EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005020460 (Gene tree)
Gene ID: 101478436
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 8445 bases
Position: chrLG3:15712778-15721222
Accession: 101478436
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005027447	RRM_1	PF00076.22	4.6e-12	1	1
ENSMZEP00005027444	RRM_1	PF00076.22	5.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005028317	-	2081	XM_012922547	ENSMZEP00005027444	306 (aa)	XP_012778001	UPI000648501D
ENSMZET00005028320	-	855	-	ENSMZEP00005027447	284 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005020460's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005020460's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005020460	-	92	49.648	ENSG00000184672	RALYL	93	77.215	Homo_sapiens
ENSMZEG00005020460	-	100	89.577	ENSAPOG00000006963	hnrnpc	100	87.948	Acanthochromis_polyacanthus
ENSMZEG00005020460	-	88	78.544	ENSACIG00000016568	-	92	79.352	Amphilophus_citrinellus
ENSMZEG00005020460	-	96	95.318	ENSACIG00000000270	-	100	95.318	Amphilophus_citrinellus
ENSMZEG00005020460	-	100	89.251	ENSAOCG00000003896	-	100	87.622	Amphiprion_ocellaris
ENSMZEG00005020460	-	87	78.599	ENSAOCG00000021616	-	78	82.609	Amphiprion_ocellaris
ENSMZEG00005020460	-	100	89.251	ENSAPEG00000001489	-	100	87.622	Amphiprion_percula
ENSMZEG00005020460	-	88	79.693	ENSAPEG00000019962	-	81	83.399	Amphiprion_percula
ENSMZEG00005020460	-	92	92.606	ENSATEG00000011734	-	100	88.673	Anabas_testudineus
ENSMZEG00005020460	-	88	79.771	ENSATEG00000018006	-	80	86.425	Anabas_testudineus
ENSMZEG00005020460	-	75	53.540	ENSAPLG00000015574	RALYL	76	55.310	Anas_platyrhynchos
ENSMZEG00005020460	-	75	52.655	ENSACAG00000028464	RALYL	75	54.425	Anolis_carolinensis
ENSMZEG00005020460	-	92	49.296	ENSANAG00000023383	RALYL	74	57.209	Aotus_nancymaae
ENSMZEG00005020460	-	88	77.186	ENSACLG00000005707	-	86	82.609	Astatotilapia_calliptera
ENSMZEG00005020460	-	100	100.000	ENSACLG00000000995	-	100	100.000	Astatotilapia_calliptera
ENSMZEG00005020460	-	100	99.673	ENSACLG00000013636	-	96	96.864	Astatotilapia_calliptera
ENSMZEG00005020460	-	68	80.476	ENSAMXG00000042946	hnrnpc	98	78.351	Astyanax_mexicanus
ENSMZEG00005020460	-	88	77.510	ENSAMXG00000034915	zgc:55733	87	77.510	Astyanax_mexicanus
ENSMZEG00005020460	-	92	49.296	ENSCJAG00000000402	RALYL	75	56.621	Callithrix_jacchus
ENSMZEG00005020460	-	77	53.043	ENSCPOG00000012314	RALYL	75	54.425	Cavia_porcellus
ENSMZEG00005020460	-	92	50.000	ENSCCAG00000025003	RALYL	77	77.215	Cebus_capucinus
ENSMZEG00005020460	-	92	49.648	ENSCATG00000042145	RALYL	74	57.674	Cercocebus_atys
ENSMZEG00005020460	-	77	53.043	ENSCLAG00000005228	RALYL	75	54.425	Chinchilla_lanigera
ENSMZEG00005020460	-	75	52.655	ENSCHOG00000013228	RALYL	75	52.212	Choloepus_hoffmanni
ENSMZEG00005020460	-	92	49.648	ENSCANG00000039144	RALYL	74	57.674	Colobus_angolensis_palliatus
ENSMZEG00005020460	-	75	53.982	ENSCGRG00001009241	Ralyl	75	55.752	Cricetulus_griseus_chok1gshd
ENSMZEG00005020460	-	98	69.716	ENSCSEG00000021349	-	90	70.000	Cynoglossus_semilaevis
ENSMZEG00005020460	-	80	73.043	ENSCSEG00000019769	-	70	81.250	Cynoglossus_semilaevis
ENSMZEG00005020460	-	87	78.210	ENSCVAG00000016981	-	87	74.737	Cyprinodon_variegatus
ENSMZEG00005020460	-	96	73.311	ENSCVAG00000002797	-	91	74.815	Cyprinodon_variegatus
ENSMZEG00005020460	-	91	79.928	ENSDARG00000103845	zgc:55733	90	80.723	Danio_rerio
ENSMZEG00005020460	-	78	80.992	ENSDARG00000053810	hnrnpc	78	79.365	Danio_rerio
ENSMZEG00005020460	-	75	54.425	ENSDORG00000003721	Ralyl	75	56.195	Dipodomys_ordii
ENSMZEG00005020460	-	57	56.322	ENSETEG00000014028	RALYL	92	56.667	Echinops_telfairi
ENSMZEG00005020460	-	93	42.701	ENSEBUG00000012363	hnrnpc	67	45.815	Eptatretus_burgeri
ENSMZEG00005020460	-	93	43.542	ENSEBUG00000006049	RALYL	74	49.528	Eptatretus_burgeri
ENSMZEG00005020460	-	77	53.478	ENSEEUG00000007202	RALYL	76	56.195	Erinaceus_europaeus
ENSMZEG00005020460	-	87	77.395	ENSELUG00000004132	-	87	78.295	Esox_lucius
ENSMZEG00005020460	-	83	82.222	ENSELUG00000007714	-	88	82.625	Esox_lucius
ENSMZEG00005020460	-	75	56.744	ENSFALG00000008647	RALYL	97	56.744	Ficedula_albicollis
ENSMZEG00005020460	-	92	87.324	ENSFHEG00000003605	-	93	87.324	Fundulus_heteroclitus
ENSMZEG00005020460	-	88	72.628	ENSFHEG00000007278	-	98	66.563	Fundulus_heteroclitus
ENSMZEG00005020460	-	75	57.209	ENSGALG00000036938	RALYL	75	55.310	Gallus_gallus
ENSMZEG00005020460	-	100	84.039	ENSGAFG00000020486	-	100	85.342	Gambusia_affinis
ENSMZEG00005020460	-	88	78.077	ENSGAFG00000020992	-	82	80.237	Gambusia_affinis
ENSMZEG00005020460	-	79	71.304	ENSGACG00000018932	-	88	72.768	Gasterosteus_aculeatus
ENSMZEG00005020460	-	92	75.458	ENSGACG00000017772	-	96	78.968	Gasterosteus_aculeatus
ENSMZEG00005020460	-	92	49.648	ENSGGOG00000000841	RALYL	74	57.674	Gorilla_gorilla
ENSMZEG00005020460	-	100	99.673	ENSHBUG00000018342	-	100	99.673	Haplochromis_burtoni
ENSMZEG00005020460	-	88	77.567	ENSHBUG00000010527	-	79	82.353	Haplochromis_burtoni
ENSMZEG00005020460	-	77	52.609	ENSHGLG00000004866	RALYL	75	53.982	Heterocephalus_glaber_female
ENSMZEG00005020460	-	77	52.609	ENSHGLG00100017480	RALYL	75	53.982	Heterocephalus_glaber_male
ENSMZEG00005020460	-	84	76.753	ENSHCOG00000012333	hnrnpc	96	69.435	Hippocampus_comes
ENSMZEG00005020460	-	86	78.788	ENSIPUG00000008666	zgc:55733	95	82.727	Ictalurus_punctatus
ENSMZEG00005020460	-	84	81.395	ENSIPUG00000011271	hnrnpc	98	79.565	Ictalurus_punctatus
ENSMZEG00005020460	-	75	53.982	ENSSTOG00000012583	RALYL	76	55.752	Ictidomys_tridecemlineatus
ENSMZEG00005020460	-	92	89.324	ENSKMAG00000011170	-	91	87.633	Kryptolebias_marmoratus
ENSMZEG00005020460	-	87	76.654	ENSKMAG00000018265	-	80	77.778	Kryptolebias_marmoratus
ENSMZEG00005020460	-	88	85.556	ENSLBEG00000006979	-	99	79.181	Labrus_bergylta
ENSMZEG00005020460	-	87	77.132	ENSLBEG00000006193	-	79	79.842	Labrus_bergylta
ENSMZEG00005020460	-	95	75.241	ENSLBEG00000024418	-	99	77.152	Labrus_bergylta
ENSMZEG00005020460	-	88	67.925	ENSLOCG00000002560	hnrnpc	89	70.566	Lepisosteus_oculatus
ENSMZEG00005020460	-	92	49.648	ENSMNEG00000033288	RALYL	74	57.674	Macaca_nemestrina
ENSMZEG00005020460	-	92	49.648	ENSMLEG00000038284	RALYL	74	57.674	Mandrillus_leucophaeus
ENSMZEG00005020460	-	92	90.845	ENSMAMG00000012236	-	92	90.493	Mastacembelus_armatus
ENSMZEG00005020460	-	88	79.771	ENSMAMG00000008033	-	88	81.569	Mastacembelus_armatus
ENSMZEG00005020460	-	88	77.186	ENSMZEG00005024249	-	80	82.609	Maylandia_zebra
ENSMZEG00005020460	-	75	53.982	ENSMAUG00000015149	Ralyl	75	55.752	Mesocricetus_auratus
ENSMZEG00005020460	-	77	56.621	ENSMICG00000005558	RALYL	80	77.215	Microcebus_murinus
ENSMZEG00005020460	-	75	53.982	ENSMOCG00000017371	Ralyl	75	55.752	Microtus_ochrogaster
ENSMZEG00005020460	-	90	77.174	ENSMMOG00000019520	-	80	87.440	Mola_mola
ENSMZEG00005020460	-	83	92.941	ENSMMOG00000021465	-	88	92.800	Mola_mola
ENSMZEG00005020460	-	85	82.890	ENSMALG00000014623	-	79	82.540	Monopterus_albus
ENSMZEG00005020460	-	96	81.633	ENSMALG00000007520	-	98	80.000	Monopterus_albus
ENSMZEG00005020460	-	75	53.540	ENSMUSG00000039717	Ralyl	93	75.949	Mus_musculus
ENSMZEG00005020460	-	77	54.348	ENSMPUG00000010724	RALYL	75	54.867	Mustela_putorius_furo
ENSMZEG00005020460	-	75	53.982	ENSNGAG00000013375	Ralyl	75	55.752	Nannospalax_galili
ENSMZEG00005020460	-	97	98.322	ENSNBRG00000004912	-	99	98.322	Neolamprologus_brichardi
ENSMZEG00005020460	-	88	77.567	ENSNBRG00000015676	-	95	68.027	Neolamprologus_brichardi
ENSMZEG00005020460	-	92	49.648	ENSNLEG00000002702	RALYL	71	57.674	Nomascus_leucogenys
ENSMZEG00005020460	-	64	49.485	ENSOPRG00000013650	-	98	50.000	Ochotona_princeps
ENSMZEG00005020460	-	92	46.309	ENSODEG00000001012	RALYL	75	53.982	Octodon_degus
ENSMZEG00005020460	-	99	96.463	ENSONIG00000007859	-	100	96.463	Oreochromis_niloticus
ENSMZEG00005020460	-	88	77.567	ENSONIG00000018350	-	79	82.353	Oreochromis_niloticus
ENSMZEG00005020460	-	87	77.652	ENSORLG00000003144	-	78	80.460	Oryzias_latipes
ENSMZEG00005020460	-	100	76.299	ENSORLG00000009999	-	100	75.325	Oryzias_latipes
ENSMZEG00005020460	-	100	75.974	ENSORLG00020018228	hnrnpc	100	75.000	Oryzias_latipes_hni
ENSMZEG00005020460	-	100	76.299	ENSORLG00015019755	-	100	75.325	Oryzias_latipes_hsok
ENSMZEG00005020460	-	87	77.652	ENSORLG00015009460	-	78	80.460	Oryzias_latipes_hsok
ENSMZEG00005020460	-	87	80.934	ENSOMEG00000022665	-	79	83.071	Oryzias_melastigma
ENSMZEG00005020460	-	100	76.052	ENSOMEG00000020488	-	100	75.405	Oryzias_melastigma
ENSMZEG00005020460	-	92	49.648	ENSPPAG00000038705	RALYL	74	57.674	Pan_paniscus
ENSMZEG00005020460	-	77	57.078	ENSPPRG00000018612	RALYL	74	58.796	Panthera_pardus
ENSMZEG00005020460	-	77	57.078	ENSPTIG00000020331	RALYL	74	58.796	Panthera_tigris_altaica
ENSMZEG00005020460	-	92	49.648	ENSPTRG00000020381	RALYL	74	57.674	Pan_troglodytes
ENSMZEG00005020460	-	92	49.648	ENSPANG00000029305	RALYL	74	57.674	Papio_anubis
ENSMZEG00005020460	-	92	77.778	ENSPKIG00000022837	-	86	81.818	Paramormyrops_kingsleyae
ENSMZEG00005020460	-	91	79.791	ENSPKIG00000008592	-	87	80.797	Paramormyrops_kingsleyae
ENSMZEG00005020460	-	75	53.540	ENSPSIG00000011135	RALYL	75	55.310	Pelodiscus_sinensis
ENSMZEG00005020460	-	78	83.857	ENSPMGG00000013144	-	82	83.784	Periophthalmus_magnuspinnatus
ENSMZEG00005020460	-	77	73.756	ENSPMGG00000017774	-	91	66.372	Periophthalmus_magnuspinnatus
ENSMZEG00005020460	-	75	53.982	ENSPEMG00000016447	Ralyl	75	55.752	Peromyscus_maniculatus_bairdii
ENSMZEG00005020460	-	75	53.043	ENSPMAG00000002407	RALYL	97	53.043	Petromyzon_marinus
ENSMZEG00005020460	-	87	78.125	ENSPFOG00000002643	-	80	79.377	Poecilia_formosa
ENSMZEG00005020460	-	100	86.364	ENSPFOG00000001583	-	100	87.013	Poecilia_formosa
ENSMZEG00005020460	-	87	78.125	ENSPLAG00000000061	-	86	75.089	Poecilia_latipinna
ENSMZEG00005020460	-	100	85.342	ENSPLAG00000015305	-	100	85.993	Poecilia_latipinna
ENSMZEG00005020460	-	87	78.125	ENSPMEG00000016524	-	78	80.237	Poecilia_mexicana
ENSMZEG00005020460	-	100	85.993	ENSPMEG00000004802	-	100	86.645	Poecilia_mexicana
ENSMZEG00005020460	-	92	88.380	ENSPREG00000007928	-	93	88.380	Poecilia_reticulata
ENSMZEG00005020460	-	87	77.985	ENSPREG00000001852	-	84	80.237	Poecilia_reticulata
ENSMZEG00005020460	-	72	45.946	ENSPPYG00000018710	-	67	47.115	Pongo_abelii
ENSMZEG00005020460	-	75	52.655	ENSPVAG00000010821	RALYL	78	52.361	Pteropus_vampyrus
ENSMZEG00005020460	-	88	77.567	ENSPNYG00000003747	-	85	82.353	Pundamilia_nyererei
ENSMZEG00005020460	-	100	92.150	ENSPNYG00000020293	-	99	92.833	Pundamilia_nyererei
ENSMZEG00005020460	-	88	76.357	ENSPNAG00000019200	zgc:55733	83	73.541	Pygocentrus_nattereri
ENSMZEG00005020460	-	77	85.169	ENSPNAG00000015686	hnrnpc	84	81.275	Pygocentrus_nattereri
ENSMZEG00005020460	-	92	49.648	ENSRROG00000023925	RALYL	82	75.309	Rhinopithecus_roxellana
ENSMZEG00005020460	-	87	77.011	ENSSFOG00015012924	-	96	79.211	Scleropages_formosus
ENSMZEG00005020460	-	88	75.094	ENSSFOG00015012015	-	90	79.498	Scleropages_formosus
ENSMZEG00005020460	-	86	77.821	ENSSMAG00000011147	-	79	84.475	Scophthalmus_maximus
ENSMZEG00005020460	-	95	82.215	ENSSMAG00000013592	-	99	81.731	Scophthalmus_maximus
ENSMZEG00005020460	-	100	89.577	ENSSDUG00000001723	-	100	88.274	Seriola_dumerili
ENSMZEG00005020460	-	88	80.077	ENSSDUG00000006730	-	81	80.077	Seriola_dumerili
ENSMZEG00005020460	-	91	92.446	ENSSLDG00000007454	-	87	91.698	Seriola_lalandi_dorsalis
ENSMZEG00005020460	-	88	80.077	ENSSLDG00000007474	-	88	80.077	Seriola_lalandi_dorsalis
ENSMZEG00005020460	-	88	80.000	ENSSPAG00000013996	-	79	81.818	Stegastes_partitus
ENSMZEG00005020460	-	92	94.286	ENSSPAG00000023204	-	100	89.251	Stegastes_partitus
ENSMZEG00005020460	-	75	53.540	ENSTGUG00000011689	RALYL	76	55.310	Taeniopygia_guttata
ENSMZEG00005020460	-	88	81.783	ENSTRUG00000020158	-	82	84.800	Takifugu_rubripes
ENSMZEG00005020460	-	93	70.934	ENSTNIG00000000334	-	93	74.031	Tetraodon_nigroviridis
ENSMZEG00005020460	-	83	82.308	ENSTNIG00000007427	-	84	79.070	Tetraodon_nigroviridis
ENSMZEG00005020460	-	83	44.841	ENSTBEG00000005551	RALYL	95	45.968	Tupaia_belangeri
ENSMZEG00005020460	-	75	51.528	ENSTTRG00000015762	RALYL	74	54.299	Tursiops_truncatus
ENSMZEG00005020460	-	75	53.271	ENSVPAG00000008501	RALYL	74	54.419	Vicugna_pacos
ENSMZEG00005020460	-	92	75.926	ENSXCOG00000006552	-	81	81.673	Xiphophorus_couchianus
ENSMZEG00005020460	-	54	87.730	ENSXCOG00000019434	-	71	87.425	Xiphophorus_couchianus
ENSMZEG00005020460	-	87	77.344	ENSXMAG00000022849	-	82	79.842	Xiphophorus_maculatus
ENSMZEG00005020460	-	100	84.365	ENSXMAG00000009333	-	100	85.016	Xiphophorus_maculatus