00000009858	polr1c	100	81.818	Paramormyrops_kingsleyae
ENSMZEG00005018545	polr1c	100	75.214	ENSPSIG00000012580	POLR1C	94	74.644	Pelodiscus_sinensis
ENSMZEG00005018545	polr1c	100	87.205	ENSPMGG00000012121	polr1c	100	87.205	Periophthalmus_magnuspinnatus
ENSMZEG00005018545	polr1c	99	71.347	ENSPEMG00000006970	Polr1c	99	70.774	Peromyscus_maniculatus_bairdii
ENSMZEG00005018545	polr1c	59	33.516	ENSPMAG00000004827	polr2c	88	31.797	Petromyzon_marinus
ENSMZEG00005018545	polr1c	99	70.857	ENSPMAG00000005560	polr1c	99	70.571	Petromyzon_marinus
ENSMZEG00005018545	polr1c	98	75.172	ENSPCIG00000028137	POLR1C	98	75.172	Phascolarctos_cinereus
ENSMZEG00005018545	polr1c	100	89.744	ENSPFOG00000014357	polr1c	98	89.744	Poecilia_formosa
ENSMZEG00005018545	polr1c	100	89.744	ENSPFOG00000014342	POLR1C	100	89.744	Poecilia_formosa
ENSMZEG00005018545	polr1c	60	90.566	ENSPLAG00000004111	polr1c	99	82.011	Poecilia_latipinna
ENSMZEG00005018545	polr1c	100	89.744	ENSPMEG00000008420	polr1c	100	89.744	Poecilia_mexicana
ENSMZEG00005018545	polr1c	100	89.744	ENSPMEG00000011877	-	100	89.744	Poecilia_mexicana
ENSMZEG00005018545	polr1c	100	88.319	ENSPREG00000007985	polr1c	100	88.034	Poecilia_reticulata
ENSMZEG00005018545	polr1c	100	71.795	ENSPPYG00000016645	POLR1C	100	71.225	Pongo_abelii
ENSMZEG00005018545	polr1c	99	71.864	ENSPCOG00000024628	POLR1C	99	71.864	Propithecus_coquereli
ENSMZEG00005018545	polr1c	99	66.857	ENSPVAG00000005689	POLR1C	99	66.857	Pteropus_vampyrus
ENSMZEG00005018545	polr1c	100	99.430	ENSPNYG00000003620	polr1c	100	99.430	Pundamilia_nyererei
ENSMZEG00005018545	polr1c	100	84.046	ENSPNAG00000008443	polr1c	100	83.476	Pygocentrus_nattereri
ENSMZEG00005018545	polr1c	99	71.920	ENSRNOG00000019079	Polr1c	99	71.347	Rattus_norvegicus
ENSMZEG00005018545	polr1c	100	73.064	ENSRBIG00000007155	POLR1C	100	73.064	Rhinopithecus_bieti
ENSMZEG00005018545	polr1c	100	73.064	ENSRROG00000000257	POLR1C	100	73.064	Rhinopithecus_roxellana
ENSMZEG00005018545	polr1c	92	48.758	YPR110C	RPC40	95	49.068	Saccharomyces_cerevisiae
ENSMZEG00005018545	polr1c	99	72.542	ENSSBOG00000025735	POLR1C	99	72.542	Saimiri_boliviensis_boliviensis
ENSMZEG00005018545	polr1c	98	66.570	ENSSHAG00000014456	POLR1C	98	66.279	Sarcophilus_harrisii
ENSMZEG00005018545	polr1c	100	82.906	ENSSFOG00015019860	polr1c	100	82.336	Scleropages_formosus
ENSMZEG00005018545	polr1c	100	89.459	ENSSMAG00000018865	polr1c	100	88.319	Scophthalmus_maximus
ENSMZEG00005018545	polr1c	100	92.023	ENSSDUG00000015745	polr1c	100	91.582	Seriola_dumerili
ENSMZEG00005018545	polr1c	100	92.023	ENSSLDG00000018285	polr1c	100	91.582	Seriola_lalandi_dorsalis
ENSMZEG00005018545	polr1c	98	72.174	ENSSPUG00000011822	POLR1C	99	71.594	Sphenodon_punctatus
ENSMZEG00005018545	polr1c	100	89.744	ENSSPAG00000022369	polr1c	100	89.744	Stegastes_partitus
ENSMZEG00005018545	polr1c	99	72.206	ENSSSCG00000028007	POLR1C	98	71.633	Sus_scrofa
ENSMZEG00005018545	polr1c	96	73.214	ENSTGUG00000009159	POLR1C	99	72.619	Taeniopygia_guttata
ENSMZEG00005018545	polr1c	100	84.900	ENSTRUG00000006264	polr1c	100	84.900	Takifugu_rubripes
ENSMZEG00005018545	polr1c	51	70.787	ENSTBEG00000002254	POLR1C	100	70.787	Tupaia_belangeri
ENSMZEG00005018545	polr1c	76	69.663	ENSTTRG00000006344	POLR1C	76	68.914	Tursiops_truncatus
ENSMZEG00005018545	polr1c	99	72.493	ENSUAMG00000025602	POLR1C	99	71.920	Ursus_americanus
ENSMZEG00005018545	polr1c	99	72.493	ENSUMAG00000005938	POLR1C	99	71.920	Ursus_maritimus
ENSMZEG00005018545	polr1c	99	72.881	ENSVVUG00000028922	POLR1C	99	72.881	Vulpes_vulpes
ENSMZEG00005018545	polr1c	98	68.300	ENSXETG00000010882	polr1c	99	67.052	Xenopus_tropicalis
ENSMZEG00005018545	polr1c	100	88.319	ENSXCOG00000014185	polr1c	100	87.464	Xiphophorus_couchianus
ENSMZEG00005018545	polr1c	100	89.174	ENSXMAG00000015076	polr1c	100	89.174	Xiphophorus_maculatus