EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005024249 (Gene tree)
Gene ID: 101471686
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 10541 bases
Position: chrLG18:6389089-6399629
Accession: 101471686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005032555	RRM_1	PF00076.22	8.1e-13	1	1
ENSMZEP00005032553	RRM_1	PF00076.22	8.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005033608	-	1941	XM_004555213	ENSMZEP00005032553	319 (aa)	XP_004555270	UPI0006459A1D
ENSMZET00005033610	-	945	-	ENSMZEP00005032555	314 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005024249's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005024249's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005024249	-	85	49.638	ENSG00000184672	RALYL	92	78.205	Homo_sapiens
ENSMZEG00005024249	-	80	86.166	ENSAPOG00000006963	hnrnpc	85	80.075	Acanthochromis_polyacanthus
ENSMZEG00005024249	-	81	82.879	ENSACIG00000000270	-	99	74.920	Amphilophus_citrinellus
ENSMZEG00005024249	-	97	95.793	ENSACIG00000016568	-	100	95.793	Amphilophus_citrinellus
ENSMZEG00005024249	-	80	86.561	ENSAOCG00000003896	-	85	80.451	Amphiprion_ocellaris
ENSMZEG00005024249	-	100	89.815	ENSAOCG00000021616	-	100	89.506	Amphiprion_ocellaris
ENSMZEG00005024249	-	84	93.258	ENSAPEG00000019962	-	85	92.884	Amphiprion_percula
ENSMZEG00005024249	-	80	86.561	ENSAPEG00000001489	-	85	80.451	Amphiprion_percula
ENSMZEG00005024249	-	81	82.812	ENSATEG00000011734	-	99	75.484	Anabas_testudineus
ENSMZEG00005024249	-	84	92.565	ENSATEG00000018006	-	100	88.344	Anabas_testudineus
ENSMZEG00005024249	-	86	46.102	ENSAPLG00000015574	RALYL	82	52.697	Anas_platyrhynchos
ENSMZEG00005024249	-	85	48.264	ENSACAG00000028464	RALYL	81	53.112	Anolis_carolinensis
ENSMZEG00005024249	-	85	49.638	ENSANAG00000023383	RALYL	80	55.022	Aotus_nancymaae
ENSMZEG00005024249	-	80	82.609	ENSACLG00000000995	-	81	84.545	Astatotilapia_calliptera
ENSMZEG00005024249	-	93	100.000	ENSACLG00000005707	-	100	100.000	Astatotilapia_calliptera
ENSMZEG00005024249	-	80	82.213	ENSACLG00000013636	-	87	78.947	Astatotilapia_calliptera
ENSMZEG00005024249	-	67	77.619	ENSAMXG00000042946	hnrnpc	97	75.393	Astyanax_mexicanus
ENSMZEG00005024249	-	83	78.571	ENSAMXG00000034915	zgc:55733	91	75.564	Astyanax_mexicanus
ENSMZEG00005024249	-	85	49.638	ENSCJAG00000000402	RALYL	80	55.022	Callithrix_jacchus
ENSMZEG00005024249	-	87	47.782	ENSCPOG00000012314	RALYL	81	52.917	Cavia_porcellus
ENSMZEG00005024249	-	85	49.638	ENSCCAG00000025003	RALYL	76	78.205	Cebus_capucinus
ENSMZEG00005024249	-	85	49.638	ENSCATG00000042145	RALYL	80	55.022	Cercocebus_atys
ENSMZEG00005024249	-	87	47.782	ENSCLAG00000005228	RALYL	81	52.917	Chinchilla_lanigera
ENSMZEG00005024249	-	67	54.667	ENSCHOG00000013228	RALYL	75	51.739	Choloepus_hoffmanni
ENSMZEG00005024249	-	85	49.110	ENSCANG00000039144	RALYL	80	55.022	Colobus_angolensis_palliatus
ENSMZEG00005024249	-	87	47.959	ENSCGRG00001009241	Ralyl	81	52.282	Cricetulus_griseus_chok1gshd
ENSMZEG00005024249	-	79	88.353	ENSCSEG00000021349	-	82	84.791	Cynoglossus_semilaevis
ENSMZEG00005024249	-	70	76.233	ENSCSEG00000019769	-	74	73.874	Cynoglossus_semilaevis
ENSMZEG00005024249	-	100	83.792	ENSCVAG00000016981	-	100	84.709	Cyprinodon_variegatus
ENSMZEG00005024249	-	86	65.455	ENSCVAG00000002797	-	86	64.865	Cyprinodon_variegatus
ENSMZEG00005024249	-	83	80.827	ENSDARG00000103845	zgc:55733	93	76.426	Danio_rerio
ENSMZEG00005024249	-	78	80.645	ENSDARG00000053810	hnrnpc	99	73.125	Danio_rerio
ENSMZEG00005024249	-	85	49.306	ENSDORG00000003721	Ralyl	81	53.112	Dipodomys_ordii
ENSMZEG00005024249	-	52	57.225	ENSETEG00000014028	RALYL	82	60.248	Echinops_telfairi
ENSMZEG00005024249	-	67	49.767	ENSEBUG00000006049	RALYL	74	47.418	Eptatretus_burgeri
ENSMZEG00005024249	-	68	47.982	ENSEBUG00000012363	hnrnpc	67	46.053	Eptatretus_burgeri
ENSMZEG00005024249	-	85	48.958	ENSEEUG00000007202	RALYL	82	53.333	Erinaceus_europaeus
ENSMZEG00005024249	-	80	80.074	ENSELUG00000007714	-	93	76.534	Esox_lucius
ENSMZEG00005024249	-	96	79.487	ENSELUG00000004132	-	99	77.244	Esox_lucius
ENSMZEG00005024249	-	86	46.599	ENSFALG00000008647	RALYL	96	57.746	Ficedula_albicollis
ENSMZEG00005024249	-	87	76.241	ENSFHEG00000003605	-	88	74.170	Fundulus_heteroclitus
ENSMZEG00005024249	-	97	80.909	ENSFHEG00000007278	-	100	80.909	Fundulus_heteroclitus
ENSMZEG00005024249	-	71	56.388	ENSGALG00000036938	RALYL	92	45.333	Gallus_gallus
ENSMZEG00005024249	-	87	76.241	ENSGAFG00000020486	-	99	68.847	Gambusia_affinis
ENSMZEG00005024249	-	97	84.713	ENSGAFG00000020992	-	100	86.943	Gambusia_affinis
ENSMZEG00005024249	-	100	80.606	ENSGACG00000017772	-	97	88.538	Gasterosteus_aculeatus
ENSMZEG00005024249	-	70	74.429	ENSGACG00000018932	-	89	68.000	Gasterosteus_aculeatus
ENSMZEG00005024249	-	85	49.638	ENSGGOG00000000841	RALYL	80	55.022	Gorilla_gorilla
ENSMZEG00005024249	-	80	83.004	ENSHBUG00000018342	-	99	67.160	Haplochromis_burtoni
ENSMZEG00005024249	-	100	99.687	ENSHBUG00000010527	-	100	99.687	Haplochromis_burtoni
ENSMZEG00005024249	-	87	47.440	ENSHGLG00000004866	RALYL	81	52.500	Heterocephalus_glaber_female
ENSMZEG00005024249	-	87	47.440	ENSHGLG00100017480	RALYL	81	52.500	Heterocephalus_glaber_male
ENSMZEG00005024249	-	82	86.131	ENSHCOG00000012333	hnrnpc	91	85.663	Hippocampus_comes
ENSMZEG00005024249	-	82	79.377	ENSIPUG00000011271	hnrnpc	98	80.088	Ictalurus_punctatus
ENSMZEG00005024249	-	83	80.451	ENSIPUG00000008666	zgc:55733	94	80.093	Ictalurus_punctatus
ENSMZEG00005024249	-	85	48.958	ENSSTOG00000012583	RALYL	82	52.697	Ictidomys_tridecemlineatus
ENSMZEG00005024249	-	86	79.336	ENSKMAG00000011170	-	84	79.468	Kryptolebias_marmoratus
ENSMZEG00005024249	-	100	86.687	ENSKMAG00000018265	-	100	86.068	Kryptolebias_marmoratus
ENSMZEG00005024249	-	89	72.852	ENSLBEG00000024418	-	86	72.075	Labrus_bergylta
ENSMZEG00005024249	-	100	85.938	ENSLBEG00000006193	-	100	84.639	Labrus_bergylta
ENSMZEG00005024249	-	86	77.860	ENSLBEG00000006979	-	86	76.190	Labrus_bergylta
ENSMZEG00005024249	-	83	70.522	ENSLOCG00000002560	hnrnpc	91	71.111	Lepisosteus_oculatus
ENSMZEG00005024249	-	85	49.638	ENSMNEG00000033288	RALYL	80	55.022	Macaca_nemestrina
ENSMZEG00005024249	-	85	49.638	ENSMLEG00000038284	RALYL	80	55.022	Mandrillus_leucophaeus
ENSMZEG00005024249	-	100	87.926	ENSMAMG00000008033	-	100	88.235	Mastacembelus_armatus
ENSMZEG00005024249	-	80	84.190	ENSMAMG00000012236	-	84	80.827	Mastacembelus_armatus
ENSMZEG00005024249	-	80	82.609	ENSMZEG00005020460	-	88	77.186	Maylandia_zebra
ENSMZEG00005024249	-	87	47.959	ENSMAUG00000015149	Ralyl	81	52.282	Mesocricetus_auratus
ENSMZEG00005024249	-	87	47.635	ENSMICG00000005558	RALYL	79	78.205	Microcebus_murinus
ENSMZEG00005024249	-	87	48.299	ENSMOCG00000017371	Ralyl	81	52.282	Microtus_ochrogaster
ENSMZEG00005024249	-	83	81.887	ENSMMOG00000021465	-	92	80.377	Mola_mola
ENSMZEG00005024249	-	90	88.095	ENSMMOG00000019520	-	100	82.993	Mola_mola
ENSMZEG00005024249	-	84	87.640	ENSMALG00000014623	-	84	88.015	Monopterus_albus
ENSMZEG00005024249	-	81	76.285	ENSMALG00000007520	-	85	72.374	Monopterus_albus
ENSMZEG00005024249	-	87	47.619	ENSMUSG00000039717	Ralyl	92	76.923	Mus_musculus
ENSMZEG00005024249	-	87	48.639	ENSMPUG00000010724	RALYL	81	51.867	Mustela_putorius_furo
ENSMZEG00005024249	-	87	48.299	ENSNGAG00000013375	Ralyl	81	52.282	Nannospalax_galili
ENSMZEG00005024249	-	100	98.750	ENSNBRG00000015676	-	100	98.750	Neolamprologus_brichardi
ENSMZEG00005024249	-	81	82.745	ENSNBRG00000004912	-	94	79.913	Neolamprologus_brichardi
ENSMZEG00005024249	-	85	49.638	ENSNLEG00000002702	RALYL	76	55.022	Nomascus_leucogenys
ENSMZEG00005024249	-	57	51.295	ENSOPRG00000013650	-	98	49.215	Ochotona_princeps
ENSMZEG00005024249	-	87	47.782	ENSODEG00000001012	RALYL	81	52.917	Octodon_degus
ENSMZEG00005024249	-	100	98.746	ENSONIG00000018350	-	100	98.746	Oreochromis_niloticus
ENSMZEG00005024249	-	80	83.794	ENSONIG00000007859	-	93	80.952	Oreochromis_niloticus
ENSMZEG00005024249	-	100	84.985	ENSORLG00000003144	-	100	85.586	Oryzias_latipes
ENSMZEG00005024249	-	80	73.333	ENSORLG00000009999	-	92	68.772	Oryzias_latipes
ENSMZEG00005024249	-	80	72.941	ENSORLG00020018228	hnrnpc	92	68.421	Oryzias_latipes_hni
ENSMZEG00005024249	-	100	85.373	ENSORLG00015009460	-	100	85.373	Oryzias_latipes_hsok
ENSMZEG00005024249	-	80	73.333	ENSORLG00015019755	-	92	68.772	Oryzias_latipes_hsok
ENSMZEG00005024249	-	100	87.888	ENSOMEG00000022665	-	100	88.509	Oryzias_melastigma
ENSMZEG00005024249	-	80	74.510	ENSOMEG00000020488	-	85	70.896	Oryzias_melastigma
ENSMZEG00005024249	-	85	49.638	ENSPPAG00000038705	RALYL	80	55.022	Pan_paniscus
ENSMZEG00005024249	-	87	51.056	ENSPPRG00000018612	RALYL	80	54.978	Panthera_pardus
ENSMZEG00005024249	-	87	51.056	ENSPTIG00000020331	RALYL	80	54.978	Panthera_tigris_altaica
ENSMZEG00005024249	-	85	49.638	ENSPTRG00000020381	RALYL	80	55.022	Pan_troglodytes
ENSMZEG00005024249	-	85	49.638	ENSPANG00000029305	RALYL	80	55.022	Papio_anubis
ENSMZEG00005024249	-	84	79.197	ENSPKIG00000008592	-	100	73.926	Paramormyrops_kingsleyae
ENSMZEG00005024249	-	84	76.838	ENSPKIG00000022837	-	98	75.776	Paramormyrops_kingsleyae
ENSMZEG00005024249	-	87	47.973	ENSPSIG00000011135	RALYL	80	52.697	Pelodiscus_sinensis
ENSMZEG00005024249	-	95	62.583	ENSPMGG00000017774	-	96	62.281	Periophthalmus_magnuspinnatus
ENSMZEG00005024249	-	69	91.284	ENSPMGG00000013144	-	81	87.907	Periophthalmus_magnuspinnatus
ENSMZEG00005024249	-	87	47.959	ENSPEMG00000016447	Ralyl	81	52.282	Peromyscus_maniculatus_bairdii
ENSMZEG00005024249	-	69	53.017	ENSPMAG00000002407	RALYL	99	51.739	Petromyzon_marinus
ENSMZEG00005024249	-	100	84.877	ENSPFOG00000002643	-	100	86.111	Poecilia_formosa
ENSMZEG00005024249	-	87	76.512	ENSPFOG00000001583	-	99	70.405	Poecilia_formosa
ENSMZEG00005024249	-	87	75.445	ENSPLAG00000015305	-	99	69.470	Poecilia_latipinna
ENSMZEG00005024249	-	100	84.923	ENSPLAG00000000061	-	100	84.000	Poecilia_latipinna
ENSMZEG00005024249	-	87	78.014	ENSPMEG00000004802	-	98	70.347	Poecilia_mexicana
ENSMZEG00005024249	-	100	84.259	ENSPMEG00000016524	-	100	85.494	Poecilia_mexicana
ENSMZEG00005024249	-	80	78.740	ENSPREG00000007928	-	87	74.908	Poecilia_reticulata
ENSMZEG00005024249	-	84	89.139	ENSPREG00000001852	-	89	88.390	Poecilia_reticulata
ENSMZEG00005024249	-	85	41.758	ENSPPYG00000018710	-	68	72.816	Pongo_abelii
ENSMZEG00005024249	-	83	48.399	ENSPVAG00000010821	RALYL	80	52.083	Pteropus_vampyrus
ENSMZEG00005024249	-	81	83.137	ENSPNYG00000020293	-	87	79.615	Pundamilia_nyererei
ENSMZEG00005024249	-	90	99.303	ENSPNYG00000003747	-	96	99.303	Pundamilia_nyererei
ENSMZEG00005024249	-	83	74.539	ENSPNAG00000019200	zgc:55733	86	74.539	Pygocentrus_nattereri
ENSMZEG00005024249	-	78	80.242	ENSPNAG00000015686	hnrnpc	89	78.652	Pygocentrus_nattereri
ENSMZEG00005024249	-	85	49.638	ENSRROG00000023925	RALYL	81	76.250	Rhinopithecus_roxellana
ENSMZEG00005024249	-	87	77.431	ENSSFOG00015012924	-	80	98.734	Scleropages_formosus
ENSMZEG00005024249	-	84	76.190	ENSSFOG00015012015	-	95	74.154	Scleropages_formosus
ENSMZEG00005024249	-	100	85.015	ENSSMAG00000011147	-	100	85.627	Scophthalmus_maximus
ENSMZEG00005024249	-	80	79.051	ENSSMAG00000013592	-	99	73.209	Scophthalmus_maximus
ENSMZEG00005024249	-	87	80.357	ENSSDUG00000001723	-	99	75.000	Seriola_dumerili
ENSMZEG00005024249	-	100	87.774	ENSSDUG00000006730	-	100	86.520	Seriola_dumerili
ENSMZEG00005024249	-	84	88.015	ENSSLDG00000007474	-	92	87.266	Seriola_lalandi_dorsalis
ENSMZEG00005024249	-	85	82.222	ENSSLDG00000007454	-	87	80.741	Seriola_lalandi_dorsalis
ENSMZEG00005024249	-	61	72.816	ENSSARG00000002374	RALYL	82	45.106	Sorex_araneus
ENSMZEG00005024249	-	86	82.288	ENSSPAG00000023204	-	85	81.579	Stegastes_partitus
ENSMZEG00005024249	-	100	89.655	ENSSPAG00000013996	-	100	91.562	Stegastes_partitus
ENSMZEG00005024249	-	84	48.958	ENSTGUG00000011689	RALYL	81	53.814	Taeniopygia_guttata
ENSMZEG00005024249	-	81	79.845	ENSTRUG00000020158	-	99	72.078	Takifugu_rubripes
ENSMZEG00005024249	-	81	77.907	ENSTNIG00000007427	-	84	76.718	Tetraodon_nigroviridis
ENSMZEG00005024249	-	80	78.175	ENSTNIG00000000334	-	94	76.336	Tetraodon_nigroviridis
ENSMZEG00005024249	-	69	48.511	ENSTBEG00000005551	RALYL	92	48.101	Tupaia_belangeri
ENSMZEG00005024249	-	85	47.703	ENSTTRG00000015762	RALYL	80	51.915	Tursiops_truncatus
ENSMZEG00005024249	-	85	46.931	ENSVPAG00000008501	RALYL	81	50.216	Vicugna_pacos
ENSMZEG00005024249	-	89	72.085	ENSXCOG00000006552	-	84	70.455	Xiphophorus_couchianus
ENSMZEG00005024249	-	87	76.596	ENSXMAG00000009333	-	99	69.159	Xiphophorus_maculatus
ENSMZEG00005024249	-	84	89.139	ENSXMAG00000022849	-	86	88.390	Xiphophorus_maculatus