EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005023713 (Gene tree)
Gene ID: 101469158
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 13792 bases
Position: chrLG20:16845752-16859543
Accession: 101469158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005031797	PABP	PF00658.18	2.4e-29	1	1
ENSMZEP00005031794	PABP	PF00658.18	2.5e-29	1	1
ENSMZEP00005031797	RRM_5	PF13893.6	9.6e-09	1	2
ENSMZEP00005031797	RRM_5	PF13893.6	9.6e-09	2	2
ENSMZEP00005031794	RRM_5	PF13893.6	1.4e-08	1	2
ENSMZEP00005031794	RRM_5	PF13893.6	1.4e-08	2	2
ENSMZEP00005031794	RRM_1	PF00076.22	1.4e-88	1	4
ENSMZEP00005031794	RRM_1	PF00076.22	1.4e-88	2	4
ENSMZEP00005031794	RRM_1	PF00076.22	1.4e-88	3	4
ENSMZEP00005031794	RRM_1	PF00076.22	1.4e-88	4	4
ENSMZEP00005031797	RRM_1	PF00076.22	1.6e-88	1	4
ENSMZEP00005031797	RRM_1	PF00076.22	1.6e-88	2	4
ENSMZEP00005031797	RRM_1	PF00076.22	1.6e-88	3	4
ENSMZEP00005031797	RRM_1	PF00076.22	1.6e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005032830	-	2141	XM_023154891	ENSMZEP00005031797	626 (aa)	XP_023010659	UPI000C24BF4E
ENSMZET00005032827	-	2240	XM_004546066	ENSMZEP00005031794	659 (aa)	XP_004546123	UPI0003298891

Gene Model

Click here to download ENSMZEG00005023713's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03013	RNA transport	KEGG
mze03015	mRNA surveillance pathway	KEGG
mze03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005023713's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005023713	pabpc1l	99	67.512	ENSG00000101104	PABPC1L	98	76.235	Homo_sapiens
ENSMZEG00005023713	pabpc1l	99	84.084	ENSAPOG00000010842	pabpc1l	99	84.084	Acanthochromis_polyacanthus
ENSMZEG00005023713	pabpc1l	99	62.901	ENSAMEG00000004099	PABPC1L	100	63.344	Ailuropoda_melanoleuca
ENSMZEG00005023713	pabpc1l	100	93.620	ENSACIG00000021004	-	100	94.076	Amphilophus_citrinellus
ENSMZEG00005023713	pabpc1l	100	87.220	ENSAOCG00000006167	-	100	87.220	Amphiprion_ocellaris
ENSMZEG00005023713	pabpc1l	100	85.783	ENSAPEG00000010558	-	100	89.423	Amphiprion_percula
ENSMZEG00005023713	pabpc1l	100	87.917	ENSATEG00000007428	pabpc1l	100	88.553	Anabas_testudineus
ENSMZEG00005023713	pabpc1l	98	71.840	ENSAPLG00000008415	PABPC1L	99	71.791	Anas_platyrhynchos
ENSMZEG00005023713	pabpc1l	99	74.250	ENSACAG00000011841	PABPC1L	99	74.250	Anolis_carolinensis
ENSMZEG00005023713	pabpc1l	99	67.732	ENSANAG00000026826	PABPC1L	99	67.732	Aotus_nancymaae
ENSMZEG00005023713	pabpc1l	100	100.000	ENSACLG00000024791	pabpc1l	100	100.000	Astatotilapia_calliptera
ENSMZEG00005023713	pabpc1l	100	80.604	ENSAMXG00000013552	pabpc1l	100	80.604	Astyanax_mexicanus
ENSMZEG00005023713	pabpc1l	66	61.246	ENSBTAG00000016849	PABPC1L	89	60.884	Bos_taurus
ENSMZEG00005023713	pabpc1l	64	86.905	ENSBTAG00000055300	-	100	86.905	Bos_taurus
ENSMZEG00005023713	pabpc1l	99	67.891	ENSCJAG00000017628	PABPC1L	99	67.891	Callithrix_jacchus
ENSMZEG00005023713	pabpc1l	58	81.034	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSMZEG00005023713	pabpc1l	99	63.679	ENSCAFG00000009573	PABPC1L	100	63.679	Canis_familiaris
ENSMZEG00005023713	pabpc1l	99	67.250	ENSCAFG00020013828	PABPC1L	99	67.250	Canis_lupus_dingo
ENSMZEG00005023713	pabpc1l	98	66.721	ENSCHIG00000025759	PABPC1L	91	66.343	Capra_hircus
ENSMZEG00005023713	pabpc1l	99	66.773	ENSTSYG00000006645	PABPC1L	99	66.773	Carlito_syrichta
ENSMZEG00005023713	pabpc1l	98	61.400	ENSCAPG00000014519	PABPC1L	99	61.400	Cavia_aperea
ENSMZEG00005023713	pabpc1l	99	63.911	ENSCPOG00000013633	PABPC1L	99	63.911	Cavia_porcellus
ENSMZEG00005023713	pabpc1l	99	67.252	ENSCCAG00000023338	PABPC1L	99	67.732	Cebus_capucinus
ENSMZEG00005023713	pabpc1l	99	68.051	ENSCATG00000034065	PABPC1L	99	68.051	Cercocebus_atys
ENSMZEG00005023713	pabpc1l	99	63.376	ENSCLAG00000005298	PABPC1L	99	63.854	Chinchilla_lanigera
ENSMZEG00005023713	pabpc1l	99	67.891	ENSCSAG00000014242	PABPC1L	99	67.891	Chlorocebus_sabaeus
ENSMZEG00005023713	pabpc1l	55	85.496	ENSCPBG00000007810	-	91	90.756	Chrysemys_picta_bellii
ENSMZEG00005023713	pabpc1l	70	79.864	ENSCPBG00000017755	-	99	79.864	Chrysemys_picta_bellii
ENSMZEG00005023713	pabpc1l	75	61.864	ENSCING00000002796	-	97	50.198	Ciona_intestinalis
ENSMZEG00005023713	pabpc1l	99	57.585	ENSCSAVG00000003102	-	100	85.714	Ciona_savignyi
ENSMZEG00005023713	pabpc1l	99	60.480	ENSCSAVG00000004246	-	89	71.523	Ciona_savignyi
ENSMZEG00005023713	pabpc1l	99	66.026	ENSCANG00000037530	PABPC1L	99	66.026	Colobus_angolensis_palliatus
ENSMZEG00005023713	pabpc1l	99	59.591	ENSCGRG00001021938	Pabpc1l	99	59.591	Cricetulus_griseus_chok1gshd
ENSMZEG00005023713	pabpc1l	99	59.591	ENSCGRG00000007946	Pabpc1l	99	59.591	Cricetulus_griseus_crigri
ENSMZEG00005023713	pabpc1l	99	75.481	ENSCSEG00000021295	pabpc1l	99	75.481	Cynoglossus_semilaevis
ENSMZEG00005023713	pabpc1l	100	87.420	ENSCVAG00000015943	-	99	96.947	Cyprinodon_variegatus
ENSMZEG00005023713	pabpc1l	99	78.947	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSMZEG00005023713	pabpc1l	99	67.943	ENSDNOG00000048450	PABPC1L	99	67.943	Dasypus_novemcinctus
ENSMZEG00005023713	pabpc1l	99	65.120	ENSDORG00000001067	Pabpc1l	99	65.120	Dipodomys_ordii
ENSMZEG00005023713	pabpc1l	95	76.016	ENSETEG00000009969	PABPC1L	72	76.016	Echinops_telfairi
ENSMZEG00005023713	pabpc1l	64	84.524	ENSEASG00005023408	-	100	84.524	Equus_asinus_asinus
ENSMZEG00005023713	pabpc1l	50	74.684	ENSEASG00005023407	-	64	74.684	Equus_asinus_asinus
ENSMZEG00005023713	pabpc1l	66	68.000	ENSECAG00000040139	-	81	68.000	Equus_caballus
ENSMZEG00005023713	pabpc1l	99	65.974	ENSEEUG00000005978	PABPC1L	99	65.974	Erinaceus_europaeus
ENSMZEG00005023713	pabpc1l	100	80.604	ENSELUG00000001811	pabpc1l	100	80.604	Esox_lucius
ENSMZEG00005023713	pabpc1l	99	68.000	ENSFCAG00000011692	PABPC1L	99	68.000	Felis_catus
ENSMZEG00005023713	pabpc1l	86	72.007	ENSFALG00000005372	PABPC1L	98	68.151	Ficedula_albicollis
ENSMZEG00005023713	pabpc1l	99	63.200	ENSFDAG00000008291	PABPC1L	99	63.200	Fukomys_damarensis
ENSMZEG00005023713	pabpc1l	100	89.137	ENSFHEG00000003398	pabpc1l	100	89.137	Fundulus_heteroclitus
ENSMZEG00005023713	pabpc1l	99	82.588	ENSGMOG00000004437	pabpc1l	99	82.588	Gadus_morhua
ENSMZEG00005023713	pabpc1l	88	74.830	ENSGALG00000004123	PABPC1L	99	80.048	Gallus_gallus
ENSMZEG00005023713	pabpc1l	100	87.102	ENSGAFG00000021057	pabpc1l	100	87.102	Gambusia_affinis
ENSMZEG00005023713	pabpc1l	99	87.061	ENSGACG00000002792	pabpc1l	100	87.061	Gasterosteus_aculeatus
ENSMZEG00005023713	pabpc1l	99	73.492	ENSGAGG00000000589	PABPC1L	98	73.492	Gopherus_agassizii
ENSMZEG00005023713	pabpc1l	99	67.512	ENSGGOG00000004584	PABPC1L	99	67.512	Gorilla_gorilla
ENSMZEG00005023713	pabpc1l	100	99.521	ENSHBUG00000006134	pabpc1l	100	99.521	Haplochromis_burtoni
ENSMZEG00005023713	pabpc1l	100	64.455	ENSHGLG00000008434	PABPC1L	99	64.771	Heterocephalus_glaber_female
ENSMZEG00005023713	pabpc1l	58	87.079	ENSHGLG00100019506	-	100	87.500	Heterocephalus_glaber_male
ENSMZEG00005023713	pabpc1l	100	64.455	ENSHGLG00100012151	PABPC1L	99	64.771	Heterocephalus_glaber_male
ENSMZEG00005023713	pabpc1l	99	87.188	ENSHCOG00000009270	pabpc1l	100	87.188	Hippocampus_comes
ENSMZEG00005023713	pabpc1l	100	79.173	ENSIPUG00000012602	pabpc1l	100	79.173	Ictalurus_punctatus
ENSMZEG00005023713	pabpc1l	58	62.011	ENSIPUG00000006760	-	90	62.011	Ictalurus_punctatus
ENSMZEG00005023713	pabpc1l	58	62.011	ENSIPUG00000006780	-	87	62.011	Ictalurus_punctatus
ENSMZEG00005023713	pabpc1l	99	66.773	ENSSTOG00000003739	PABPC1L	99	66.773	Ictidomys_tridecemlineatus
ENSMZEG00005023713	pabpc1l	99	51.957	ENSJJAG00000022406	Pabpc1l	99	50.637	Jaculus_jaculus
ENSMZEG00005023713	pabpc1l	100	87.700	ENSKMAG00000016847	pabpc1l	100	87.700	Kryptolebias_marmoratus
ENSMZEG00005023713	pabpc1l	100	89.617	ENSLBEG00000010084	pabpc1l	100	89.617	Labrus_bergylta
ENSMZEG00005023713	pabpc1l	99	72.370	ENSLACG00000005762	PABPC1L	99	73.309	Latimeria_chalumnae
ENSMZEG00005023713	pabpc1l	99	80.190	ENSLOCG00000007519	pabpc1l	99	80.190	Lepisosteus_oculatus
ENSMZEG00005023713	pabpc1l	99	66.772	ENSLAFG00000003553	PABPC1L	100	66.772	Loxodonta_africana
ENSMZEG00005023713	pabpc1l	99	68.371	ENSMFAG00000040365	PABPC1L	99	68.371	Macaca_fascicularis
ENSMZEG00005023713	pabpc1l	99	67.572	ENSMNEG00000032298	PABPC1L	99	67.572	Macaca_nemestrina
ENSMZEG00005023713	pabpc1l	99	68.051	ENSMLEG00000043139	PABPC1L	99	68.051	Mandrillus_leucophaeus
ENSMZEG00005023713	pabpc1l	97	89.951	ENSMAMG00000011854	pabpc1l	97	89.951	Mastacembelus_armatus
ENSMZEG00005023713	pabpc1l	99	72.496	ENSMGAG00000003674	PABPC1L	99	72.496	Meleagris_gallopavo
ENSMZEG00005023713	pabpc1l	99	58.610	ENSMOCG00000013186	Pabpc1l	99	58.610	Microtus_ochrogaster
ENSMZEG00005023713	pabpc1l	99	87.680	ENSMMOG00000020574	-	99	87.680	Mola_mola
ENSMZEG00005023713	pabpc1l	97	69.756	ENSMODG00000016198	PABPC1L	99	69.756	Monodelphis_domestica
ENSMZEG00005023713	pabpc1l	99	87.557	ENSMALG00000021622	pabpc1l	100	89.292	Monopterus_albus
ENSMZEG00005023713	pabpc1l	99	59.588	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	59.588	Mus_caroli
ENSMZEG00005023713	pabpc1l	99	60.287	ENSMUSG00000054582	Pabpc1l	99	60.350	Mus_musculus
ENSMZEG00005023713	pabpc1l	100	59.019	MGP_PahariEiJ_G0026071	Pabpc1l	100	59.084	Mus_pahari
ENSMZEG00005023713	pabpc1l	99	59.524	MGP_SPRETEiJ_G0025549	Pabpc1l	99	59.588	Mus_spretus
ENSMZEG00005023713	pabpc1l	99	68.320	ENSMPUG00000017646	PABPC1L	99	68.320	Mustela_putorius_furo
ENSMZEG00005023713	pabpc1l	98	64.818	ENSMLUG00000006324	PABPC1L	98	64.818	Myotis_lucifugus
ENSMZEG00005023713	pabpc1l	99	61.551	ENSNGAG00000010458	Pabpc1l	99	61.551	Nannospalax_galili
ENSMZEG00005023713	pabpc1l	100	98.403	ENSNBRG00000016633	pabpc1l	100	98.403	Neolamprologus_brichardi
ENSMZEG00005023713	pabpc1l	90	64.362	ENSMEUG00000007905	-	89	64.362	Notamacropus_eugenii
ENSMZEG00005023713	pabpc1l	99	67.093	ENSOPRG00000011846	PABPC1L	99	67.093	Ochotona_princeps
ENSMZEG00005023713	pabpc1l	99	59.325	ENSODEG00000015482	PABPC1L	99	59.325	Octodon_degus
ENSMZEG00005023713	pabpc1l	59	81.250	ENSODEG00000002920	-	97	81.250	Octodon_degus
ENSMZEG00005023713	pabpc1l	100	98.722	ENSONIG00000017314	pabpc1l	100	98.722	Oreochromis_niloticus
ENSMZEG00005023713	pabpc1l	90	61.579	ENSOANG00000015793	-	100	61.579	Ornithorhynchus_anatinus
ENSMZEG00005023713	pabpc1l	99	63.706	ENSOCUG00000003005	PABPC1L	99	64.165	Oryctolagus_cuniculus
ENSMZEG00005023713	pabpc1l	100	86.741	ENSORLG00000010322	pabpc1l	100	89.720	Oryzias_latipes
ENSMZEG00005023713	pabpc1l	100	86.581	ENSORLG00020021193	pabpc1l	100	89.720	Oryzias_latipes_hni
ENSMZEG00005023713	pabpc1l	100	86.581	ENSORLG00015017018	pabpc1l	100	89.720	Oryzias_latipes_hsok
ENSMZEG00005023713	pabpc1l	100	86.191	ENSOMEG00000010789	pabpc1l	100	86.191	Oryzias_melastigma
ENSMZEG00005023713	pabpc1l	99	66.773	ENSOGAG00000032999	PABPC1L	99	66.773	Otolemur_garnettii
ENSMZEG00005023713	pabpc1l	99	67.252	ENSOARG00000004578	PABPC1L	99	67.252	Ovis_aries
ENSMZEG00005023713	pabpc1l	99	67.670	ENSPPAG00000039677	PABPC1L	99	67.670	Pan_paniscus
ENSMZEG00005023713	pabpc1l	61	67.284	ENSPPRG00000019327	-	98	67.593	Panthera_pardus
ENSMZEG00005023713	pabpc1l	98	67.851	ENSPTIG00000006524	PABPC1L	99	67.851	Panthera_tigris_altaica
ENSMZEG00005023713	pabpc1l	62	76.543	ENSPTRG00000013531	PABPC1L	98	76.543	Pan_troglodytes
ENSMZEG00005023713	pabpc1l	99	68.051	ENSPANG00000018788	PABPC1L	99	68.051	Papio_anubis
ENSMZEG00005023713	pabpc1l	100	79.048	ENSPKIG00000007322	pabpc1l	100	79.048	Paramormyrops_kingsleyae
ENSMZEG00005023713	pabpc1l	55	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSMZEG00005023713	pabpc1l	66	81.295	ENSPSIG00000013289	PABPC1L	99	81.295	Pelodiscus_sinensis
ENSMZEG00005023713	pabpc1l	62	96.212	ENSPMGG00000023117	pabpc1l	97	94.419	Periophthalmus_magnuspinnatus
ENSMZEG00005023713	pabpc1l	69	86.154	ENSPMGG00000023121	-	91	86.154	Periophthalmus_magnuspinnatus
ENSMZEG00005023713	pabpc1l	99	58.360	ENSPEMG00000020671	Pabpc1l	99	58.991	Peromyscus_maniculatus_bairdii
ENSMZEG00005023713	pabpc1l	100	88.818	ENSPFOG00000013241	pabpc1l	100	88.818	Poecilia_formosa
ENSMZEG00005023713	pabpc1l	100	88.658	ENSPLAG00000017490	-	100	88.658	Poecilia_latipinna
ENSMZEG00005023713	pabpc1l	52	98.462	ENSPLAG00000023686	-	92	98.462	Poecilia_latipinna
ENSMZEG00005023713	pabpc1l	100	88.818	ENSPMEG00000007677	pabpc1l	100	88.818	Poecilia_mexicana
ENSMZEG00005023713	pabpc1l	62	98.462	ENSPMEG00000009185	-	88	98.462	Poecilia_mexicana
ENSMZEG00005023713	pabpc1l	66	95.134	ENSPREG00000015886	pabpc1l	99	95.134	Poecilia_reticulata
ENSMZEG00005023713	pabpc1l	99	68.051	ENSPPYG00000011042	PABPC1L	99	68.051	Pongo_abelii
ENSMZEG00005023713	pabpc1l	60	84.375	ENSPCAG00000011787	-	75	84.375	Procavia_capensis
ENSMZEG00005023713	pabpc1l	99	68.211	ENSPCOG00000020630	PABPC1L	99	68.211	Propithecus_coquereli
ENSMZEG00005023713	pabpc1l	99	65.920	ENSPVAG00000012663	PABPC1L	99	65.920	Pteropus_vampyrus
ENSMZEG00005023713	pabpc1l	99	96.288	ENSPNYG00000004101	pabpc1l	100	96.288	Pundamilia_nyererei
ENSMZEG00005023713	pabpc1l	100	72.814	ENSPNAG00000021248	pabpc1l	100	72.814	Pygocentrus_nattereri
ENSMZEG00005023713	pabpc1l	99	58.685	ENSRNOG00000012750	Pabpc1l	99	59.716	Rattus_norvegicus
ENSMZEG00005023713	pabpc1l	99	67.891	ENSRBIG00000035381	PABPC1L	99	67.891	Rhinopithecus_bieti
ENSMZEG00005023713	pabpc1l	99	67.732	ENSRROG00000044498	PABPC1L	99	67.732	Rhinopithecus_roxellana
ENSMZEG00005023713	pabpc1l	99	67.732	ENSSBOG00000009532	-	99	67.732	Saimiri_boliviensis_boliviensis
ENSMZEG00005023713	pabpc1l	98	64.444	ENSSHAG00000011446	PABPC1L	100	64.444	Sarcophilus_harrisii
ENSMZEG00005023713	pabpc1l	100	79.206	ENSSFOG00015017304	pabpc1l	100	79.206	Scleropages_formosus
ENSMZEG00005023713	pabpc1l	100	88.179	ENSSMAG00000010516	pabpc1l	98	98.450	Scophthalmus_maximus
ENSMZEG00005023713	pabpc1l	100	90.415	ENSSDUG00000014743	pabpc1l	100	90.415	Seriola_dumerili
ENSMZEG00005023713	pabpc1l	97	88.284	ENSSLDG00000006981	pabpc1l	98	93.151	Seriola_lalandi_dorsalis
ENSMZEG00005023713	pabpc1l	99	72.512	ENSSPUG00000004233	PABPC1L	99	72.512	Sphenodon_punctatus
ENSMZEG00005023713	pabpc1l	100	76.198	ENSSPAG00000017137	pabpc1l	100	76.198	Stegastes_partitus
ENSMZEG00005023713	pabpc1l	99	68.421	ENSSSCG00000007382	PABPC1L	99	68.421	Sus_scrofa
ENSMZEG00005023713	pabpc1l	99	71.787	ENSTGUG00000005114	PABPC1L	99	71.787	Taeniopygia_guttata
ENSMZEG00005023713	pabpc1l	97	87.315	ENSTRUG00000011085	pabpc1l	97	87.315	Takifugu_rubripes
ENSMZEG00005023713	pabpc1l	99	85.048	ENSTNIG00000017903	pabpc1l	98	85.048	Tetraodon_nigroviridis
ENSMZEG00005023713	pabpc1l	94	77.055	ENSTBEG00000002851	PABPC1L	79	77.055	Tupaia_belangeri
ENSMZEG00005023713	pabpc1l	94	65.320	ENSTTRG00000007618	PABPC1L	100	65.738	Tursiops_truncatus
ENSMZEG00005023713	pabpc1l	99	65.650	ENSUAMG00000017682	PABPC1L	99	65.650	Ursus_americanus
ENSMZEG00005023713	pabpc1l	65	73.538	ENSUMAG00000025436	PABPC1L	92	73.538	Ursus_maritimus
ENSMZEG00005023713	pabpc1l	98	75.494	ENSVVUG00000018939	PABPC1L	98	75.494	Vulpes_vulpes
ENSMZEG00005023713	pabpc1l	99	70.411	ENSXETG00000022831	pabpc1l	99	70.411	Xenopus_tropicalis
ENSMZEG00005023713	pabpc1l	100	87.380	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSMZEG00005023713	pabpc1l	100	88.339	ENSXMAG00000017135	pabpc1l	100	88.339	Xiphophorus_maculatus