EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005021886 (Gene tree)
Gene ID: 112436164
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 31954 bases
Position: chrLG16:12139979-12171932
Accession: 112436164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005029344	CMS1	PF14617.6	9.4e-34	1	1
ENSMZEP00005029344	DEAD	PF00270.29	6.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005030265	-	1085	XM_024805431	ENSMZEP00005029344	291 (aa)	XP_024661199	UPI0003AF4B2D

Gene Model

Click here to download ENSMZEG00005021886's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005021886's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005021886	cmss1	100	49.342	ENSG00000184220	CMSS1	98	58.750	Homo_sapiens
ENSMZEG00005021886	cmss1	70	86.700	ENSAPOG00000010604	cmss1	96	73.946	Acanthochromis_polyacanthus
ENSMZEG00005021886	cmss1	83	55.967	ENSAMEG00000004092	CMSS1	78	61.084	Ailuropoda_melanoleuca
ENSMZEG00005021886	cmss1	90	83.969	ENSACIG00000021854	cmss1	98	84.231	Amphilophus_citrinellus
ENSMZEG00005021886	cmss1	100	78.694	ENSAOCG00000013361	cmss1	100	78.694	Amphiprion_ocellaris
ENSMZEG00005021886	cmss1	100	80.069	ENSAPEG00000005829	cmss1	100	79.381	Amphiprion_percula
ENSMZEG00005021886	cmss1	100	76.289	ENSATEG00000008209	cmss1	100	76.451	Anabas_testudineus
ENSMZEG00005021886	cmss1	69	63.366	ENSAPLG00000010542	CMSS1	88	63.366	Anas_platyrhynchos
ENSMZEG00005021886	cmss1	84	58.537	ENSACAG00000011065	CMSS1	74	64.356	Anolis_carolinensis
ENSMZEG00005021886	cmss1	100	49.141	ENSANAG00000023565	CMSS1	100	48.454	Aotus_nancymaae
ENSMZEG00005021886	cmss1	100	100.000	ENSACLG00000027294	cmss1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005021886	cmss1	100	59.184	ENSAMXG00000002046	cmss1	100	59.184	Astyanax_mexicanus
ENSMZEG00005021886	cmss1	100	49.333	ENSBTAG00000013663	CMSS1	100	48.675	Bos_taurus
ENSMZEG00005021886	cmss1	100	50.859	ENSCJAG00000000610	CMSS1	100	50.515	Callithrix_jacchus
ENSMZEG00005021886	cmss1	83	56.198	ENSCAFG00000009230	CMSS1	73	61.881	Canis_familiaris
ENSMZEG00005021886	cmss1	65	62.963	ENSCAFG00020024156	-	59	62.963	Canis_lupus_dingo
ENSMZEG00005021886	cmss1	83	56.198	ENSCAFG00020009464	-	74	61.881	Canis_lupus_dingo
ENSMZEG00005021886	cmss1	83	54.959	ENSCHIG00000013003	CMSS1	73	60.396	Capra_hircus
ENSMZEG00005021886	cmss1	83	55.785	ENSTSYG00000009266	CMSS1	78	61.881	Carlito_syrichta
ENSMZEG00005021886	cmss1	64	53.763	ENSCAPG00000013584	CMSS1	87	53.763	Cavia_aperea
ENSMZEG00005021886	cmss1	100	52.577	ENSCPOG00000014680	CMSS1	100	51.546	Cavia_porcellus
ENSMZEG00005021886	cmss1	100	51.203	ENSCCAG00000034685	CMSS1	100	50.515	Cebus_capucinus
ENSMZEG00005021886	cmss1	100	50.329	ENSCATG00000031980	CMSS1	100	49.013	Cercocebus_atys
ENSMZEG00005021886	cmss1	69	60.500	ENSCLAG00000011241	CMSS1	87	60.891	Chinchilla_lanigera
ENSMZEG00005021886	cmss1	69	62.376	ENSCSAG00000006024	CMSS1	82	62.376	Chlorocebus_sabaeus
ENSMZEG00005021886	cmss1	100	38.488	ENSCHOG00000012098	CMSS1	100	37.457	Choloepus_hoffmanni
ENSMZEG00005021886	cmss1	65	44.737	ENSCING00000014848	-	99	44.920	Ciona_intestinalis
ENSMZEG00005021886	cmss1	100	50.000	ENSCANG00000031337	CMSS1	100	48.684	Colobus_angolensis_palliatus
ENSMZEG00005021886	cmss1	100	48.797	ENSCGRG00001014305	Cmss1	100	49.141	Cricetulus_griseus_chok1gshd
ENSMZEG00005021886	cmss1	69	59.901	ENSCGRG00000006722	Cmss1	79	59.901	Cricetulus_griseus_crigri
ENSMZEG00005021886	cmss1	100	68.456	ENSCSEG00000004958	cmss1	100	69.799	Cynoglossus_semilaevis
ENSMZEG00005021886	cmss1	100	74.315	ENSCVAG00000005039	cmss1	100	73.973	Cyprinodon_variegatus
ENSMZEG00005021886	cmss1	100	59.524	ENSDARG00000112579	cmss1	100	58.923	Danio_rerio
ENSMZEG00005021886	cmss1	69	60.891	ENSDNOG00000040418	CMSS1	73	60.891	Dasypus_novemcinctus
ENSMZEG00005021886	cmss1	100	51.890	ENSDORG00000010461	Cmss1	100	49.338	Dipodomys_ordii
ENSMZEG00005021886	cmss1	69	60.000	ENSEASG00005010966	CMSS1	92	60.396	Equus_asinus_asinus
ENSMZEG00005021886	cmss1	69	59.500	ENSECAG00000015662	CMSS1	89	59.901	Equus_caballus
ENSMZEG00005021886	cmss1	69	44.000	ENSEEUG00000007624	-	73	44.554	Erinaceus_europaeus
ENSMZEG00005021886	cmss1	100	60.265	ENSELUG00000019459	cmss1	100	60.066	Esox_lucius
ENSMZEG00005021886	cmss1	100	51.546	ENSFCAG00000044577	CMSS1	100	50.859	Felis_catus
ENSMZEG00005021886	cmss1	69	62.376	ENSFALG00000005816	CMSS1	85	62.376	Ficedula_albicollis
ENSMZEG00005021886	cmss1	69	61.881	ENSFDAG00000012577	CMSS1	89	61.881	Fukomys_damarensis
ENSMZEG00005021886	cmss1	79	78.879	ENSFHEG00000012008	cmss1	94	78.947	Fundulus_heteroclitus
ENSMZEG00005021886	cmss1	99	68.403	ENSGMOG00000016729	cmss1	100	67.708	Gadus_morhua
ENSMZEG00005021886	cmss1	69	64.356	ENSGALG00000015267	CMSS1	77	64.356	Gallus_gallus
ENSMZEG00005021886	cmss1	92	76.952	ENSGAFG00000021217	cmss1	99	77.068	Gambusia_affinis
ENSMZEG00005021886	cmss1	99	72.569	ENSGACG00000002798	cmss1	100	72.222	Gasterosteus_aculeatus
ENSMZEG00005021886	cmss1	84	59.671	ENSGAGG00000019861	CMSS1	79	63.861	Gopherus_agassizii
ENSMZEG00005021886	cmss1	69	61.881	ENSGGOG00000014125	CMSS1	77	61.881	Gorilla_gorilla
ENSMZEG00005021886	cmss1	100	98.969	ENSHBUG00000008431	cmss1	100	98.969	Haplochromis_burtoni
ENSMZEG00005021886	cmss1	69	60.500	ENSHGLG00000019481	CMSS1	82	60.891	Heterocephalus_glaber_female
ENSMZEG00005021886	cmss1	69	60.500	ENSHGLG00100010314	CMSS1	81	60.891	Heterocephalus_glaber_male
ENSMZEG00005021886	cmss1	100	69.932	ENSHCOG00000003222	cmss1	100	68.136	Hippocampus_comes
ENSMZEG00005021886	cmss1	100	62.116	ENSIPUG00000011591	cmss1	100	59.727	Ictalurus_punctatus
ENSMZEG00005021886	cmss1	100	51.014	ENSSTOG00000019366	CMSS1	100	48.829	Ictidomys_tridecemlineatus
ENSMZEG00005021886	cmss1	100	51.203	ENSJJAG00000014894	Cmss1	90	62.376	Jaculus_jaculus
ENSMZEG00005021886	cmss1	92	68.284	ENSKMAG00000002390	cmss1	82	76.355	Kryptolebias_marmoratus
ENSMZEG00005021886	cmss1	91	67.910	ENSLBEG00000006298	cmss1	92	75.664	Labrus_bergylta
ENSMZEG00005021886	cmss1	69	63.861	ENSLACG00000009293	CMSS1	88	63.861	Latimeria_chalumnae
ENSMZEG00005021886	cmss1	100	53.608	ENSLOCG00000009391	cmss1	100	53.265	Lepisosteus_oculatus
ENSMZEG00005021886	cmss1	69	62.500	ENSLAFG00000017509	CMSS1	89	62.871	Loxodonta_africana
ENSMZEG00005021886	cmss1	100	49.671	ENSMFAG00000045006	CMSS1	100	48.684	Macaca_fascicularis
ENSMZEG00005021886	cmss1	100	49.342	ENSMMUG00000002939	CMSS1	100	48.355	Macaca_mulatta
ENSMZEG00005021886	cmss1	100	49.671	ENSMNEG00000031315	CMSS1	100	48.684	Macaca_nemestrina
ENSMZEG00005021886	cmss1	100	49.671	ENSMLEG00000033660	CMSS1	100	48.684	Mandrillus_leucophaeus
ENSMZEG00005021886	cmss1	100	79.381	ENSMAMG00000017176	cmss1	100	79.038	Mastacembelus_armatus
ENSMZEG00005021886	cmss1	69	64.356	ENSMGAG00000014360	CMSS1	89	64.356	Meleagris_gallopavo
ENSMZEG00005021886	cmss1	100	37.113	ENSMAUG00000020609	Cmss1	100	36.770	Mesocricetus_auratus
ENSMZEG00005021886	cmss1	100	52.577	ENSMICG00000048977	CMSS1	100	51.546	Microcebus_murinus
ENSMZEG00005021886	cmss1	100	51.014	ENSMOCG00000021937	Cmss1	100	50.512	Microtus_ochrogaster
ENSMZEG00005021886	cmss1	79	74.359	ENSMMOG00000019794	cmss1	84	79.803	Mola_mola
ENSMZEG00005021886	cmss1	82	53.968	ENSMODG00000002275	CMSS1	76	61.881	Monodelphis_domestica
ENSMZEG00005021886	cmss1	100	78.157	ENSMALG00000004250	cmss1	100	77.055	Monopterus_albus
ENSMZEG00005021886	cmss1	100	52.560	MGP_CAROLIEiJ_G0020824	Cmss1	100	51.203	Mus_caroli
ENSMZEG00005021886	cmss1	100	51.877	ENSMUSG00000022748	Cmss1	100	50.515	Mus_musculus
ENSMZEG00005021886	cmss1	100	51.877	MGP_PahariEiJ_G0016524	Cmss1	100	50.853	Mus_pahari
ENSMZEG00005021886	cmss1	100	51.536	MGP_SPRETEiJ_G0021724	Cmss1	100	50.512	Mus_spretus
ENSMZEG00005021886	cmss1	83	56.017	ENSMPUG00000011324	CMSS1	78	62.189	Mustela_putorius_furo
ENSMZEG00005021886	cmss1	83	56.557	ENSMLUG00000001131	CMSS1	78	63.235	Myotis_lucifugus
ENSMZEG00005021886	cmss1	100	50.859	ENSNGAG00000020316	Cmss1	100	50.515	Nannospalax_galili
ENSMZEG00005021886	cmss1	100	99.313	ENSNBRG00000003095	cmss1	100	99.313	Neolamprologus_brichardi
ENSMZEG00005021886	cmss1	100	50.000	ENSNLEG00000034172	CMSS1	100	49.342	Nomascus_leucogenys
ENSMZEG00005021886	cmss1	79	50.655	ENSMEUG00000014505	CMSS1	89	52.475	Notamacropus_eugenii
ENSMZEG00005021886	cmss1	100	51.020	ENSOPRG00000002986	CMSS1	100	49.834	Ochotona_princeps
ENSMZEG00005021886	cmss1	100	41.924	ENSODEG00000009446	-	100	42.268	Octodon_degus
ENSMZEG00005021886	cmss1	100	49.141	ENSODEG00000003558	-	100	48.454	Octodon_degus
ENSMZEG00005021886	cmss1	100	51.890	ENSODEG00000005226	-	100	51.546	Octodon_degus
ENSMZEG00005021886	cmss1	100	45.392	ENSODEG00000001853	-	100	43.986	Octodon_degus
ENSMZEG00005021886	cmss1	90	98.084	ENSONIG00000006678	cmss1	100	98.084	Oreochromis_niloticus
ENSMZEG00005021886	cmss1	75	60.274	ENSOANG00000007529	CMSS1	87	61.881	Ornithorhynchus_anatinus
ENSMZEG00005021886	cmss1	83	55.785	ENSOCUG00000025366	CMSS1	73	61.386	Oryctolagus_cuniculus
ENSMZEG00005021886	cmss1	100	71.478	ENSORLG00000020340	cmss1	100	71.478	Oryzias_latipes
ENSMZEG00005021886	cmss1	90	62.835	ENSORLG00020012235	cmss1	86	73.399	Oryzias_latipes_hni
ENSMZEG00005021886	cmss1	91	63.296	ENSORLG00015015551	cmss1	76	72.906	Oryzias_latipes_hsok
ENSMZEG00005021886	cmss1	100	73.196	ENSOMEG00000012555	cmss1	100	72.852	Oryzias_melastigma
ENSMZEG00005021886	cmss1	78	57.269	ENSOGAG00000002045	CMSS1	89	61.386	Otolemur_garnettii
ENSMZEG00005021886	cmss1	69	60.099	ENSOARG00000017899	CMSS1	70	60.099	Ovis_aries
ENSMZEG00005021886	cmss1	69	61.881	ENSPPAG00000038515	CMSS1	74	61.881	Pan_paniscus
ENSMZEG00005021886	cmss1	100	51.546	ENSPPRG00000016767	CMSS1	100	50.859	Panthera_pardus
ENSMZEG00005021886	cmss1	100	51.203	ENSPTIG00000018274	CMSS1	100	50.515	Panthera_tigris_altaica
ENSMZEG00005021886	cmss1	100	49.671	ENSPTRG00000015157	CMSS1	100	49.013	Pan_troglodytes
ENSMZEG00005021886	cmss1	69	62.376	ENSPANG00000019980	CMSS1	92	57.826	Papio_anubis
ENSMZEG00005021886	cmss1	96	60.357	ENSPKIG00000012609	cmss1	97	60.595	Paramormyrops_kingsleyae
ENSMZEG00005021886	cmss1	69	65.347	ENSPSIG00000003849	CMSS1	88	65.347	Pelodiscus_sinensis
ENSMZEG00005021886	cmss1	77	71.983	ENSPMGG00000010286	cmss1	88	78.431	Periophthalmus_magnuspinnatus
ENSMZEG00005021886	cmss1	100	50.859	ENSPEMG00000016384	Cmss1	100	49.828	Peromyscus_maniculatus_bairdii
ENSMZEG00005021886	cmss1	70	50.000	ENSPMAG00000001146	cmss1	99	50.246	Petromyzon_marinus
ENSMZEG00005021886	cmss1	83	56.198	ENSPCIG00000015656	CMSS1	77	61.386	Phascolarctos_cinereus
ENSMZEG00005021886	cmss1	100	78.082	ENSPFOG00000016849	cmss1	100	76.027	Poecilia_formosa
ENSMZEG00005021886	cmss1	100	77.740	ENSPLAG00000008323	cmss1	100	75.685	Poecilia_latipinna
ENSMZEG00005021886	cmss1	100	78.082	ENSPMEG00000021020	cmss1	100	76.712	Poecilia_mexicana
ENSMZEG00005021886	cmss1	89	79.693	ENSPREG00000007618	cmss1	90	78.868	Poecilia_reticulata
ENSMZEG00005021886	cmss1	100	49.671	ENSPPYG00000013606	CMSS1	100	49.013	Pongo_abelii
ENSMZEG00005021886	cmss1	100	53.265	ENSPCOG00000020035	CMSS1	100	52.234	Propithecus_coquereli
ENSMZEG00005021886	cmss1	100	43.986	ENSPVAG00000017031	CMSS1	100	42.384	Pteropus_vampyrus
ENSMZEG00005021886	cmss1	91	99.623	ENSPNYG00000013428	cmss1	97	99.623	Pundamilia_nyererei
ENSMZEG00005021886	cmss1	100	60.204	ENSPNAG00000007912	cmss1	100	59.864	Pygocentrus_nattereri
ENSMZEG00005021886	cmss1	69	61.881	ENSRNOG00000027888	Cmss1	79	61.881	Rattus_norvegicus
ENSMZEG00005021886	cmss1	100	49.342	ENSRBIG00000037931	CMSS1	100	48.973	Rhinopithecus_bieti
ENSMZEG00005021886	cmss1	100	49.342	ENSRROG00000042910	CMSS1	100	48.973	Rhinopithecus_roxellana
ENSMZEG00005021886	cmss1	69	61.386	ENSSBOG00000030980	CMSS1	77	61.386	Saimiri_boliviensis_boliviensis
ENSMZEG00005021886	cmss1	69	61.881	ENSSHAG00000009321	CMSS1	80	61.881	Sarcophilus_harrisii
ENSMZEG00005021886	cmss1	100	62.799	ENSSFOG00015001509	cmss1	100	62.500	Scleropages_formosus
ENSMZEG00005021886	cmss1	100	75.000	ENSSMAG00000001653	cmss1	100	74.490	Scophthalmus_maximus
ENSMZEG00005021886	cmss1	100	80.887	ENSSDUG00000007719	cmss1	100	78.840	Seriola_dumerili
ENSMZEG00005021886	cmss1	90	75.368	ENSSLDG00000012300	cmss1	86	80.861	Seriola_lalandi_dorsalis
ENSMZEG00005021886	cmss1	100	44.330	ENSSARG00000003584	CMSS1	100	42.193	Sorex_araneus
ENSMZEG00005021886	cmss1	69	60.891	ENSSPUG00000003865	CMSS1	89	60.891	Sphenodon_punctatus
ENSMZEG00005021886	cmss1	95	77.455	ENSSPAG00000019182	cmss1	79	73.881	Stegastes_partitus
ENSMZEG00005021886	cmss1	100	51.546	ENSSSCG00000011970	CMSS1	100	49.338	Sus_scrofa
ENSMZEG00005021886	cmss1	69	62.871	ENSTGUG00000013635	CMSS1	88	62.871	Taeniopygia_guttata
ENSMZEG00005021886	cmss1	100	70.307	ENSTRUG00000015265	cmss1	100	65.552	Takifugu_rubripes
ENSMZEG00005021886	cmss1	70	72.906	ENSTNIG00000002880	cmss1	89	63.258	Tetraodon_nigroviridis
ENSMZEG00005021886	cmss1	69	43.069	ENSTBEG00000016722	CMSS1	72	43.069	Tupaia_belangeri
ENSMZEG00005021886	cmss1	100	50.515	ENSTTRG00000001562	CMSS1	100	49.485	Tursiops_truncatus
ENSMZEG00005021886	cmss1	69	61.881	ENSUAMG00000024209	CMSS1	91	61.881	Ursus_americanus
ENSMZEG00005021886	cmss1	69	61.386	ENSUMAG00000001983	CMSS1	78	61.386	Ursus_maritimus
ENSMZEG00005021886	cmss1	55	60.000	ENSVPAG00000000263	CMSS1	57	60.000	Vicugna_pacos
ENSMZEG00005021886	cmss1	69	60.891	ENSVVUG00000007776	-	80	60.891	Vulpes_vulpes
ENSMZEG00005021886	cmss1	83	56.612	ENSVVUG00000021647	-	82	61.881	Vulpes_vulpes
ENSMZEG00005021886	cmss1	100	54.296	ENSXETG00000011858	cmss1	100	51.890	Xenopus_tropicalis
ENSMZEG00005021886	cmss1	95	75.357	ENSXCOG00000018724	cmss1	91	76.981	Xiphophorus_couchianus
ENSMZEG00005021886	cmss1	91	76.296	ENSXMAG00000011243	cmss1	99	75.926	Xiphophorus_maculatus