EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005021254 (Gene tree)
Gene ID: 101471054
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 17086 bases
Position: chrLG16:9147920-9165005
Accession: 101471054
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005028506	SF3b1	PF08920.10	1.1e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005029410	-	5071	XM_004569832	ENSMZEP00005028506	1311 (aa)	XP_004569889	UPI00022B3BFC

Gene Model

Click here to download ENSMZEG00005021254's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005021254's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005021254	sf3b1	100	92.705	ENSG00000115524	SF3B1	100	92.857	Homo_sapiens
ENSMZEG00005021254	sf3b1	100	98.099	ENSAPOG00000011894	sf3b1	100	98.099	Acanthochromis_polyacanthus
ENSMZEG00005021254	sf3b1	99	92.584	ENSAMEG00000013809	SF3B1	99	92.737	Ailuropoda_melanoleuca
ENSMZEG00005021254	sf3b1	100	99.085	ENSACIG00000020910	sf3b1	97	99.085	Amphilophus_citrinellus
ENSMZEG00005021254	sf3b1	100	98.099	ENSAOCG00000004478	sf3b1	100	98.099	Amphiprion_ocellaris
ENSMZEG00005021254	sf3b1	100	98.099	ENSAPEG00000012937	sf3b1	100	98.099	Amphiprion_percula
ENSMZEG00005021254	sf3b1	100	97.641	ENSATEG00000020435	sf3b1	100	97.641	Anabas_testudineus
ENSMZEG00005021254	sf3b1	99	92.874	ENSAPLG00000003993	SF3B1	99	92.874	Anas_platyrhynchos
ENSMZEG00005021254	sf3b1	100	92.624	ENSACAG00000009612	SF3B1	100	92.624	Anolis_carolinensis
ENSMZEG00005021254	sf3b1	100	92.705	ENSANAG00000021577	SF3B1	100	94.264	Aotus_nancymaae
ENSMZEG00005021254	sf3b1	100	100.000	ENSACLG00000023470	sf3b1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005021254	sf3b1	100	95.973	ENSAMXG00000002219	sf3b1	100	95.973	Astyanax_mexicanus
ENSMZEG00005021254	sf3b1	100	92.705	ENSBTAG00000008915	SF3B1	100	92.857	Bos_taurus
ENSMZEG00005021254	sf3b1	99	64.554	WBGene00011605	sftb-1	99	64.628	Caenorhabditis_elegans
ENSMZEG00005021254	sf3b1	100	92.705	ENSCJAG00000003902	SF3B1	100	92.857	Callithrix_jacchus
ENSMZEG00005021254	sf3b1	100	92.705	ENSCAFG00000010826	SF3B1	100	92.857	Canis_familiaris
ENSMZEG00005021254	sf3b1	100	92.705	ENSCAFG00020004750	SF3B1	100	92.857	Canis_lupus_dingo
ENSMZEG00005021254	sf3b1	100	92.705	ENSCHIG00000015226	SF3B1	100	92.857	Capra_hircus
ENSMZEG00005021254	sf3b1	100	92.629	ENSTSYG00000009214	SF3B1	100	92.781	Carlito_syrichta
ENSMZEG00005021254	sf3b1	99	92.530	ENSCAPG00000006547	SF3B1	99	92.683	Cavia_aperea
ENSMZEG00005021254	sf3b1	99	92.649	ENSCPOG00000009353	SF3B1	100	92.802	Cavia_porcellus
ENSMZEG00005021254	sf3b1	100	92.705	ENSCCAG00000020506	SF3B1	100	92.857	Cebus_capucinus
ENSMZEG00005021254	sf3b1	100	92.705	ENSCATG00000035735	SF3B1	100	92.857	Cercocebus_atys
ENSMZEG00005021254	sf3b1	99	92.655	ENSCLAG00000014767	SF3B1	99	92.808	Chinchilla_lanigera
ENSMZEG00005021254	sf3b1	100	92.705	ENSCSAG00000011505	SF3B1	100	92.857	Chlorocebus_sabaeus
ENSMZEG00005021254	sf3b1	76	91.676	ENSCHOG00000009860	SF3B1	76	91.676	Choloepus_hoffmanni
ENSMZEG00005021254	sf3b1	100	92.846	ENSCPBG00000021902	SF3B1	99	94.192	Chrysemys_picta_bellii
ENSMZEG00005021254	sf3b1	68	77.535	ENSCING00000002558	-	99	77.949	Ciona_intestinalis
ENSMZEG00005021254	sf3b1	99	79.609	ENSCSAVG00000002559	-	99	79.609	Ciona_savignyi
ENSMZEG00005021254	sf3b1	100	92.705	ENSCANG00000029415	SF3B1	100	92.857	Colobus_angolensis_palliatus
ENSMZEG00005021254	sf3b1	100	92.705	ENSCGRG00001016990	Sf3b1	100	92.857	Cricetulus_griseus_chok1gshd
ENSMZEG00005021254	sf3b1	100	92.705	ENSCGRG00000005301	Sf3b1	100	92.857	Cricetulus_griseus_crigri
ENSMZEG00005021254	sf3b1	100	93.075	ENSCSEG00000003860	sf3b1	100	93.075	Cynoglossus_semilaevis
ENSMZEG00005021254	sf3b1	96	97.308	ENSCVAG00000003680	sf3b1	99	97.308	Cyprinodon_variegatus
ENSMZEG00005021254	sf3b1	100	94.525	ENSDARG00000056138	sf3b1	100	94.525	Danio_rerio
ENSMZEG00005021254	sf3b1	100	92.635	ENSDNOG00000011754	SF3B1	100	92.787	Dasypus_novemcinctus
ENSMZEG00005021254	sf3b1	99	90.735	ENSDORG00000002399	Sf3b1	100	90.735	Dipodomys_ordii
ENSMZEG00005021254	sf3b1	100	76.026	FBgn0031266	Sf3b1	100	76.026	Drosophila_melanogaster
ENSMZEG00005021254	sf3b1	83	91.284	ENSETEG00000009188	SF3B1	100	91.468	Echinops_telfairi
ENSMZEG00005021254	sf3b1	99	85.290	ENSEBUG00000004325	sf3b1	100	88.296	Eptatretus_burgeri
ENSMZEG00005021254	sf3b1	100	92.705	ENSEASG00005020159	SF3B1	98	92.857	Equus_asinus_asinus
ENSMZEG00005021254	sf3b1	100	92.705	ENSECAG00000021657	SF3B1	98	92.857	Equus_caballus
ENSMZEG00005021254	sf3b1	81	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSMZEG00005021254	sf3b1	100	95.091	ENSELUG00000005977	sf3b1	98	95.091	Esox_lucius
ENSMZEG00005021254	sf3b1	100	92.705	ENSFCAG00000005038	SF3B1	100	92.857	Felis_catus
ENSMZEG00005021254	sf3b1	99	92.950	ENSFALG00000004281	SF3B1	99	92.950	Ficedula_albicollis
ENSMZEG00005021254	sf3b1	100	92.705	ENSFDAG00000017510	SF3B1	100	92.857	Fukomys_damarensis
ENSMZEG00005021254	sf3b1	100	96.502	ENSFHEG00000014333	sf3b1	100	96.502	Fundulus_heteroclitus
ENSMZEG00005021254	sf3b1	100	94.989	ENSGMOG00000006773	sf3b1	100	94.989	Gadus_morhua
ENSMZEG00005021254	sf3b1	100	92.922	ENSGALG00000008038	SF3B1	100	92.922	Gallus_gallus
ENSMZEG00005021254	sf3b1	98	97.375	ENSGAFG00000000704	sf3b1	100	97.375	Gambusia_affinis
ENSMZEG00005021254	sf3b1	100	95.745	ENSGACG00000008839	sf3b1	100	95.745	Gasterosteus_aculeatus
ENSMZEG00005021254	sf3b1	100	92.215	ENSGAGG00000017478	SF3B1	100	92.215	Gopherus_agassizii
ENSMZEG00005021254	sf3b1	99	87.366	ENSGGOG00000009264	SF3B1	99	87.596	Gorilla_gorilla
ENSMZEG00005021254	sf3b1	99	100.000	ENSHBUG00000007705	sf3b1	100	100.000	Haplochromis_burtoni
ENSMZEG00005021254	sf3b1	99	92.655	ENSHGLG00000008285	-	99	92.808	Heterocephalus_glaber_female
ENSMZEG00005021254	sf3b1	99	90.666	ENSHGLG00100005535	-	99	90.819	Heterocephalus_glaber_male
ENSMZEG00005021254	sf3b1	100	96.067	ENSHCOG00000016775	sf3b1	100	96.067	Hippocampus_comes
ENSMZEG00005021254	sf3b1	100	95.741	ENSIPUG00000013171	sf3b1	100	95.741	Ictalurus_punctatus
ENSMZEG00005021254	sf3b1	100	92.705	ENSSTOG00000011034	SF3B1	100	92.857	Ictidomys_tridecemlineatus
ENSMZEG00005021254	sf3b1	99	92.627	ENSJJAG00000010903	Sf3b1	99	92.780	Jaculus_jaculus
ENSMZEG00005021254	sf3b1	100	96.737	ENSKMAG00000004009	sf3b1	100	96.737	Kryptolebias_marmoratus
ENSMZEG00005021254	sf3b1	100	96.347	ENSLBEG00000022208	sf3b1	100	96.347	Labrus_bergylta
ENSMZEG00005021254	sf3b1	99	89.658	ENSLACG00000014832	SF3B1	99	89.658	Latimeria_chalumnae
ENSMZEG00005021254	sf3b1	100	94.322	ENSLOCG00000003899	sf3b1	100	94.322	Lepisosteus_oculatus
ENSMZEG00005021254	sf3b1	100	92.705	ENSLAFG00000001956	SF3B1	100	92.857	Loxodonta_africana
ENSMZEG00005021254	sf3b1	99	92.655	ENSMMUG00000022430	SF3B1	99	92.808	Macaca_mulatta
ENSMZEG00005021254	sf3b1	100	92.705	ENSMNEG00000042333	SF3B1	100	94.264	Macaca_nemestrina
ENSMZEG00005021254	sf3b1	94	88.084	ENSMLEG00000026141	SF3B1	98	87.961	Mandrillus_leucophaeus
ENSMZEG00005021254	sf3b1	100	97.717	ENSMAMG00000010241	sf3b1	100	97.717	Mastacembelus_armatus
ENSMZEG00005021254	sf3b1	99	92.337	ENSMGAG00000007017	SF3B1	99	92.337	Meleagris_gallopavo
ENSMZEG00005021254	sf3b1	99	88.447	ENSMAUG00000009071	Sf3b1	99	88.600	Mesocricetus_auratus
ENSMZEG00005021254	sf3b1	100	92.705	ENSMICG00000013879	SF3B1	100	92.857	Microcebus_murinus
ENSMZEG00005021254	sf3b1	99	88.379	ENSMOCG00000000455	Sf3b1	99	88.379	Microtus_ochrogaster
ENSMZEG00005021254	sf3b1	84	96.997	ENSMMOG00000000475	sf3b1	100	96.997	Mola_mola
ENSMZEG00005021254	sf3b1	100	92.097	ENSMODG00000012275	SF3B1	100	92.249	Monodelphis_domestica
ENSMZEG00005021254	sf3b1	100	97.717	ENSMALG00000017211	sf3b1	100	97.717	Monopterus_albus
ENSMZEG00005021254	sf3b1	100	92.705	MGP_CAROLIEiJ_G0014141	Sf3b1	100	92.857	Mus_caroli
ENSMZEG00005021254	sf3b1	100	92.705	ENSMUSG00000025982	Sf3b1	100	92.857	Mus_musculus
ENSMZEG00005021254	sf3b1	100	92.705	MGP_SPRETEiJ_G0014947	Sf3b1	100	92.857	Mus_spretus
ENSMZEG00005021254	sf3b1	100	92.705	ENSMPUG00000007799	SF3B1	100	92.857	Mustela_putorius_furo
ENSMZEG00005021254	sf3b1	100	91.565	ENSMLUG00000000840	SF3B1	100	91.717	Myotis_lucifugus
ENSMZEG00005021254	sf3b1	99	92.378	ENSNGAG00000021884	-	100	92.530	Nannospalax_galili
ENSMZEG00005021254	sf3b1	100	94.673	ENSNBRG00000015816	sf3b1	100	94.673	Neolamprologus_brichardi
ENSMZEG00005021254	sf3b1	100	92.705	ENSNLEG00000006861	SF3B1	100	92.857	Nomascus_leucogenys
ENSMZEG00005021254	sf3b1	63	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSMZEG00005021254	sf3b1	100	80.149	ENSOPRG00000008596	SF3B1	100	80.297	Ochotona_princeps
ENSMZEG00005021254	sf3b1	100	92.705	ENSODEG00000011153	-	100	92.857	Octodon_degus
ENSMZEG00005021254	sf3b1	100	100.000	ENSONIG00000013758	sf3b1	100	100.000	Oreochromis_niloticus
ENSMZEG00005021254	sf3b1	82	95.387	ENSOCUG00000012722	-	96	95.387	Oryctolagus_cuniculus
ENSMZEG00005021254	sf3b1	100	97.032	ENSORLG00000020219	sf3b1	100	97.032	Oryzias_latipes
ENSMZEG00005021254	sf3b1	100	97.032	ENSORLG00020001746	sf3b1	100	97.032	Oryzias_latipes_hni
ENSMZEG00005021254	sf3b1	64	95.018	ENSORLG00015001759	sf3b1	98	95.018	Oryzias_latipes_hsok
ENSMZEG00005021254	sf3b1	100	97.414	ENSOMEG00000019231	sf3b1	100	97.414	Oryzias_melastigma
ENSMZEG00005021254	sf3b1	100	92.705	ENSOARG00000015374	SF3B1	100	92.857	Ovis_aries
ENSMZEG00005021254	sf3b1	100	92.705	ENSPPAG00000035007	SF3B1	100	92.857	Pan_paniscus
ENSMZEG00005021254	sf3b1	100	92.705	ENSPPRG00000009090	SF3B1	100	92.857	Panthera_pardus
ENSMZEG00005021254	sf3b1	100	92.705	ENSPTIG00000021557	SF3B1	100	92.857	Panthera_tigris_altaica
ENSMZEG00005021254	sf3b1	99	85.267	ENSPTRG00000012771	SF3B1	99	85.344	Pan_troglodytes
ENSMZEG00005021254	sf3b1	100	92.705	ENSPANG00000013417	SF3B1	100	92.857	Papio_anubis
ENSMZEG00005021254	sf3b1	99	95.209	ENSPKIG00000000784	sf3b1	99	95.209	Paramormyrops_kingsleyae
ENSMZEG00005021254	sf3b1	99	91.718	ENSPSIG00000017222	SF3B1	98	91.718	Pelodiscus_sinensis
ENSMZEG00005021254	sf3b1	91	96.390	ENSPMGG00000004330	sf3b1	99	96.390	Periophthalmus_magnuspinnatus
ENSMZEG00005021254	sf3b1	99	92.655	ENSPEMG00000010699	Sf3b1	100	92.808	Peromyscus_maniculatus_bairdii
ENSMZEG00005021254	sf3b1	99	88.275	ENSPMAG00000001311	sf3b1	99	88.578	Petromyzon_marinus
ENSMZEG00005021254	sf3b1	100	92.173	ENSPCIG00000010642	SF3B1	100	92.325	Phascolarctos_cinereus
ENSMZEG00005021254	sf3b1	100	97.416	ENSPFOG00000000073	sf3b1	100	97.416	Poecilia_formosa
ENSMZEG00005021254	sf3b1	100	97.414	ENSPLAG00000002293	sf3b1	100	97.414	Poecilia_latipinna
ENSMZEG00005021254	sf3b1	100	97.490	ENSPMEG00000000446	sf3b1	98	97.490	Poecilia_mexicana
ENSMZEG00005021254	sf3b1	100	97.567	ENSPREG00000019652	sf3b1	100	97.567	Poecilia_reticulata
ENSMZEG00005021254	sf3b1	100	96.307	ENSPPYG00000013044	SF3B1	95	96.307	Pongo_abelii
ENSMZEG00005021254	sf3b1	100	92.553	ENSPCAG00000009292	SF3B1	100	92.705	Procavia_capensis
ENSMZEG00005021254	sf3b1	100	92.705	ENSPCOG00000024074	SF3B1	100	92.857	Propithecus_coquereli
ENSMZEG00005021254	sf3b1	100	92.705	ENSPVAG00000008302	SF3B1	100	92.857	Pteropus_vampyrus
ENSMZEG00005021254	sf3b1	100	99.924	ENSPNYG00000014939	sf3b1	100	99.924	Pundamilia_nyererei
ENSMZEG00005021254	sf3b1	100	95.897	ENSPNAG00000008288	sf3b1	100	95.897	Pygocentrus_nattereri
ENSMZEG00005021254	sf3b1	100	92.705	ENSRNOG00000013516	Sf3b1	100	92.857	Rattus_norvegicus
ENSMZEG00005021254	sf3b1	99	88.965	ENSRBIG00000026096	SF3B1	100	89.117	Rhinopithecus_bieti
ENSMZEG00005021254	sf3b1	100	92.705	ENSRROG00000031308	SF3B1	100	92.857	Rhinopithecus_roxellana
ENSMZEG00005021254	sf3b1	100	92.705	ENSSBOG00000020080	SF3B1	100	92.857	Saimiri_boliviensis_boliviensis
ENSMZEG00005021254	sf3b1	100	92.097	ENSSHAG00000017564	SF3B1	100	92.249	Sarcophilus_harrisii
ENSMZEG00005021254	sf3b1	100	95.513	ENSSFOG00015021535	sf3b1	100	95.513	Scleropages_formosus
ENSMZEG00005021254	sf3b1	99	96.813	ENSSMAG00000013977	sf3b1	99	96.813	Scophthalmus_maximus
ENSMZEG00005021254	sf3b1	100	97.793	ENSSDUG00000017422	sf3b1	100	97.793	Seriola_dumerili
ENSMZEG00005021254	sf3b1	100	97.717	ENSSLDG00000019495	sf3b1	100	97.717	Seriola_lalandi_dorsalis
ENSMZEG00005021254	sf3b1	75	98.768	ENSSARG00000007016	SF3B1	76	98.768	Sorex_araneus
ENSMZEG00005021254	sf3b1	100	92.618	ENSSPUG00000000410	SF3B1	100	92.618	Sphenodon_punctatus
ENSMZEG00005021254	sf3b1	100	98.250	ENSSPAG00000010451	sf3b1	99	98.250	Stegastes_partitus
ENSMZEG00005021254	sf3b1	89	94.264	ENSSSCG00000016075	SF3B1	100	94.264	Sus_scrofa
ENSMZEG00005021254	sf3b1	100	92.922	ENSTGUG00000010553	SF3B1	100	92.922	Taeniopygia_guttata
ENSMZEG00005021254	sf3b1	100	96.575	ENSTRUG00000015534	sf3b1	100	96.575	Takifugu_rubripes
ENSMZEG00005021254	sf3b1	84	96.384	ENSTBEG00000008714	SF3B1	93	96.384	Tupaia_belangeri
ENSMZEG00005021254	sf3b1	92	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSMZEG00005021254	sf3b1	94	81.789	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSMZEG00005021254	sf3b1	100	92.705	ENSUMAG00000020945	SF3B1	100	92.857	Ursus_maritimus
ENSMZEG00005021254	sf3b1	95	92.683	ENSVPAG00000005798	SF3B1	96	92.683	Vicugna_pacos
ENSMZEG00005021254	sf3b1	100	92.705	ENSVVUG00000025948	SF3B1	95	92.857	Vulpes_vulpes
ENSMZEG00005021254	sf3b1	100	91.185	ENSXETG00000013339	sf3b1	100	91.185	Xenopus_tropicalis
ENSMZEG00005021254	sf3b1	100	92.852	ENSXCOG00000018086	sf3b1	100	93.156	Xiphophorus_couchianus
ENSMZEG00005021254	sf3b1	100	97.338	ENSXMAG00000007369	sf3b1	100	97.381	Xiphophorus_maculatus