EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005019071 (Gene tree)
Gene ID: 101487543
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 9014 bases
Position: chrLG10:14095367-14104380
Accession: 101487543
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005025563	RRM_1	PF00076.22	1.8e-33	1	2
ENSMZEP00005025563	RRM_1	PF00076.22	1.8e-33	2	2
ENSMZEP00005025557	RRM_1	PF00076.22	1.8e-33	1	2
ENSMZEP00005025557	RRM_1	PF00076.22	1.8e-33	2	2
ENSMZEP00005025553	RRM_1	PF00076.22	1.5e-31	1	2
ENSMZEP00005025553	RRM_1	PF00076.22	1.5e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005026385	-	2015	-	ENSMZEP00005025557	268 (aa)	-	-
ENSMZET00005026391	-	1167	XM_024803967	ENSMZEP00005025563	259 (aa)	XP_024659735	UPI000329E23D
ENSMZET00005026381	-	1031	-	ENSMZEP00005025553	190 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005019071's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG
mze05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005019071's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005019071	-	99	94.737	ENSACIG00000002623	-	98	94.271	Amphilophus_citrinellus
ENSMZEG00005019071	-	100	99.259	ENSACLG00000021693	-	100	99.259	Astatotilapia_calliptera
ENSMZEG00005019071	-	98	84.043	ENSACLG00000005676	-	78	84.422	Astatotilapia_calliptera
ENSMZEG00005019071	-	94	59.563	WBGene00004700	rsp-3	75	63.590	Caenorhabditis_elegans
ENSMZEG00005019071	-	66	62.698	ENSCING00000000257	-	75	62.044	Ciona_intestinalis
ENSMZEG00005019071	-	92	69.318	ENSCING00000007375	-	76	68.617	Ciona_intestinalis
ENSMZEG00005019071	-	69	55.307	ENSCSAVG00000003567	-	89	50.955	Ciona_savignyi
ENSMZEG00005019071	-	92	69.886	ENSCSAVG00000006093	-	91	68.085	Ciona_savignyi
ENSMZEG00005019071	-	93	66.102	FBgn0283477	SF2	73	66.489	Drosophila_melanogaster
ENSMZEG00005019071	-	99	75.132	ENSEBUG00000009582	-	84	74.257	Eptatretus_burgeri
ENSMZEG00005019071	-	99	91.005	ENSFHEG00000017425	-	100	91.667	Fundulus_heteroclitus
ENSMZEG00005019071	-	99	83.684	ENSGMOG00000010606	-	97	85.714	Gadus_morhua
ENSMZEG00005019071	-	99	92.063	ENSGAFG00000000609	-	93	94.017	Gambusia_affinis
ENSMZEG00005019071	-	98	84.043	ENSGAFG00000012721	-	78	84.422	Gambusia_affinis
ENSMZEG00005019071	-	98	82.979	ENSGACG00000011094	-	96	84.946	Gasterosteus_aculeatus
ENSMZEG00005019071	-	100	99.615	ENSHBUG00000015576	-	100	99.615	Haplochromis_burtoni
ENSMZEG00005019071	-	68	62.308	ENSHBUG00000015600	-	92	57.463	Haplochromis_burtoni
ENSMZEG00005019071	-	98	80.000	ENSHCOG00000008016	-	77	81.683	Hippocampus_comes
ENSMZEG00005019071	-	98	83.422	ENSMFAG00000034223	-	65	85.500	Macaca_fascicularis
ENSMZEG00005019071	-	98	84.043	ENSMZEG00005007947	-	78	84.422	Maylandia_zebra
ENSMZEG00005019071	-	99	87.302	ENSMMOG00000018849	-	79	88.614	Mola_mola
ENSMZEG00005019071	-	98	84.043	ENSNBRG00000019981	-	78	84.422	Neolamprologus_brichardi
ENSMZEG00005019071	-	100	98.851	ENSNBRG00000008134	-	100	98.851	Neolamprologus_brichardi
ENSMZEG00005019071	-	92	65.517	ENSOPRG00000004745	-	98	64.943	Ochotona_princeps
ENSMZEG00005019071	-	99	95.833	ENSONIG00000004857	-	99	98.016	Oreochromis_niloticus
ENSMZEG00005019071	-	66	84.127	ENSOANG00000007320	-	53	96.512	Ornithorhynchus_anatinus
ENSMZEG00005019071	-	92	54.023	ENSOCUG00000026856	-	96	54.494	Oryctolagus_cuniculus
ENSMZEG00005019071	-	100	94.595	ENSORLG00000005314	-	99	94.595	Oryzias_latipes
ENSMZEG00005019071	-	100	94.595	ENSORLG00015015497	-	99	94.595	Oryzias_latipes_hsok
ENSMZEG00005019071	-	100	96.139	ENSOMEG00000017711	-	98	96.139	Oryzias_melastigma
ENSMZEG00005019071	-	99	83.069	ENSPLAG00000019553	-	91	84.574	Poecilia_latipinna
ENSMZEG00005019071	-	98	84.043	ENSPLAG00000019613	-	72	83.957	Poecilia_latipinna
ENSMZEG00005019071	-	99	91.005	ENSPREG00000016792	-	93	93.162	Poecilia_reticulata
ENSMZEG00005019071	-	100	99.234	ENSPNYG00000020651	-	100	99.234	Pundamilia_nyererei
ENSMZEG00005019071	-	98	84.043	ENSPNYG00000017115	-	78	84.422	Pundamilia_nyererei
ENSMZEG00005019071	-	98	86.631	ENSSFOG00015004989	-	71	87.500	Scleropages_formosus
ENSMZEG00005019071	-	98	88.265	ENSSDUG00000003887	-	92	90.871	Seriola_dumerili
ENSMZEG00005019071	-	99	80.423	ENSTRUG00000017058	-	80	82.178	Takifugu_rubripes
ENSMZEG00005019071	-	99	77.368	ENSTNIG00000009993	-	81	79.310	Tetraodon_nigroviridis
ENSMZEG00005019071	-	98	84.043	ENSXCOG00000009643	-	78	85.128	Xiphophorus_couchianus
ENSMZEG00005019071	-	99	91.534	ENSXCOG00000017888	-	92	94.595	Xiphophorus_couchianus
ENSMZEG00005019071	-	99	91.534	ENSXMAG00000010797	-	93	93.590	Xiphophorus_maculatus