EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005020233 (Gene tree)
Gene ID: 101482291
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 23063 bases
Position: chrAGTA05000031.1:930695-953757
Accession: 101482291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005027132	RRM_1	PF00076.22	3.4e-15	1	2
ENSMZEP00005027132	RRM_1	PF00076.22	3.4e-15	2	2
ENSMZEP00005027124	RRM_1	PF00076.22	6.8e-15	1	2
ENSMZEP00005027124	RRM_1	PF00076.22	6.8e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005027992	-	2730	-	ENSMZEP00005027124	616 (aa)	-	-
ENSMZET00005028000	-	2802	XM_004569517	ENSMZEP00005027132	514 (aa)	XP_004569574	UPI000329B968

Gene Model

Click here to download ENSMZEG00005020233's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005020233's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005020233	rnpc3	97	53.755	ENSG00000185946	RNPC3	96	57.895	Homo_sapiens
ENSMZEG00005020233	rnpc3	99	84.990	ENSAPOG00000017371	rnpc3	99	84.990	Acanthochromis_polyacanthus
ENSMZEG00005020233	rnpc3	97	53.373	ENSAMEG00000001694	RNPC3	94	53.663	Ailuropoda_melanoleuca
ENSMZEG00005020233	rnpc3	100	86.187	ENSACIG00000021043	rnpc3	100	86.576	Amphilophus_citrinellus
ENSMZEG00005020233	rnpc3	99	85.185	ENSAOCG00000014052	rnpc3	98	85.185	Amphiprion_ocellaris
ENSMZEG00005020233	rnpc3	99	84.990	ENSAPEG00000008739	rnpc3	98	84.990	Amphiprion_percula
ENSMZEG00005020233	rnpc3	99	80.464	ENSATEG00000021263	rnpc3	99	80.464	Anabas_testudineus
ENSMZEG00005020233	rnpc3	89	55.172	ENSAPLG00000015605	RNPC3	99	55.172	Anas_platyrhynchos
ENSMZEG00005020233	rnpc3	96	53.629	ENSACAG00000002029	RNPC3	96	51.677	Anolis_carolinensis
ENSMZEG00005020233	rnpc3	97	53.452	ENSANAG00000019950	RNPC3	95	53.452	Aotus_nancymaae
ENSMZEG00005020233	rnpc3	100	96.304	ENSACLG00000014702	rnpc3	99	96.318	Astatotilapia_calliptera
ENSMZEG00005020233	rnpc3	99	63.969	ENSAMXG00000033372	rnpc3	99	64.162	Astyanax_mexicanus
ENSMZEG00005020233	rnpc3	97	54.076	ENSBTAG00000019091	RNPC3	95	54.076	Bos_taurus
ENSMZEG00005020233	rnpc3	97	53.360	ENSCJAG00000035686	RNPC3	94	53.360	Callithrix_jacchus
ENSMZEG00005020233	rnpc3	97	53.877	ENSCAFG00000019972	RNPC3	94	53.968	Canis_familiaris
ENSMZEG00005020233	rnpc3	97	53.678	ENSCAFG00020011300	RNPC3	94	53.968	Canis_lupus_dingo
ENSMZEG00005020233	rnpc3	97	54.257	ENSCHIG00000020361	RNPC3	98	52.581	Capra_hircus
ENSMZEG00005020233	rnpc3	97	53.267	ENSTSYG00000030256	RNPC3	95	53.267	Carlito_syrichta
ENSMZEG00005020233	rnpc3	86	44.124	ENSCAPG00000013600	RNPC3	97	44.295	Cavia_aperea
ENSMZEG00005020233	rnpc3	97	52.475	ENSCPOG00000031638	RNPC3	95	52.475	Cavia_porcellus
ENSMZEG00005020233	rnpc3	97	53.254	ENSCCAG00000024301	RNPC3	95	53.254	Cebus_capucinus
ENSMZEG00005020233	rnpc3	97	41.400	ENSCATG00000035930	-	52	47.826	Cercocebus_atys
ENSMZEG00005020233	rnpc3	97	53.649	ENSCATG00000002086	RNPC3	94	53.649	Cercocebus_atys
ENSMZEG00005020233	rnpc3	97	51.252	ENSCLAG00000005169	RNPC3	95	52.183	Chinchilla_lanigera
ENSMZEG00005020233	rnpc3	97	53.649	ENSCSAG00000001519	RNPC3	94	53.649	Chlorocebus_sabaeus
ENSMZEG00005020233	rnpc3	97	56.410	ENSCPBG00000028311	RNPC3	95	56.607	Chrysemys_picta_bellii
ENSMZEG00005020233	rnpc3	61	56.154	ENSCSAVG00000002800	-	76	56.154	Ciona_savignyi
ENSMZEG00005020233	rnpc3	97	53.069	ENSCANG00000031444	RNPC3	94	53.267	Colobus_angolensis_palliatus
ENSMZEG00005020233	rnpc3	97	53.649	ENSCGRG00001019276	Rnpc3	95	53.465	Cricetulus_griseus_chok1gshd
ENSMZEG00005020233	rnpc3	89	51.820	ENSCGRG00000000053	Rnpc3	99	51.613	Cricetulus_griseus_crigri
ENSMZEG00005020233	rnpc3	99	73.438	ENSCSEG00000013475	rnpc3	99	73.438	Cynoglossus_semilaevis
ENSMZEG00005020233	rnpc3	99	79.961	ENSCVAG00000002645	rnpc3	99	79.961	Cyprinodon_variegatus
ENSMZEG00005020233	rnpc3	99	63.992	ENSDARG00000011247	rnpc3	99	64.008	Danio_rerio
ENSMZEG00005020233	rnpc3	97	53.465	ENSDNOG00000044555	-	95	53.465	Dasypus_novemcinctus
ENSMZEG00005020233	rnpc3	97	53.861	ENSDNOG00000047498	-	95	53.861	Dasypus_novemcinctus
ENSMZEG00005020233	rnpc3	97	52.778	ENSDORG00000027343	Rnpc3	95	52.778	Dipodomys_ordii
ENSMZEG00005020233	rnpc3	97	49.234	ENSEBUG00000002068	rnpc3	98	49.328	Eptatretus_burgeri
ENSMZEG00005020233	rnpc3	97	54.150	ENSEASG00005015957	RNPC3	94	54.150	Equus_asinus_asinus
ENSMZEG00005020233	rnpc3	97	54.043	ENSECAG00000021148	RNPC3	94	54.043	Equus_caballus
ENSMZEG00005020233	rnpc3	99	68.008	ENSELUG00000002264	rnpc3	99	66.667	Esox_lucius
ENSMZEG00005020233	rnpc3	97	53.479	ENSFCAG00000024312	RNPC3	98	52.490	Felis_catus
ENSMZEG00005020233	rnpc3	89	54.741	ENSFALG00000002580	RNPC3	99	54.741	Ficedula_albicollis
ENSMZEG00005020233	rnpc3	97	53.267	ENSFDAG00000019948	RNPC3	95	53.267	Fukomys_damarensis
ENSMZEG00005020233	rnpc3	99	73.099	ENSFHEG00000020647	rnpc3	99	73.099	Fundulus_heteroclitus
ENSMZEG00005020233	rnpc3	99	66.862	ENSGMOG00000019213	rnpc3	99	66.157	Gadus_morhua
ENSMZEG00005020233	rnpc3	97	55.268	ENSGALG00000005162	RNPC3	96	52.174	Gallus_gallus
ENSMZEG00005020233	rnpc3	99	76.608	ENSGAFG00000017236	rnpc3	99	77.087	Gambusia_affinis
ENSMZEG00005020233	rnpc3	99	80.077	ENSGACG00000002048	rnpc3	99	80.426	Gasterosteus_aculeatus
ENSMZEG00005020233	rnpc3	97	56.805	ENSGAGG00000008438	RNPC3	98	54.815	Gopherus_agassizii
ENSMZEG00005020233	rnpc3	97	47.200	ENSGGOG00000026201	-	95	46.825	Gorilla_gorilla
ENSMZEG00005020233	rnpc3	83	100.000	ENSHBUG00000015966	rnpc3	85	100.000	Haplochromis_burtoni
ENSMZEG00005020233	rnpc3	97	52.663	ENSHGLG00000001708	RNPC3	95	52.663	Heterocephalus_glaber_female
ENSMZEG00005020233	rnpc3	97	52.663	ENSHGLG00100003005	RNPC3	95	52.663	Heterocephalus_glaber_male
ENSMZEG00005020233	rnpc3	99	73.294	ENSHCOG00000017135	rnpc3	99	73.294	Hippocampus_comes
ENSMZEG00005020233	rnpc3	99	62.646	ENSIPUG00000002916	rnpc3	99	63.424	Ictalurus_punctatus
ENSMZEG00005020233	rnpc3	97	53.770	ENSSTOG00000025020	RNPC3	95	53.770	Ictidomys_tridecemlineatus
ENSMZEG00005020233	rnpc3	97	52.485	ENSJJAG00000010203	Rnpc3	95	52.390	Jaculus_jaculus
ENSMZEG00005020233	rnpc3	100	78.405	ENSKMAG00000017358	rnpc3	100	78.016	Kryptolebias_marmoratus
ENSMZEG00005020233	rnpc3	99	81.092	ENSLBEG00000024901	rnpc3	97	81.092	Labrus_bergylta
ENSMZEG00005020233	rnpc3	99	57.171	ENSLACG00000005720	RNPC3	94	54.064	Latimeria_chalumnae
ENSMZEG00005020233	rnpc3	99	63.689	ENSLOCG00000007986	rnpc3	99	60.542	Lepisosteus_oculatus
ENSMZEG00005020233	rnpc3	97	53.678	ENSLAFG00000032342	RNPC3	98	52.783	Loxodonta_africana
ENSMZEG00005020233	rnpc3	97	41.200	ENSMFAG00000002917	-	98	41.970	Macaca_fascicularis
ENSMZEG00005020233	rnpc3	97	53.649	ENSMFAG00000002004	RNPC3	94	53.649	Macaca_fascicularis
ENSMZEG00005020233	rnpc3	97	53.452	ENSMMUG00000018039	RNPC3	94	53.452	Macaca_mulatta
ENSMZEG00005020233	rnpc3	79	50.446	ENSMMUG00000002098	-	85	50.000	Macaca_mulatta
ENSMZEG00005020233	rnpc3	97	50.493	ENSMNEG00000033950	RNPC3	94	50.493	Macaca_nemestrina
ENSMZEG00005020233	rnpc3	97	40.080	ENSMNEG00000029209	-	99	41.189	Macaca_nemestrina
ENSMZEG00005020233	rnpc3	97	53.649	ENSMLEG00000033628	RNPC3	94	53.649	Mandrillus_leucophaeus
ENSMZEG00005020233	rnpc3	97	40.705	ENSMLEG00000034644	-	95	40.583	Mandrillus_leucophaeus
ENSMZEG00005020233	rnpc3	99	72.710	ENSMAMG00000007496	rnpc3	99	72.710	Mastacembelus_armatus
ENSMZEG00005020233	rnpc3	89	55.819	ENSMGAG00000006381	RNPC3	99	55.819	Meleagris_gallopavo
ENSMZEG00005020233	rnpc3	97	53.908	ENSMAUG00000001358	Rnpc3	95	53.908	Mesocricetus_auratus
ENSMZEG00005020233	rnpc3	97	52.871	ENSMICG00000029591	RNPC3	95	53.175	Microcebus_murinus
ENSMZEG00005020233	rnpc3	97	53.877	ENSMOCG00000013423	Rnpc3	94	53.861	Microtus_ochrogaster
ENSMZEG00005020233	rnpc3	99	73.541	ENSMMOG00000005309	rnpc3	99	75.292	Mola_mola
ENSMZEG00005020233	rnpc3	97	54.941	ENSMODG00000002946	RNPC3	95	54.941	Monodelphis_domestica
ENSMZEG00005020233	rnpc3	99	75.490	ENSMALG00000015471	rnpc3	99	75.490	Monopterus_albus
ENSMZEG00005020233	rnpc3	97	54.382	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.382	Mus_caroli
ENSMZEG00005020233	rnpc3	97	54.563	ENSMUSG00000027981	Rnpc3	99	52.929	Mus_musculus
ENSMZEG00005020233	rnpc3	97	54.365	MGP_PahariEiJ_G0027001	Rnpc3	96	54.365	Mus_pahari
ENSMZEG00005020233	rnpc3	97	51.154	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.365	Mus_spretus
ENSMZEG00005020233	rnpc3	97	53.800	ENSMPUG00000007349	RNPC3	94	53.400	Mustela_putorius_furo
ENSMZEG00005020233	rnpc3	97	53.373	ENSMLUG00000028743	RNPC3	94	53.663	Myotis_lucifugus
ENSMZEG00005020233	rnpc3	97	53.373	ENSNGAG00000010939	Rnpc3	95	53.373	Nannospalax_galili
ENSMZEG00005020233	rnpc3	100	95.720	ENSNBRG00000012196	rnpc3	97	95.376	Neolamprologus_brichardi
ENSMZEG00005020233	rnpc3	97	53.755	ENSNLEG00000012013	RNPC3	95	53.755	Nomascus_leucogenys
ENSMZEG00005020233	rnpc3	97	52.579	ENSODEG00000007612	RNPC3	95	52.883	Octodon_degus
ENSMZEG00005020233	rnpc3	100	94.163	ENSONIG00000004770	rnpc3	100	94.000	Oreochromis_niloticus
ENSMZEG00005020233	rnpc3	92	55.672	ENSOANG00000008220	RNPC3	99	55.882	Ornithorhynchus_anatinus
ENSMZEG00005020233	rnpc3	97	53.740	ENSOCUG00000004016	RNPC3	95	53.452	Oryctolagus_cuniculus
ENSMZEG00005020233	rnpc3	99	75.634	ENSORLG00000005694	rnpc3	99	75.634	Oryzias_latipes
ENSMZEG00005020233	rnpc3	99	75.634	ENSORLG00020005513	rnpc3	99	75.775	Oryzias_latipes_hni
ENSMZEG00005020233	rnpc3	99	75.828	ENSORLG00015002179	rnpc3	99	75.828	Oryzias_latipes_hsok
ENSMZEG00005020233	rnpc3	99	76.803	ENSOMEG00000017737	rnpc3	99	76.803	Oryzias_melastigma
ENSMZEG00005020233	rnpc3	97	53.465	ENSOGAG00000026182	RNPC3	95	53.663	Otolemur_garnettii
ENSMZEG00005020233	rnpc3	97	54.257	ENSOARG00000018719	RNPC3	98	52.290	Ovis_aries
ENSMZEG00005020233	rnpc3	97	53.543	ENSPPAG00000037459	RNPC3	95	53.543	Pan_paniscus
ENSMZEG00005020233	rnpc3	98	47.619	ENSPPAG00000030278	-	97	47.929	Pan_paniscus
ENSMZEG00005020233	rnpc3	97	53.479	ENSPPRG00000020246	RNPC3	98	52.399	Panthera_pardus
ENSMZEG00005020233	rnpc3	97	53.479	ENSPTIG00000009887	RNPC3	99	52.399	Panthera_tigris_altaica
ENSMZEG00005020233	rnpc3	97	53.452	ENSPTRG00000033902	RNPC3	95	53.452	Pan_troglodytes
ENSMZEG00005020233	rnpc3	98	47.024	ENSPTRG00000044227	-	97	47.024	Pan_troglodytes
ENSMZEG00005020233	rnpc3	97	43.787	ENSPANG00000029957	-	96	41.897	Papio_anubis
ENSMZEG00005020233	rnpc3	97	53.755	ENSPANG00000012137	RNPC3	94	53.755	Papio_anubis
ENSMZEG00005020233	rnpc3	97	65.868	ENSPKIG00000008828	rnpc3	96	63.673	Paramormyrops_kingsleyae
ENSMZEG00005020233	rnpc3	65	51.906	ENSPSIG00000007396	RNPC3	99	53.079	Pelodiscus_sinensis
ENSMZEG00005020233	rnpc3	99	65.107	ENSPMGG00000011742	rnpc3	98	64.833	Periophthalmus_magnuspinnatus
ENSMZEG00005020233	rnpc3	92	50.625	ENSPEMG00000020112	Rnpc3	99	51.828	Peromyscus_maniculatus_bairdii
ENSMZEG00005020233	rnpc3	97	40.485	ENSPMAG00000003778	rnpc3	96	43.726	Petromyzon_marinus
ENSMZEG00005020233	rnpc3	97	55.534	ENSPCIG00000004415	-	95	55.534	Phascolarctos_cinereus
ENSMZEG00005020233	rnpc3	99	79.183	ENSPFOG00000009895	rnpc3	99	79.183	Poecilia_formosa
ENSMZEG00005020233	rnpc3	99	78.988	ENSPLAG00000012023	rnpc3	99	78.988	Poecilia_latipinna
ENSMZEG00005020233	rnpc3	99	79.377	ENSPMEG00000003663	rnpc3	99	79.377	Poecilia_mexicana
ENSMZEG00005020233	rnpc3	99	78.794	ENSPREG00000010206	rnpc3	99	78.794	Poecilia_reticulata
ENSMZEG00005020233	rnpc3	81	49.296	ENSPPYG00000001102	RNPC3	93	49.296	Pongo_abelii
ENSMZEG00005020233	rnpc3	100	95.720	ENSPNYG00000020603	rnpc3	99	95.736	Pundamilia_nyererei
ENSMZEG00005020233	rnpc3	99	58.095	ENSPNAG00000000524	rnpc3	92	57.627	Pygocentrus_nattereri
ENSMZEG00005020233	rnpc3	97	53.586	ENSRNOG00000017310	Rnpc3	95	53.586	Rattus_norvegicus
ENSMZEG00005020233	rnpc3	97	50.591	ENSRBIG00000043897	RNPC3	94	50.591	Rhinopithecus_bieti
ENSMZEG00005020233	rnpc3	97	53.649	ENSRROG00000032334	RNPC3	94	53.649	Rhinopithecus_roxellana
ENSMZEG00005020233	rnpc3	97	53.557	ENSSBOG00000024473	RNPC3	95	53.557	Saimiri_boliviensis_boliviensis
ENSMZEG00005020233	rnpc3	97	54.743	ENSSHAG00000011859	RNPC3	95	54.743	Sarcophilus_harrisii
ENSMZEG00005020233	rnpc3	99	67.121	ENSSFOG00015013055	rnpc3	99	67.594	Scleropages_formosus
ENSMZEG00005020233	rnpc3	99	79.264	ENSSMAG00000020346	rnpc3	99	79.264	Scophthalmus_maximus
ENSMZEG00005020233	rnpc3	99	83.658	ENSSDUG00000006600	rnpc3	99	83.658	Seriola_dumerili
ENSMZEG00005020233	rnpc3	99	83.463	ENSSLDG00000007979	rnpc3	99	83.463	Seriola_lalandi_dorsalis
ENSMZEG00005020233	rnpc3	96	55.444	ENSSPUG00000008539	-	94	54.038	Sphenodon_punctatus
ENSMZEG00005020233	rnpc3	96	52.121	ENSSPUG00000003872	-	90	52.121	Sphenodon_punctatus
ENSMZEG00005020233	rnpc3	99	83.041	ENSSPAG00000005633	rnpc3	99	82.066	Stegastes_partitus
ENSMZEG00005020233	rnpc3	97	53.191	ENSSSCG00000037254	RNPC3	95	55.268	Sus_scrofa
ENSMZEG00005020233	rnpc3	89	55.508	ENSTGUG00000004795	-	99	55.508	Taeniopygia_guttata
ENSMZEG00005020233	rnpc3	99	74.319	ENSTNIG00000018963	rnpc3	99	74.319	Tetraodon_nigroviridis
ENSMZEG00005020233	rnpc3	97	53.280	ENSUMAG00000007775	RNPC3	96	53.571	Ursus_maritimus
ENSMZEG00005020233	rnpc3	97	53.678	ENSVVUG00000000331	RNPC3	94	53.968	Vulpes_vulpes
ENSMZEG00005020233	rnpc3	97	44.576	ENSXETG00000025027	rnpc3	96	43.849	Xenopus_tropicalis
ENSMZEG00005020233	rnpc3	54	75.986	ENSXCOG00000005013	rnpc3	99	76.291	Xiphophorus_couchianus
ENSMZEG00005020233	rnpc3	99	77.583	ENSXMAG00000006495	rnpc3	99	78.058	Xiphophorus_maculatus