EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005020920 (Gene tree)
Gene ID: 101487236
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 23952 bases
Position: chrLG16:8516798-8540749
Accession: 101487236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005028084	Rif1_N	PF12231.8	1.1e-80	1	1
ENSMZEP00005028074	Rif1_N	PF12231.8	2.7e-80	1	1
ENSMZEP00005028075	Rif1_N	PF12231.8	1.2e-74	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005028969	-	6723	XM_004569801	ENSMZEP00005028074	2240 (aa)	XP_004569858	-
ENSMZET00005028979	-	6534	-	ENSMZEP00005028084	2177 (aa)	-	-
ENSMZET00005028970	-	6594	-	ENSMZEP00005028075	2197 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005020920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005020920's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005020920	rif1	72	49.585	ENSG00000080345	RIF1	97	54.501	Homo_sapiens
ENSMZEG00005020920	rif1	99	73.338	ENSAPOG00000011073	rif1	90	73.269	Acanthochromis_polyacanthus
ENSMZEG00005020920	rif1	72	50.994	ENSAMEG00000008461	RIF1	66	51.072	Ailuropoda_melanoleuca
ENSMZEG00005020920	rif1	99	78.058	ENSACIG00000017765	rif1	99	78.711	Amphilophus_citrinellus
ENSMZEG00005020920	rif1	99	73.864	ENSAOCG00000017231	rif1	96	69.579	Amphiprion_ocellaris
ENSMZEG00005020920	rif1	96	77.503	ENSAPEG00000013228	rif1	97	77.503	Amphiprion_percula
ENSMZEG00005020920	rif1	99	73.933	ENSATEG00000022887	rif1	97	77.962	Anabas_testudineus
ENSMZEG00005020920	rif1	67	53.663	ENSAPLG00000007092	RIF1	70	52.429	Anas_platyrhynchos
ENSMZEG00005020920	rif1	73	48.961	ENSACAG00000003714	RIF1	70	48.686	Anolis_carolinensis
ENSMZEG00005020920	rif1	72	49.775	ENSANAG00000024840	RIF1	66	49.925	Aotus_nancymaae
ENSMZEG00005020920	rif1	88	63.897	ENSAMXG00000010910	rif1	74	63.897	Astyanax_mexicanus
ENSMZEG00005020920	rif1	63	51.378	ENSBTAG00000021020	RIF1	62	51.724	Bos_taurus
ENSMZEG00005020920	rif1	69	50.549	ENSCJAG00000003138	RIF1	64	51.030	Callithrix_jacchus
ENSMZEG00005020920	rif1	70	51.262	ENSCAFG00000005670	RIF1	62	51.262	Canis_familiaris
ENSMZEG00005020920	rif1	74	51.262	ENSCAFG00020016401	RIF1	73	51.262	Canis_lupus_dingo
ENSMZEG00005020920	rif1	70	50.861	ENSCHIG00000020327	RIF1	76	43.105	Capra_hircus
ENSMZEG00005020920	rif1	72	47.230	ENSTSYG00000008861	RIF1	65	47.230	Carlito_syrichta
ENSMZEG00005020920	rif1	64	40.233	ENSCAPG00000008957	RIF1	76	40.816	Cavia_aperea
ENSMZEG00005020920	rif1	74	46.820	ENSCPOG00000037898	RIF1	74	44.927	Cavia_porcellus
ENSMZEG00005020920	rif1	69	48.708	ENSCCAG00000024760	RIF1	63	48.943	Cebus_capucinus
ENSMZEG00005020920	rif1	68	50.949	ENSCATG00000033353	RIF1	63	51.192	Cercocebus_atys
ENSMZEG00005020920	rif1	70	48.839	ENSCLAG00000001517	RIF1	67	48.877	Chinchilla_lanigera
ENSMZEG00005020920	rif1	69	51.028	ENSCSAG00000016089	RIF1	64	51.272	Chlorocebus_sabaeus
ENSMZEG00005020920	rif1	66	50.667	ENSCHOG00000007187	RIF1	68	50.667	Choloepus_hoffmanni
ENSMZEG00005020920	rif1	67	49.194	ENSCPBG00000025885	RIF1	69	49.365	Chrysemys_picta_bellii
ENSMZEG00005020920	rif1	64	57.080	ENSCANG00000028962	RIF1	62	57.080	Colobus_angolensis_palliatus
ENSMZEG00005020920	rif1	74	48.137	ENSCGRG00001024589	Rif1	69	48.611	Cricetulus_griseus_chok1gshd
ENSMZEG00005020920	rif1	73	49.624	ENSCGRG00000010713	Rif1	68	50.113	Cricetulus_griseus_crigri
ENSMZEG00005020920	rif1	95	69.471	ENSCSEG00000003945	rif1	93	69.471	Cynoglossus_semilaevis
ENSMZEG00005020920	rif1	99	70.894	ENSCVAG00000022479	rif1	96	70.620	Cyprinodon_variegatus
ENSMZEG00005020920	rif1	93	61.756	ENSDARG00000062650	rif1	75	61.756	Danio_rerio
ENSMZEG00005020920	rif1	88	47.661	ENSDNOG00000011194	RIF1	80	46.149	Dasypus_novemcinctus
ENSMZEG00005020920	rif1	64	57.965	ENSETEG00000012421	RIF1	60	57.965	Echinops_telfairi
ENSMZEG00005020920	rif1	61	68.750	ENSEASG00005023434	RIF1	74	69.079	Equus_asinus_asinus
ENSMZEG00005020920	rif1	68	59.431	ENSECAG00000012679	RIF1	63	59.431	Equus_caballus
ENSMZEG00005020920	rif1	73	64.723	ENSELUG00000006826	rif1	64	64.110	Esox_lucius
ENSMZEG00005020920	rif1	70	50.546	ENSFCAG00000029742	RIF1	64	50.624	Felis_catus
ENSMZEG00005020920	rif1	51	53.821	ENSFALG00000013874	RIF1	52	52.936	Ficedula_albicollis
ENSMZEG00005020920	rif1	71	50.077	ENSFDAG00000006538	RIF1	65	50.267	Fukomys_damarensis
ENSMZEG00005020920	rif1	99	73.517	ENSFHEG00000013721	rif1	99	69.401	Fundulus_heteroclitus
ENSMZEG00005020920	rif1	71	64.394	ENSGMOG00000003517	rif1	99	64.394	Gadus_morhua
ENSMZEG00005020920	rif1	62	52.915	ENSGALG00000012484	RIF1	66	52.915	Gallus_gallus
ENSMZEG00005020920	rif1	96	77.389	ENSGAFG00000017196	rif1	95	77.389	Gambusia_affinis
ENSMZEG00005020920	rif1	55	72.122	ENSGACG00000008579	rif1	95	72.034	Gasterosteus_aculeatus
ENSMZEG00005020920	rif1	72	52.365	ENSGAGG00000012595	RIF1	72	51.987	Gopherus_agassizii
ENSMZEG00005020920	rif1	58	59.078	ENSGGOG00000040178	RIF1	57	59.078	Gorilla_gorilla
ENSMZEG00005020920	rif1	99	96.461	ENSHBUG00000007125	rif1	96	96.461	Haplochromis_burtoni
ENSMZEG00005020920	rif1	66	51.084	ENSHGLG00100009807	RIF1	65	51.268	Heterocephalus_glaber_male
ENSMZEG00005020920	rif1	97	67.760	ENSHCOG00000015943	rif1	84	67.900	Hippocampus_comes
ENSMZEG00005020920	rif1	89	60.109	ENSIPUG00000021703	rif1	76	60.109	Ictalurus_punctatus
ENSMZEG00005020920	rif1	76	49.459	ENSSTOG00000020712	RIF1	69	50.073	Ictidomys_tridecemlineatus
ENSMZEG00005020920	rif1	76	46.574	ENSJJAG00000023000	Rif1	70	46.999	Jaculus_jaculus
ENSMZEG00005020920	rif1	99	60.150	ENSKMAG00000002852	rif1	99	61.294	Kryptolebias_marmoratus
ENSMZEG00005020920	rif1	97	76.006	ENSLBEG00000023196	rif1	84	76.075	Labrus_bergylta
ENSMZEG00005020920	rif1	72	53.655	ENSLACG00000005425	RIF1	70	53.614	Latimeria_chalumnae
ENSMZEG00005020920	rif1	79	56.300	ENSLOCG00000002657	rif1	79	56.537	Lepisosteus_oculatus
ENSMZEG00005020920	rif1	69	51.537	ENSLAFG00000009796	RIF1	65	51.537	Loxodonta_africana
ENSMZEG00005020920	rif1	68	50.870	ENSMFAG00000032233	RIF1	64	50.988	Macaca_fascicularis
ENSMZEG00005020920	rif1	68	50.870	ENSMMUG00000008611	RIF1	64	50.988	Macaca_mulatta
ENSMZEG00005020920	rif1	68	51.024	ENSMNEG00000031616	RIF1	64	51.104	Macaca_nemestrina
ENSMZEG00005020920	rif1	68	50.949	ENSMLEG00000042945	RIF1	63	51.192	Mandrillus_leucophaeus
ENSMZEG00005020920	rif1	99	60.778	ENSMAMG00000001745	rif1	69	72.398	Mastacembelus_armatus
ENSMZEG00005020920	rif1	59	53.912	ENSMGAG00000012732	RIF1	62	53.721	Meleagris_gallopavo
ENSMZEG00005020920	rif1	70	64.463	ENSMAUG00000013158	Rif1	67	64.463	Mesocricetus_auratus
ENSMZEG00005020920	rif1	71	50.420	ENSMICG00000046127	RIF1	64	50.343	Microcebus_murinus
ENSMZEG00005020920	rif1	73	47.336	ENSMOCG00000009381	Rif1	68	47.623	Microtus_ochrogaster
ENSMZEG00005020920	rif1	99	73.333	ENSMMOG00000006519	rif1	96	73.148	Mola_mola
ENSMZEG00005020920	rif1	73	49.815	ENSMODG00000003703	RIF1	68	49.889	Monodelphis_domestica
ENSMZEG00005020920	rif1	98	77.862	ENSMALG00000016759	rif1	96	77.578	Monopterus_albus
ENSMZEG00005020920	rif1	69	51.178	MGP_CAROLIEiJ_G0023555	Rif1	66	51.503	Mus_caroli
ENSMZEG00005020920	rif1	70	49.693	ENSMUSG00000036202	Rif1	65	50.000	Mus_musculus
ENSMZEG00005020920	rif1	68	48.421	MGP_PahariEiJ_G0025006	Rif1	71	46.037	Mus_pahari
ENSMZEG00005020920	rif1	70	50.467	MGP_SPRETEiJ_G0024476	Rif1	65	50.779	Mus_spretus
ENSMZEG00005020920	rif1	78	46.537	ENSMPUG00000000371	RIF1	72	46.356	Mustela_putorius_furo
ENSMZEG00005020920	rif1	57	48.067	ENSMLUG00000003376	RIF1	59	48.067	Myotis_lucifugus
ENSMZEG00005020920	rif1	72	49.924	ENSNGAG00000009268	Rif1	68	49.924	Nannospalax_galili
ENSMZEG00005020920	rif1	100	92.345	ENSNBRG00000014257	rif1	99	93.651	Neolamprologus_brichardi
ENSMZEG00005020920	rif1	72	48.882	ENSNLEG00000010955	RIF1	66	49.102	Nomascus_leucogenys
ENSMZEG00005020920	rif1	53	63.393	ENSMEUG00000007601	-	55	63.393	Notamacropus_eugenii
ENSMZEG00005020920	rif1	68	48.553	ENSODEG00000003950	RIF1	74	45.190	Octodon_degus
ENSMZEG00005020920	rif1	99	91.635	ENSONIG00000013657	rif1	96	93.375	Oreochromis_niloticus
ENSMZEG00005020920	rif1	59	55.556	ENSOANG00000006078	-	55	55.556	Ornithorhynchus_anatinus
ENSMZEG00005020920	rif1	72	49.387	ENSOCUG00000017435	RIF1	67	50.077	Oryctolagus_cuniculus
ENSMZEG00005020920	rif1	99	70.440	ENSORLG00020001302	rif1	95	70.253	Oryzias_latipes_hni
ENSMZEG00005020920	rif1	99	70.627	ENSORLG00015000009	rif1	96	70.440	Oryzias_latipes_hsok
ENSMZEG00005020920	rif1	99	70.638	ENSOMEG00000021513	rif1	99	51.358	Oryzias_melastigma
ENSMZEG00005020920	rif1	71	51.784	ENSOGAG00000006141	RIF1	65	51.784	Otolemur_garnettii
ENSMZEG00005020920	rif1	70	51.489	ENSOARG00000008930	RIF1	64	51.489	Ovis_aries
ENSMZEG00005020920	rif1	72	49.509	ENSPPAG00000023754	RIF1	66	49.509	Pan_paniscus
ENSMZEG00005020920	rif1	70	50.546	ENSPPRG00000003618	RIF1	64	50.624	Panthera_pardus
ENSMZEG00005020920	rif1	70	50.546	ENSPTIG00000020652	RIF1	64	50.624	Panthera_tigris_altaica
ENSMZEG00005020920	rif1	69	51.033	ENSPTRG00000012534	RIF1	63	51.033	Pan_troglodytes
ENSMZEG00005020920	rif1	68	51.028	ENSPANG00000008525	RIF1	64	51.272	Papio_anubis
ENSMZEG00005020920	rif1	94	63.506	ENSPKIG00000004267	rif1	79	57.950	Paramormyrops_kingsleyae
ENSMZEG00005020920	rif1	83	61.753	ENSPMGG00000016141	rif1	96	61.125	Periophthalmus_magnuspinnatus
ENSMZEG00005020920	rif1	72	50.585	ENSPEMG00000000446	Rif1	67	50.824	Peromyscus_maniculatus_bairdii
ENSMZEG00005020920	rif1	73	49.258	ENSPCIG00000009185	RIF1	69	49.258	Phascolarctos_cinereus
ENSMZEG00005020920	rif1	99	74.484	ENSPFOG00000017804	rif1	96	74.109	Poecilia_formosa
ENSMZEG00005020920	rif1	92	72.961	ENSPFOG00000000554	-	96	72.514	Poecilia_formosa
ENSMZEG00005020920	rif1	99	66.381	ENSPLAG00000017945	rif1	94	68.062	Poecilia_latipinna
ENSMZEG00005020920	rif1	89	72.082	ENSPMEG00000006897	-	96	71.600	Poecilia_mexicana
ENSMZEG00005020920	rif1	99	70.120	ENSPREG00000018052	rif1	99	71.728	Poecilia_reticulata
ENSMZEG00005020920	rif1	72	49.512	ENSPPYG00000012846	RIF1	66	49.660	Pongo_abelii
ENSMZEG00005020920	rif1	78	50.866	ENSPCOG00000027888	RIF1	72	51.221	Propithecus_coquereli
ENSMZEG00005020920	rif1	59	61.191	ENSPVAG00000014276	RIF1	57	61.191	Pteropus_vampyrus
ENSMZEG00005020920	rif1	100	96.560	ENSPNYG00000012940	rif1	100	96.560	Pundamilia_nyererei
ENSMZEG00005020920	rif1	91	63.456	ENSPNAG00000016685	rif1	75	63.456	Pygocentrus_nattereri
ENSMZEG00005020920	rif1	72	47.963	ENSRNOG00000054901	Rif1	74	45.819	Rattus_norvegicus
ENSMZEG00005020920	rif1	68	50.641	ENSRBIG00000003704	RIF1	63	50.803	Rhinopithecus_bieti
ENSMZEG00005020920	rif1	69	50.949	ENSRROG00000028206	RIF1	63	51.113	Rhinopithecus_roxellana
ENSMZEG00005020920	rif1	62	51.139	ENSSBOG00000029530	RIF1	59	51.139	Saimiri_boliviensis_boliviensis
ENSMZEG00005020920	rif1	70	51.150	ENSSHAG00000018552	RIF1	66	51.150	Sarcophilus_harrisii
ENSMZEG00005020920	rif1	84	60.440	ENSSFOG00015021539	rif1	84	60.440	Scleropages_formosus
ENSMZEG00005020920	rif1	99	64.306	ENSSMAG00000011704	rif1	95	64.306	Scophthalmus_maximus
ENSMZEG00005020920	rif1	99	69.346	ENSSDUG00000015632	rif1	98	78.585	Seriola_dumerili
ENSMZEG00005020920	rif1	99	79.163	ENSSLDG00000019531	rif1	97	78.884	Seriola_lalandi_dorsalis
ENSMZEG00005020920	rif1	75	52.062	ENSSPUG00000003062	RIF1	73	52.189	Sphenodon_punctatus
ENSMZEG00005020920	rif1	65	76.641	ENSSPAG00000018359	rif1	99	76.117	Stegastes_partitus
ENSMZEG00005020920	rif1	71	51.080	ENSSSCG00000016395	RIF1	65	51.235	Sus_scrofa
ENSMZEG00005020920	rif1	99	74.976	ENSTRUG00000015808	rif1	95	74.788	Takifugu_rubripes
ENSMZEG00005020920	rif1	99	57.387	ENSTNIG00000011538	rif1	86	69.626	Tetraodon_nigroviridis
ENSMZEG00005020920	rif1	63	51.724	ENSTBEG00000016082	RIF1	58	51.724	Tupaia_belangeri
ENSMZEG00005020920	rif1	72	50.076	ENSTTRG00000011190	RIF1	65	50.152	Tursiops_truncatus
ENSMZEG00005020920	rif1	70	48.876	ENSUAMG00000026385	RIF1	83	39.099	Ursus_americanus
ENSMZEG00005020920	rif1	81	50.795	ENSUMAG00000000337	RIF1	86	42.239	Ursus_maritimus
ENSMZEG00005020920	rif1	69	50.842	ENSVPAG00000002162	RIF1	62	50.842	Vicugna_pacos
ENSMZEG00005020920	rif1	70	51.456	ENSVVUG00000011293	RIF1	65	51.456	Vulpes_vulpes
ENSMZEG00005020920	rif1	76	47.644	ENSXETG00000004530	rif1	73	47.790	Xenopus_tropicalis
ENSMZEG00005020920	rif1	99	55.356	ENSXMAG00000000506	rif1	99	55.823	Xiphophorus_maculatus