EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005021571 (Gene tree)
Gene ID: 101472608
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 4087 bases
Position: chrLG16:10733855-10737941
Accession: 101472608
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005028923	Smg4_UPF3	PF03467.15	1.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005029839	-	1446	XM_004567956	ENSMZEP00005028923	481 (aa)	XP_004568013	-

Gene Model

Click here to download ENSMZEG00005021571's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005021571's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005021571	upf3a	89	54.889	ENSG00000169062	UPF3A	90	54.889	Homo_sapiens
ENSMZEG00005021571	upf3a	100	93.139	ENSAPOG00000013484	upf3a	100	93.139	Acanthochromis_polyacanthus
ENSMZEG00005021571	upf3a	98	95.588	ENSACIG00000020468	upf3a	99	95.588	Amphilophus_citrinellus
ENSMZEG00005021571	upf3a	58	62.207	ENSAOCG00000000706	upf3b	93	48.565	Amphiprion_ocellaris
ENSMZEG00005021571	upf3a	100	93.555	ENSAOCG00000020784	upf3a	100	93.555	Amphiprion_ocellaris
ENSMZEG00005021571	upf3a	100	93.555	ENSAPEG00000003519	upf3a	100	93.555	Amphiprion_percula
ENSMZEG00005021571	upf3a	100	90.852	ENSATEG00000005843	upf3a	100	90.852	Anabas_testudineus
ENSMZEG00005021571	upf3a	83	63.923	ENSACAG00000001540	UPF3A	99	61.697	Anolis_carolinensis
ENSMZEG00005021571	upf3a	93	50.813	ENSANAG00000021713	UPF3A	99	51.411	Aotus_nancymaae
ENSMZEG00005021571	upf3a	100	100.000	ENSACLG00000026274	upf3a	100	100.000	Astatotilapia_calliptera
ENSMZEG00005021571	upf3a	98	80.297	ENSAMXG00000002608	upf3a	99	80.127	Astyanax_mexicanus
ENSMZEG00005021571	upf3a	93	52.842	ENSCJAG00000019102	UPF3A	95	53.053	Callithrix_jacchus
ENSMZEG00005021571	upf3a	85	44.111	ENSCAFG00020004074	UPF3B	69	67.442	Canis_lupus_dingo
ENSMZEG00005021571	upf3a	83	54.348	ENSCHIG00000008682	UPF3A	85	52.667	Capra_hircus
ENSMZEG00005021571	upf3a	76	53.506	ENSTSYG00000001918	UPF3A	99	53.488	Carlito_syrichta
ENSMZEG00005021571	upf3a	81	37.965	ENSCCAG00000029813	-	52	60.127	Cebus_capucinus
ENSMZEG00005021571	upf3a	93	53.474	ENSCCAG00000018406	UPF3A	99	52.419	Cebus_capucinus
ENSMZEG00005021571	upf3a	93	54.506	ENSCATG00000029733	UPF3A	95	54.721	Cercocebus_atys
ENSMZEG00005021571	upf3a	93	54.184	ENSCSAG00000017388	UPF3A	95	54.393	Chlorocebus_sabaeus
ENSMZEG00005021571	upf3a	79	59.318	ENSCGRG00001017387	Upf3a	89	57.743	Cricetulus_griseus_chok1gshd
ENSMZEG00005021571	upf3a	79	59.318	ENSCGRG00000001468	Upf3a	89	57.743	Cricetulus_griseus_crigri
ENSMZEG00005021571	upf3a	99	87.292	ENSCSEG00000005106	upf3a	99	87.292	Cynoglossus_semilaevis
ENSMZEG00005021571	upf3a	100	85.062	ENSCVAG00000022333	upf3a	100	85.062	Cyprinodon_variegatus
ENSMZEG00005021571	upf3a	98	78.647	ENSDARG00000069297	upf3a	99	78.481	Danio_rerio
ENSMZEG00005021571	upf3a	78	60.902	ENSDNOG00000034391	UPF3A	90	60.902	Dasypus_novemcinctus
ENSMZEG00005021571	upf3a	92	50.622	ENSETEG00000010110	UPF3A	96	50.622	Echinops_telfairi
ENSMZEG00005021571	upf3a	83	46.081	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSMZEG00005021571	upf3a	89	56.027	ENSEASG00005021884	UPF3A	88	55.227	Equus_asinus_asinus
ENSMZEG00005021571	upf3a	83	46.081	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSMZEG00005021571	upf3a	98	81.002	ENSELUG00000011050	upf3a	99	80.833	Esox_lucius
ENSMZEG00005021571	upf3a	90	55.748	ENSFCAG00000014602	UPF3A	92	55.748	Felis_catus
ENSMZEG00005021571	upf3a	100	86.100	ENSGAFG00000021170	upf3a	100	86.100	Gambusia_affinis
ENSMZEG00005021571	upf3a	67	84.375	ENSGACG00000001972	upf3a	100	84.375	Gasterosteus_aculeatus
ENSMZEG00005021571	upf3a	89	43.908	ENSGGOG00000043074	-	86	44.056	Gorilla_gorilla
ENSMZEG00005021571	upf3a	89	55.329	ENSGGOG00000015428	UPF3A	90	55.111	Gorilla_gorilla
ENSMZEG00005021571	upf3a	81	46.701	ENSGGOG00000041219	-	85	45.161	Gorilla_gorilla
ENSMZEG00005021571	upf3a	100	96.050	ENSHBUG00000011325	upf3a	100	96.050	Haplochromis_burtoni
ENSMZEG00005021571	upf3a	73	56.948	ENSHGLG00000001544	UPF3A	50	66.825	Heterocephalus_glaber_female
ENSMZEG00005021571	upf3a	73	56.948	ENSHGLG00100013244	UPF3A	50	66.825	Heterocephalus_glaber_male
ENSMZEG00005021571	upf3a	95	77.778	ENSHCOG00000013985	upf3a	94	78.384	Hippocampus_comes
ENSMZEG00005021571	upf3a	98	78.013	ENSIPUG00000023450	upf3a	99	77.848	Ictalurus_punctatus
ENSMZEG00005021571	upf3a	100	90.041	ENSKMAG00000004381	upf3a	100	90.041	Kryptolebias_marmoratus
ENSMZEG00005021571	upf3a	98	85.412	ENSLBEG00000021570	upf3a	100	84.632	Labrus_bergylta
ENSMZEG00005021571	upf3a	61	40.947	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSMZEG00005021571	upf3a	97	73.684	ENSLOCG00000002665	upf3a	98	73.684	Lepisosteus_oculatus
ENSMZEG00005021571	upf3a	93	53.664	ENSMFAG00000045016	UPF3A	95	53.448	Macaca_fascicularis
ENSMZEG00005021571	upf3a	88	56.075	ENSMMUG00000007449	UPF3A	95	54.923	Macaca_mulatta
ENSMZEG00005021571	upf3a	86	57.177	ENSMNEG00000036402	UPF3A	83	57.177	Macaca_nemestrina
ENSMZEG00005021571	upf3a	86	56.699	ENSMLEG00000014726	UPF3A	94	56.699	Mandrillus_leucophaeus
ENSMZEG00005021571	upf3a	100	92.931	ENSMAMG00000018364	upf3a	100	92.931	Mastacembelus_armatus
ENSMZEG00005021571	upf3a	86	61.358	ENSMGAG00000014837	UPF3A	99	61.358	Meleagris_gallopavo
ENSMZEG00005021571	upf3a	56	68.231	ENSMOCG00000000550	Upf3a	57	69.802	Microtus_ochrogaster
ENSMZEG00005021571	upf3a	100	89.813	ENSMMOG00000019751	upf3a	100	89.813	Mola_mola
ENSMZEG00005021571	upf3a	84	64.029	ENSMODG00000003159	UPF3A	93	64.833	Monodelphis_domestica
ENSMZEG00005021571	upf3a	79	60.938	MGP_PahariEiJ_G0021311	Upf3a	88	59.416	Mus_pahari
ENSMZEG00005021571	upf3a	92	53.571	ENSMPUG00000009139	UPF3A	94	53.571	Mustela_putorius_furo
ENSMZEG00005021571	upf3a	81	57.946	ENSMLUG00000015905	UPF3A	92	57.946	Myotis_lucifugus
ENSMZEG00005021571	upf3a	84	54.009	ENSNGAG00000019314	Upf3a	54	63.596	Nannospalax_galili
ENSMZEG00005021571	upf3a	100	95.842	ENSNBRG00000000828	upf3a	100	95.842	Neolamprologus_brichardi
ENSMZEG00005021571	upf3a	89	54.977	ENSNLEG00000007563	UPF3A	90	55.432	Nomascus_leucogenys
ENSMZEG00005021571	upf3a	100	94.628	ENSONIG00000006817	upf3a	100	94.628	Oreochromis_niloticus
ENSMZEG00005021571	upf3a	74	56.911	ENSOANG00000006985	-	95	57.453	Ornithorhynchus_anatinus
ENSMZEG00005021571	upf3a	100	85.239	ENSORLG00000010911	upf3a	100	85.239	Oryzias_latipes
ENSMZEG00005021571	upf3a	83	41.628	ENSORLG00020003758	upf3b	51	70.270	Oryzias_latipes_hni
ENSMZEG00005021571	upf3a	100	82.952	ENSORLG00020014317	upf3a	100	82.952	Oryzias_latipes_hni
ENSMZEG00005021571	upf3a	100	83.784	ENSORLG00015017339	upf3a	58	83.784	Oryzias_latipes_hsok
ENSMZEG00005021571	upf3a	100	85.863	ENSOMEG00000014425	upf3a	100	85.863	Oryzias_melastigma
ENSMZEG00005021571	upf3a	70	61.429	ENSOGAG00000004788	UPF3A	84	61.605	Otolemur_garnettii
ENSMZEG00005021571	upf3a	84	55.819	ENSOARG00000009004	UPF3A	84	55.819	Ovis_aries
ENSMZEG00005021571	upf3a	89	54.222	ENSPPAG00000042267	UPF3A	95	53.376	Pan_paniscus
ENSMZEG00005021571	upf3a	90	55.531	ENSPPRG00000025062	UPF3A	92	55.531	Panthera_pardus
ENSMZEG00005021571	upf3a	81	42.928	ENSPTRG00000051640	-	85	41.191	Pan_troglodytes
ENSMZEG00005021571	upf3a	89	54.222	ENSPTRG00000006073	UPF3A	95	53.376	Pan_troglodytes
ENSMZEG00005021571	upf3a	81	46.402	ENSPTRG00000041187	-	85	43.176	Pan_troglodytes
ENSMZEG00005021571	upf3a	93	55.054	ENSPANG00000004346	UPF3A	95	55.054	Papio_anubis
ENSMZEG00005021571	upf3a	94	47.551	ENSPKIG00000019226	upf3b	86	68.794	Paramormyrops_kingsleyae
ENSMZEG00005021571	upf3a	97	71.843	ENSPKIG00000004422	upf3a	100	71.224	Paramormyrops_kingsleyae
ENSMZEG00005021571	upf3a	83	64.734	ENSPSIG00000007468	UPF3A	96	64.734	Pelodiscus_sinensis
ENSMZEG00005021571	upf3a	100	84.189	ENSPMGG00000012696	upf3a	100	84.189	Periophthalmus_magnuspinnatus
ENSMZEG00005021571	upf3a	74	70.485	ENSPCIG00000019590	-	90	69.903	Phascolarctos_cinereus
ENSMZEG00005021571	upf3a	100	86.694	ENSPFOG00000013222	upf3a	100	86.694	Poecilia_formosa
ENSMZEG00005021571	upf3a	99	85.474	ENSPLAG00000011960	upf3a	100	85.474	Poecilia_latipinna
ENSMZEG00005021571	upf3a	100	86.957	ENSPMEG00000000836	upf3a	100	86.957	Poecilia_mexicana
ENSMZEG00005021571	upf3a	89	54.889	ENSPPYG00000005536	UPF3A	90	55.111	Pongo_abelii
ENSMZEG00005021571	upf3a	82	55.529	ENSPVAG00000005656	UPF3A	82	52.681	Pteropus_vampyrus
ENSMZEG00005021571	upf3a	100	100.000	ENSPNYG00000011289	upf3a	100	100.000	Pundamilia_nyererei
ENSMZEG00005021571	upf3a	84	48.975	ENSPNAG00000021528	upf3b	58	70.690	Pygocentrus_nattereri
ENSMZEG00005021571	upf3a	99	79.167	ENSPNAG00000019532	upf3a	100	79.368	Pygocentrus_nattereri
ENSMZEG00005021571	upf3a	88	55.944	ENSRBIG00000034007	UPF3A	93	55.658	Rhinopithecus_bieti
ENSMZEG00005021571	upf3a	85	56.835	ENSRROG00000012212	UPF3A	85	56.835	Rhinopithecus_roxellana
ENSMZEG00005021571	upf3a	78	52.764	ENSSBOG00000029989	UPF3A	95	47.510	Saimiri_boliviensis_boliviensis
ENSMZEG00005021571	upf3a	83	64.251	ENSSHAG00000009895	UPF3A	94	65.060	Sarcophilus_harrisii
ENSMZEG00005021571	upf3a	98	69.767	ENSSFOG00015021851	upf3a	99	68.776	Scleropages_formosus
ENSMZEG00005021571	upf3a	50	68.526	ENSSMAG00000012913	upf3b	53	74.233	Scophthalmus_maximus
ENSMZEG00005021571	upf3a	100	86.151	ENSSMAG00000003858	upf3a	100	87.373	Scophthalmus_maximus
ENSMZEG00005021571	upf3a	100	94.387	ENSSDUG00000009680	upf3a	100	94.387	Seriola_dumerili
ENSMZEG00005021571	upf3a	100	93.347	ENSSLDG00000009700	upf3a	100	93.347	Seriola_lalandi_dorsalis
ENSMZEG00005021571	upf3a	100	93.139	ENSSPAG00000007938	upf3a	100	92.100	Stegastes_partitus
ENSMZEG00005021571	upf3a	83	65.375	ENSTGUG00000009493	UPF3A	99	65.375	Taeniopygia_guttata
ENSMZEG00005021571	upf3a	98	84.144	ENSTRUG00000012730	upf3a	99	84.144	Takifugu_rubripes
ENSMZEG00005021571	upf3a	84	74.272	ENSTNIG00000014973	upf3a	100	73.786	Tetraodon_nigroviridis
ENSMZEG00005021571	upf3a	73	52.861	ENSTTRG00000015414	UPF3A	73	52.861	Tursiops_truncatus
ENSMZEG00005021571	upf3a	83	44.524	ENSVVUG00000011594	UPF3B	83	67.416	Vulpes_vulpes
ENSMZEG00005021571	upf3a	83	56.897	ENSXETG00000002572	upf3a	91	56.897	Xenopus_tropicalis
ENSMZEG00005021571	upf3a	82	45.084	ENSXETG00000007440	upf3b	71	72.393	Xenopus_tropicalis
ENSMZEG00005021571	upf3a	100	86.722	ENSXMAG00000013452	upf3a	100	86.722	Xiphophorus_maculatus