EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005021465 (Gene tree)
Gene ID: 101466280
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 20206 bases
Position: chrLG3:22166443-22186648
Accession: 101466280
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	1	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	2	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	3	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	4	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	5	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	6	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	7	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	8	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	9	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	10	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	11	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	12	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	13	14
ENSMZEP00005028782	KH_1	PF00013.29	1e-185	14	14
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	1	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	2	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	3	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	4	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	5	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	6	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	7	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	8	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	9	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	10	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	11	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	12	13
ENSMZEP00005028792	KH_1	PF00013.29	9.8e-175	13	13

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005029691	-	4122	XM_004562718	ENSMZEP00005028782	1268 (aa)	XP_004562775	UPI0003296F0C
ENSMZET00005029701	-	3561	-	ENSMZEP00005028792	1186 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005021465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005021465's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005021465	hdlbpb	100	97.397	ENSAPOG00000006904	hdlbpb	100	97.397	Acanthochromis_polyacanthus
ENSMZEG00005021465	hdlbpb	100	92.386	ENSACIG00000016154	hdlbpb	100	93.328	Amphilophus_citrinellus
ENSMZEG00005021465	hdlbpb	100	97.950	ENSAOCG00000004083	hdlbpb	100	97.950	Amphiprion_ocellaris
ENSMZEG00005021465	hdlbpb	100	97.871	ENSAPEG00000012270	hdlbpb	100	97.871	Amphiprion_percula
ENSMZEG00005021465	hdlbpb	100	96.372	ENSATEG00000019877	hdlbpb	100	96.372	Anabas_testudineus
ENSMZEG00005021465	hdlbpb	100	81.940	ENSACAG00000003606	-	100	81.940	Anolis_carolinensis
ENSMZEG00005021465	hdlbpb	100	100.000	ENSACLG00000006618	hdlbpb	100	100.000	Astatotilapia_calliptera
ENSMZEG00005021465	hdlbpb	100	78.206	ENSAMXG00000019946	hdlbpb	100	78.206	Astyanax_mexicanus
ENSMZEG00005021465	hdlbpb	100	95.741	ENSCSEG00000000955	hdlbpb	100	95.741	Cynoglossus_semilaevis
ENSMZEG00005021465	hdlbpb	100	95.505	ENSCVAG00000005345	hdlbpb	100	95.505	Cyprinodon_variegatus
ENSMZEG00005021465	hdlbpb	99	85.478	ENSDARG00000061864	hdlbpb	99	85.399	Danio_rerio
ENSMZEG00005021465	hdlbpb	92	70.342	ENSEBUG00000005304	hdlbpb	94	71.142	Eptatretus_burgeri
ENSMZEG00005021465	hdlbpb	100	78.476	ENSELUG00000019925	hdlbpb	100	78.476	Esox_lucius
ENSMZEG00005021465	hdlbpb	100	84.322	ENSFHEG00000001701	hdlbpb	100	90.536	Fundulus_heteroclitus
ENSMZEG00005021465	hdlbpb	95	87.362	ENSGMOG00000004522	hdlbpb	78	87.362	Gadus_morhua
ENSMZEG00005021465	hdlbpb	100	95.662	ENSGAFG00000005278	hdlbpb	100	95.662	Gambusia_affinis
ENSMZEG00005021465	hdlbpb	99	92.265	ENSGACG00000019361	hdlbpb	100	92.265	Gasterosteus_aculeatus
ENSMZEG00005021465	hdlbpb	100	99.842	ENSHBUG00000018434	hdlbpb	100	99.842	Haplochromis_burtoni
ENSMZEG00005021465	hdlbpb	100	85.512	ENSIPUG00000003291	HDLBP	100	85.876	Ictalurus_punctatus
ENSMZEG00005021465	hdlbpb	100	96.372	ENSKMAG00000016562	hdlbpb	100	96.372	Kryptolebias_marmoratus
ENSMZEG00005021465	hdlbpb	100	96.451	ENSLBEG00000027855	hdlbpb	100	96.451	Labrus_bergylta
ENSMZEG00005021465	hdlbpb	100	84.960	ENSLACG00000007661	hdlbpb	90	84.960	Latimeria_chalumnae
ENSMZEG00005021465	hdlbpb	100	83.136	ENSLOCG00000013909	hdlbpb	100	83.136	Lepisosteus_oculatus
ENSMZEG00005021465	hdlbpb	100	97.161	ENSMAMG00000003035	hdlbpb	100	97.161	Mastacembelus_armatus
ENSMZEG00005021465	hdlbpb	100	94.874	ENSMMOG00000012525	hdlbpb	100	94.874	Mola_mola
ENSMZEG00005021465	hdlbpb	100	94.795	ENSMALG00000008938	hdlbpb	100	94.795	Monopterus_albus
ENSMZEG00005021465	hdlbpb	100	99.842	ENSNBRG00000002236	hdlbpb	100	99.842	Neolamprologus_brichardi
ENSMZEG00005021465	hdlbpb	100	99.527	ENSONIG00000009211	hdlbpb	100	99.527	Oreochromis_niloticus
ENSMZEG00005021465	hdlbpb	100	95.268	ENSORLG00000006581	hdlbpb	100	95.268	Oryzias_latipes
ENSMZEG00005021465	hdlbpb	100	95.268	ENSORLG00020010012	hdlbpb	100	95.268	Oryzias_latipes_hni
ENSMZEG00005021465	hdlbpb	100	95.505	ENSORLG00015006863	hdlbpb	100	95.505	Oryzias_latipes_hsok
ENSMZEG00005021465	hdlbpb	100	95.347	ENSOMEG00000011131	hdlbpb	100	95.347	Oryzias_melastigma
ENSMZEG00005021465	hdlbpb	100	88.801	ENSPKIG00000005966	hdlbpb	100	88.801	Paramormyrops_kingsleyae
ENSMZEG00005021465	hdlbpb	86	93.056	ENSPMGG00000019853	hdlbpb	99	93.056	Periophthalmus_magnuspinnatus
ENSMZEG00005021465	hdlbpb	92	66.438	ENSPMAG00000000249	-	99	66.225	Petromyzon_marinus
ENSMZEG00005021465	hdlbpb	94	74.890	ENSPMAG00000002131	hdlbpb	100	74.890	Petromyzon_marinus
ENSMZEG00005021465	hdlbpb	100	94.930	ENSPFOG00000008755	hdlbpb	100	94.930	Poecilia_formosa
ENSMZEG00005021465	hdlbpb	100	95.978	ENSPLAG00000007055	hdlbpb	100	95.978	Poecilia_latipinna
ENSMZEG00005021465	hdlbpb	100	95.899	ENSPMEG00000001952	hdlbpb	100	95.899	Poecilia_mexicana
ENSMZEG00005021465	hdlbpb	100	96.057	ENSPREG00000012848	hdlbpb	100	96.057	Poecilia_reticulata
ENSMZEG00005021465	hdlbpb	100	99.685	ENSPNYG00000022467	hdlbpb	100	99.685	Pundamilia_nyererei
ENSMZEG00005021465	hdlbpb	100	87.618	ENSPNAG00000011104	hdlbpb	100	87.618	Pygocentrus_nattereri
ENSMZEG00005021465	hdlbpb	100	88.091	ENSSFOG00015023199	hdlbpb	100	88.091	Scleropages_formosus
ENSMZEG00005021465	hdlbpb	100	96.845	ENSSMAG00000008790	hdlbpb	100	96.845	Scophthalmus_maximus
ENSMZEG00005021465	hdlbpb	100	97.634	ENSSDUG00000020694	hdlbpb	100	97.634	Seriola_dumerili
ENSMZEG00005021465	hdlbpb	100	97.161	ENSSLDG00000020807	hdlbpb	100	97.161	Seriola_lalandi_dorsalis
ENSMZEG00005021465	hdlbpb	100	82.571	ENSSPUG00000018688	-	100	82.571	Sphenodon_punctatus
ENSMZEG00005021465	hdlbpb	100	97.792	ENSSPAG00000016969	hdlbpb	100	97.792	Stegastes_partitus
ENSMZEG00005021465	hdlbpb	98	92.874	ENSTRUG00000012888	hdlbpb	99	92.795	Takifugu_rubripes
ENSMZEG00005021465	hdlbpb	99	93.892	ENSTNIG00000002555	hdlbpb	100	93.892	Tetraodon_nigroviridis
ENSMZEG00005021465	hdlbpb	100	83.871	ENSXCOG00000001797	hdlbpb	100	83.871	Xiphophorus_couchianus
ENSMZEG00005021465	hdlbpb	100	95.426	ENSXMAG00000015633	hdlbpb	100	95.426	Xiphophorus_maculatus