EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005022362 (Gene tree)
Gene ID: 101473736
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 28418 bases
Position: chrAGTA05000026.1:1223429-1251846
Accession: 101473736
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005029992	XRN_N	PF03159.18	1.7e-101	1	1
ENSMZEP00005029993	XRN_N	PF03159.18	1.2e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005030936	-	2664	XM_014408471	ENSMZEP00005029992	887 (aa)	XP_014263957	-
ENSMZET00005030937	-	1620	-	ENSMZEP00005029993	539 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005022362's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03008	Ribosome biogenesis in eukaryotes	KEGG
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005022362's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005022362	xrn2	97	75.607	ENSG00000088930	XRN2	90	75.607	Homo_sapiens
ENSMZEG00005022362	xrn2	98	90.405	ENSAPOG00000009818	xrn2	89	90.405	Acanthochromis_polyacanthus
ENSMZEG00005022362	xrn2	97	75.723	ENSAMEG00000012581	XRN2	90	75.723	Ailuropoda_melanoleuca
ENSMZEG00005022362	xrn2	98	86.981	ENSACIG00000015047	xrn2	95	92.131	Amphilophus_citrinellus
ENSMZEG00005022362	xrn2	98	91.098	ENSAOCG00000023632	xrn2	89	91.098	Amphiprion_ocellaris
ENSMZEG00005022362	xrn2	98	90.983	ENSAPEG00000014871	xrn2	89	90.983	Amphiprion_percula
ENSMZEG00005022362	xrn2	98	89.747	ENSATEG00000001273	xrn2	90	89.747	Anabas_testudineus
ENSMZEG00005022362	xrn2	94	74.643	ENSAPLG00000013869	XRN2	90	74.643	Anas_platyrhynchos
ENSMZEG00005022362	xrn2	96	75.723	ENSACAG00000005565	XRN2	89	75.723	Anolis_carolinensis
ENSMZEG00005022362	xrn2	97	75.607	ENSANAG00000020126	XRN2	90	75.607	Aotus_nancymaae
ENSMZEG00005022362	xrn2	100	99.258	ENSACLG00000010522	xrn2	100	99.258	Astatotilapia_calliptera
ENSMZEG00005022362	xrn2	98	83.315	ENSAMXG00000018301	xrn2	92	83.315	Astyanax_mexicanus
ENSMZEG00005022362	xrn2	97	75.173	ENSBTAG00000011304	XRN2	90	75.173	Bos_taurus
ENSMZEG00005022362	xrn2	94	54.206	WBGene00006964	xrn-2	88	54.503	Caenorhabditis_elegans
ENSMZEG00005022362	xrn2	97	75.376	ENSCJAG00000005611	XRN2	90	75.376	Callithrix_jacchus
ENSMZEG00005022362	xrn2	97	75.607	ENSCAFG00000005185	XRN2	90	75.607	Canis_familiaris
ENSMZEG00005022362	xrn2	97	75.607	ENSCAFG00020027479	XRN2	90	75.607	Canis_lupus_dingo
ENSMZEG00005022362	xrn2	97	74.827	ENSCHIG00000006921	XRN2	90	74.827	Capra_hircus
ENSMZEG00005022362	xrn2	97	75.491	ENSTSYG00000008315	XRN2	90	75.491	Carlito_syrichta
ENSMZEG00005022362	xrn2	97	63.857	ENSCAPG00000010773	XRN2	91	62.818	Cavia_aperea
ENSMZEG00005022362	xrn2	97	76.559	ENSCPOG00000009407	XRN2	90	76.559	Cavia_porcellus
ENSMZEG00005022362	xrn2	97	75.491	ENSCATG00000040350	XRN2	91	75.491	Cercocebus_atys
ENSMZEG00005022362	xrn2	97	75.954	ENSCLAG00000013419	XRN2	90	75.954	Chinchilla_lanigera
ENSMZEG00005022362	xrn2	97	75.491	ENSCSAG00000011094	XRN2	90	75.491	Chlorocebus_sabaeus
ENSMZEG00005022362	xrn2	66	88.172	ENSCHOG00000013404	XRN2	63	88.172	Choloepus_hoffmanni
ENSMZEG00005022362	xrn2	97	75.747	ENSCPBG00000023533	XRN2	90	75.862	Chrysemys_picta_bellii
ENSMZEG00005022362	xrn2	91	63.905	ENSCING00000022336	-	100	61.065	Ciona_intestinalis
ENSMZEG00005022362	xrn2	88	69.767	ENSCSAVG00000011217	-	93	70.843	Ciona_savignyi
ENSMZEG00005022362	xrn2	97	75.491	ENSCANG00000040240	XRN2	90	75.491	Colobus_angolensis_palliatus
ENSMZEG00005022362	xrn2	97	76.328	ENSCGRG00001010676	Xrn2	92	76.443	Cricetulus_griseus_chok1gshd
ENSMZEG00005022362	xrn2	94	75.149	ENSCGRG00000006378	Xrn2	89	75.386	Cricetulus_griseus_crigri
ENSMZEG00005022362	xrn2	94	77.132	ENSCSEG00000005628	xrn2	100	79.730	Cynoglossus_semilaevis
ENSMZEG00005022362	xrn2	98	86.023	ENSCVAG00000018999	xrn2	98	91.587	Cyprinodon_variegatus
ENSMZEG00005022362	xrn2	97	83.677	ENSDARG00000101900	xrn2	96	87.189	Danio_rerio
ENSMZEG00005022362	xrn2	97	75.491	ENSDNOG00000001895	XRN2	90	75.491	Dasypus_novemcinctus
ENSMZEG00005022362	xrn2	97	74.104	ENSDORG00000005434	Xrn2	90	74.104	Dipodomys_ordii
ENSMZEG00005022362	xrn2	93	54.753	FBgn0031868	Rat1	92	53.820	Drosophila_melanogaster
ENSMZEG00005022362	xrn2	87	81.265	ENSETEG00000001740	XRN2	82	81.265	Echinops_telfairi
ENSMZEG00005022362	xrn2	99	67.450	ENSEBUG00000016136	xrn2	100	69.343	Eptatretus_burgeri
ENSMZEG00005022362	xrn2	97	76.218	ENSEASG00005002484	XRN2	90	76.218	Equus_asinus_asinus
ENSMZEG00005022362	xrn2	91	92.308	ENSECAG00000018988	XRN2	86	92.308	Equus_caballus
ENSMZEG00005022362	xrn2	73	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSMZEG00005022362	xrn2	98	83.541	ENSELUG00000000552	xrn2	90	83.541	Esox_lucius
ENSMZEG00005022362	xrn2	97	75.491	ENSFCAG00000007970	XRN2	90	75.491	Felis_catus
ENSMZEG00005022362	xrn2	97	75.116	ENSFALG00000004508	XRN2	90	75.116	Ficedula_albicollis
ENSMZEG00005022362	xrn2	97	75.607	ENSFDAG00000016311	XRN2	90	75.607	Fukomys_damarensis
ENSMZEG00005022362	xrn2	94	82.592	ENSFHEG00000013039	xrn2	98	82.950	Fundulus_heteroclitus
ENSMZEG00005022362	xrn2	93	80.241	ENSGMOG00000013436	xrn2	100	80.241	Gadus_morhua
ENSMZEG00005022362	xrn2	97	74.537	ENSGALG00000008372	XRN2	90	74.537	Gallus_gallus
ENSMZEG00005022362	xrn2	98	87.729	ENSGAFG00000014284	xrn2	99	87.729	Gambusia_affinis
ENSMZEG00005022362	xrn2	94	84.526	ENSGACG00000011870	xrn2	96	87.645	Gasterosteus_aculeatus
ENSMZEG00005022362	xrn2	97	75.922	ENSGAGG00000004884	XRN2	90	75.747	Gopherus_agassizii
ENSMZEG00005022362	xrn2	97	75.491	ENSGGOG00000013738	XRN2	90	75.491	Gorilla_gorilla
ENSMZEG00005022362	xrn2	100	99.072	ENSHBUG00000005077	xrn2	100	99.072	Haplochromis_burtoni
ENSMZEG00005022362	xrn2	97	75.058	ENSHGLG00000014831	XRN2	90	75.058	Heterocephalus_glaber_female
ENSMZEG00005022362	xrn2	97	75.058	ENSHGLG00100013130	XRN2	90	75.058	Heterocephalus_glaber_male
ENSMZEG00005022362	xrn2	98	86.044	ENSHCOG00000011994	xrn2	96	82.366	Hippocampus_comes
ENSMZEG00005022362	xrn2	96	82.474	ENSIPUG00000006639	xrn2	90	82.474	Ictalurus_punctatus
ENSMZEG00005022362	xrn2	97	75.607	ENSSTOG00000000589	XRN2	90	75.607	Ictidomys_tridecemlineatus
ENSMZEG00005022362	xrn2	97	76.416	ENSJJAG00000022128	Xrn2	90	76.416	Jaculus_jaculus
ENSMZEG00005022362	xrn2	94	85.300	ENSLBEG00000010041	xrn2	100	88.610	Labrus_bergylta
ENSMZEG00005022362	xrn2	93	76.831	ENSLACG00000008307	XRN2	98	77.027	Latimeria_chalumnae
ENSMZEG00005022362	xrn2	96	78.471	ENSLOCG00000016874	xrn2	93	80.856	Lepisosteus_oculatus
ENSMZEG00005022362	xrn2	97	75.751	ENSLAFG00000014624	XRN2	90	75.751	Loxodonta_africana
ENSMZEG00005022362	xrn2	97	75.491	ENSMFAG00000038122	XRN2	90	75.491	Macaca_fascicularis
ENSMZEG00005022362	xrn2	97	75.491	ENSMMUG00000011405	XRN2	90	75.491	Macaca_mulatta
ENSMZEG00005022362	xrn2	97	75.376	ENSMNEG00000040626	XRN2	90	75.376	Macaca_nemestrina
ENSMZEG00005022362	xrn2	97	75.376	ENSMLEG00000041897	XRN2	90	75.376	Mandrillus_leucophaeus
ENSMZEG00005022362	xrn2	98	90.092	ENSMAMG00000008633	xrn2	90	90.092	Mastacembelus_armatus
ENSMZEG00005022362	xrn2	97	74.078	ENSMGAG00000003196	XRN2	90	74.078	Meleagris_gallopavo
ENSMZEG00005022362	xrn2	97	76.443	ENSMAUG00000021842	Xrn2	90	76.328	Mesocricetus_auratus
ENSMZEG00005022362	xrn2	97	75.723	ENSMICG00000008126	XRN2	90	75.723	Microcebus_murinus
ENSMZEG00005022362	xrn2	97	75.607	ENSMOCG00000012588	Xrn2	90	75.607	Microtus_ochrogaster
ENSMZEG00005022362	xrn2	98	87.075	ENSMMOG00000017576	xrn2	98	86.952	Mola_mola
ENSMZEG00005022362	xrn2	98	74.886	ENSMODG00000006163	XRN2	91	74.886	Monodelphis_domestica
ENSMZEG00005022362	xrn2	98	87.472	ENSMALG00000011355	xrn2	95	91.363	Monopterus_albus
ENSMZEG00005022362	xrn2	97	75.838	MGP_CAROLIEiJ_G0024400	Xrn2	90	75.838	Mus_caroli
ENSMZEG00005022362	xrn2	97	75.982	ENSMUSG00000027433	Xrn2	90	75.982	Mus_musculus
ENSMZEG00005022362	xrn2	97	75.866	MGP_PahariEiJ_G0025843	Xrn2	90	75.866	Mus_pahari
ENSMZEG00005022362	xrn2	97	75.982	MGP_SPRETEiJ_G0025318	Xrn2	94	88.119	Mus_spretus
ENSMZEG00005022362	xrn2	97	74.150	ENSMPUG00000001198	XRN2	84	74.150	Mustela_putorius_furo
ENSMZEG00005022362	xrn2	97	75.810	ENSMLUG00000001536	XRN2	90	75.810	Myotis_lucifugus
ENSMZEG00005022362	xrn2	97	76.559	ENSNGAG00000018138	Xrn2	90	76.559	Nannospalax_galili
ENSMZEG00005022362	xrn2	100	99.098	ENSNBRG00000008062	xrn2	100	99.098	Neolamprologus_brichardi
ENSMZEG00005022362	xrn2	97	75.607	ENSNLEG00000009991	XRN2	90	75.607	Nomascus_leucogenys
ENSMZEG00005022362	xrn2	56	93.333	ENSMEUG00000008622	-	53	93.333	Notamacropus_eugenii
ENSMZEG00005022362	xrn2	66	72.105	ENSOPRG00000001397	-	63	72.105	Ochotona_princeps
ENSMZEG00005022362	xrn2	95	69.905	ENSODEG00000000860	-	91	69.550	Octodon_degus
ENSMZEG00005022362	xrn2	97	75.607	ENSODEG00000010745	-	90	75.607	Octodon_degus
ENSMZEG00005022362	xrn2	98	97.341	ENSONIG00000018720	xrn2	91	93.970	Oreochromis_niloticus
ENSMZEG00005022362	xrn2	97	75.491	ENSOANG00000015673	XRN2	90	75.491	Ornithorhynchus_anatinus
ENSMZEG00005022362	xrn2	97	76.069	ENSOCUG00000013468	XRN2	90	76.069	Oryctolagus_cuniculus
ENSMZEG00005022362	xrn2	98	88.134	ENSORLG00000017213	xrn2	98	87.657	Oryzias_latipes
ENSMZEG00005022362	xrn2	98	88.134	ENSORLG00020001824	xrn2	90	88.134	Oryzias_latipes_hni
ENSMZEG00005022362	xrn2	98	87.673	ENSORLG00015019747	xrn2	90	87.673	Oryzias_latipes_hsok
ENSMZEG00005022362	xrn2	98	87.558	ENSOMEG00000019820	xrn2	89	87.558	Oryzias_melastigma
ENSMZEG00005022362	xrn2	97	75.723	ENSOGAG00000001068	XRN2	90	75.838	Otolemur_garnettii
ENSMZEG00005022362	xrn2	94	74.286	ENSOARG00000004443	XRN2	90	74.286	Ovis_aries
ENSMZEG00005022362	xrn2	97	75.491	ENSPPAG00000033549	XRN2	90	75.491	Pan_paniscus
ENSMZEG00005022362	xrn2	97	75.491	ENSPPRG00000008732	XRN2	90	75.491	Panthera_pardus
ENSMZEG00005022362	xrn2	94	74.970	ENSPTIG00000015683	XRN2	87	74.970	Panthera_tigris_altaica
ENSMZEG00005022362	xrn2	97	75.491	ENSPTRG00000013308	XRN2	90	75.491	Pan_troglodytes
ENSMZEG00005022362	xrn2	97	75.491	ENSPANG00000018088	XRN2	90	75.491	Papio_anubis
ENSMZEG00005022362	xrn2	97	81.366	ENSPKIG00000016889	xrn2	89	81.366	Paramormyrops_kingsleyae
ENSMZEG00005022362	xrn2	87	76.607	ENSPSIG00000014666	XRN2	100	76.607	Pelodiscus_sinensis
ENSMZEG00005022362	xrn2	97	75.982	ENSPEMG00000000111	Xrn2	90	75.982	Peromyscus_maniculatus_bairdii
ENSMZEG00005022362	xrn2	59	67.847	ENSPMAG00000002576	xrn2	99	72.861	Petromyzon_marinus
ENSMZEG00005022362	xrn2	98	87.227	ENSPFOG00000004182	xrn2	90	87.227	Poecilia_formosa
ENSMZEG00005022362	xrn2	98	87.385	ENSPLAG00000007351	xrn2	98	87.385	Poecilia_latipinna
ENSMZEG00005022362	xrn2	91	86.748	ENSPMEG00000011798	xrn2	89	86.748	Poecilia_mexicana
ENSMZEG00005022362	xrn2	98	87.212	ENSPREG00000012452	xrn2	97	87.212	Poecilia_reticulata
ENSMZEG00005022362	xrn2	97	75.260	ENSPPYG00000010755	XRN2	90	75.260	Pongo_abelii
ENSMZEG00005022362	xrn2	97	71.313	ENSPCAG00000011191	XRN2	90	71.313	Procavia_capensis
ENSMZEG00005022362	xrn2	97	69.017	ENSPCOG00000016468	XRN2	89	69.017	Propithecus_coquereli
ENSMZEG00005022362	xrn2	89	66.667	ENSPVAG00000004596	XRN2	83	66.667	Pteropus_vampyrus
ENSMZEG00005022362	xrn2	100	97.632	ENSPNYG00000001765	xrn2	100	97.632	Pundamilia_nyererei
ENSMZEG00005022362	xrn2	98	81.348	ENSPNAG00000010956	xrn2	91	81.348	Pygocentrus_nattereri
ENSMZEG00005022362	xrn2	97	76.559	ENSRNOG00000011785	Xrn2	90	76.559	Rattus_norvegicus
ENSMZEG00005022362	xrn2	93	77.295	ENSRBIG00000036193	XRN2	100	77.295	Rhinopithecus_bieti
ENSMZEG00005022362	xrn2	97	75.491	ENSRROG00000044400	XRN2	81	75.491	Rhinopithecus_roxellana
ENSMZEG00005022362	xrn2	80	50.109	YOR048C	RAT1	59	54.348	Saccharomyces_cerevisiae
ENSMZEG00005022362	xrn2	97	75.607	ENSSBOG00000021014	XRN2	90	75.607	Saimiri_boliviensis_boliviensis
ENSMZEG00005022362	xrn2	97	83.643	ENSSFOG00015001091	xrn2	90	83.643	Scleropages_formosus
ENSMZEG00005022362	xrn2	98	88.799	ENSSMAG00000007834	xrn2	88	88.799	Scophthalmus_maximus
ENSMZEG00005022362	xrn2	98	87.415	ENSSDUG00000012802	xrn2	100	87.415	Seriola_dumerili
ENSMZEG00005022362	xrn2	98	90.207	ENSSLDG00000021273	xrn2	98	90.207	Seriola_lalandi_dorsalis
ENSMZEG00005022362	xrn2	68	96.000	ENSSARG00000005859	-	62	96.000	Sorex_araneus
ENSMZEG00005022362	xrn2	97	73.678	ENSSPUG00000005485	XRN2	89	73.678	Sphenodon_punctatus
ENSMZEG00005022362	xrn2	98	90.983	ENSSPAG00000016027	xrn2	89	90.983	Stegastes_partitus
ENSMZEG00005022362	xrn2	97	74.104	ENSSSCG00000007109	XRN2	90	74.104	Sus_scrofa
ENSMZEG00005022362	xrn2	97	73.848	ENSTGUG00000007535	XRN2	90	73.848	Taeniopygia_guttata
ENSMZEG00005022362	xrn2	98	86.997	ENSTRUG00000015489	xrn2	88	86.997	Takifugu_rubripes
ENSMZEG00005022362	xrn2	98	85.878	ENSTNIG00000010712	xrn2	90	85.878	Tetraodon_nigroviridis
ENSMZEG00005022362	xrn2	97	75.607	ENSTBEG00000004119	XRN2	90	75.607	Tupaia_belangeri
ENSMZEG00005022362	xrn2	90	78.407	ENSTTRG00000009087	XRN2	83	78.407	Tursiops_truncatus
ENSMZEG00005022362	xrn2	97	75.838	ENSUAMG00000024634	XRN2	93	74.335	Ursus_americanus
ENSMZEG00005022362	xrn2	94	75.089	ENSUMAG00000004012	XRN2	85	75.089	Ursus_maritimus
ENSMZEG00005022362	xrn2	85	69.921	ENSVPAG00000010694	XRN2	81	68.997	Vicugna_pacos
ENSMZEG00005022362	xrn2	97	75.607	ENSVVUG00000012178	XRN2	90	75.607	Vulpes_vulpes
ENSMZEG00005022362	xrn2	98	76.538	ENSXETG00000023501	xrn2	90	77.986	Xenopus_tropicalis
ENSMZEG00005022362	xrn2	98	87.572	ENSXMAG00000000242	xrn2	92	88.808	Xiphophorus_maculatus