EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005024349 (Gene tree)
Gene ID: 101483184
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 12819 bases
Position: chrLG10:15450271-15463089
Accession: 101483184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005032685	RRM_1	PF00076.22	5.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005033744	-	6182	XM_012918922	ENSMZEP00005032685	1124 (aa)	XP_012774376	UPI000D324D0A

Gene Model

Click here to download ENSMZEG00005024349's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005024349's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005024349	scaf4a	100	80.509	ENSAPOG00000002946	scaf4a	99	81.826	Acanthochromis_polyacanthus
ENSMZEG00005024349	scaf4a	61	50.072	ENSAPOG00000019615	scaf4b	61	59.031	Acanthochromis_polyacanthus
ENSMZEG00005024349	scaf4a	100	81.930	ENSAOCG00000000615	scaf4a	99	82.281	Amphiprion_ocellaris
ENSMZEG00005024349	scaf4a	100	81.810	ENSAPEG00000021229	scaf4a	99	82.074	Amphiprion_percula
ENSMZEG00005024349	scaf4a	50	66.960	ENSACAG00000002569	SCAF4	72	49.275	Anolis_carolinensis
ENSMZEG00005024349	scaf4a	91	51.524	ENSAMXG00000008585	scaf4a	99	53.066	Astyanax_mexicanus
ENSMZEG00005024349	scaf4a	54	60.092	ENSCAFG00020026019	SCAF4	77	60.784	Canis_lupus_dingo
ENSMZEG00005024349	scaf4a	55	61.161	ENSCPOG00000012443	SCAF4	71	54.726	Cavia_porcellus
ENSMZEG00005024349	scaf4a	100	70.207	ENSCSEG00000019549	scaf4a	99	68.734	Cynoglossus_semilaevis
ENSMZEG00005024349	scaf4a	85	56.199	ENSDARG00000077093	scaf4a	99	51.668	Danio_rerio
ENSMZEG00005024349	scaf4a	78	83.854	ENSELUG00000009909	scaf4a	93	81.900	Esox_lucius
ENSMZEG00005024349	scaf4a	59	56.159	ENSFHEG00000007634	scaf4b	52	75.887	Fundulus_heteroclitus
ENSMZEG00005024349	scaf4a	67	76.903	ENSFHEG00000017866	scaf4a	93	77.580	Fundulus_heteroclitus
ENSMZEG00005024349	scaf4a	65	81.216	ENSGAFG00000019460	scaf4a	94	75.326	Gambusia_affinis
ENSMZEG00005024349	scaf4a	74	76.623	ENSGACG00000020580	scaf4a	84	75.711	Gasterosteus_aculeatus
ENSMZEG00005024349	scaf4a	100	96.941	ENSHBUG00000007920	scaf4a	99	96.941	Haplochromis_burtoni
ENSMZEG00005024349	scaf4a	60	58.029	ENSKMAG00000005742	scaf4b	52	73.239	Kryptolebias_marmoratus
ENSMZEG00005024349	scaf4a	98	74.575	ENSLBEG00000014675	scaf4a	99	75.828	Labrus_bergylta
ENSMZEG00005024349	scaf4a	75	48.687	ENSLACG00000013913	SCAF4	75	49.897	Latimeria_chalumnae
ENSMZEG00005024349	scaf4a	52	48.445	ENSLOCG00000009162	scaf4a	86	57.949	Lepisosteus_oculatus
ENSMZEG00005024349	scaf4a	74	77.215	ENSMAMG00000013223	scaf4a	99	77.093	Mastacembelus_armatus
ENSMZEG00005024349	scaf4a	77	82.007	ENSMALG00000013825	scaf4a	94	82.007	Monopterus_albus
ENSMZEG00005024349	scaf4a	100	95.826	ENSONIG00000004687	scaf4a	99	95.826	Oreochromis_niloticus
ENSMZEG00005024349	scaf4a	99	70.085	ENSORLG00000004384	scaf4a	99	69.492	Oryzias_latipes
ENSMZEG00005024349	scaf4a	99	69.126	ENSORLG00020011857	scaf4a	99	68.475	Oryzias_latipes_hni
ENSMZEG00005024349	scaf4a	99	70.399	ENSORLG00015017880	scaf4a	99	70.222	Oryzias_latipes_hsok
ENSMZEG00005024349	scaf4a	99	70.268	ENSOMEG00000014482	scaf4a	99	71.283	Oryzias_melastigma
ENSMZEG00005024349	scaf4a	61	65.211	ENSPKIG00000022408	scaf4a	99	65.621	Paramormyrops_kingsleyae
ENSMZEG00005024349	scaf4a	86	72.671	ENSPFOG00000017156	scaf4a	97	74.691	Poecilia_formosa
ENSMZEG00005024349	scaf4a	71	77.875	ENSPLAG00000001972	scaf4a	95	79.464	Poecilia_latipinna
ENSMZEG00005024349	scaf4a	60	56.364	ENSPLAG00000004403	-	51	70.423	Poecilia_latipinna
ENSMZEG00005024349	scaf4a	60	57.091	ENSPMEG00000006666	-	51	71.831	Poecilia_mexicana
ENSMZEG00005024349	scaf4a	50	74.638	ENSPNAG00000015199	-	50	74.638	Pygocentrus_nattereri
ENSMZEG00005024349	scaf4a	88	45.779	ENSSFOG00015006338	scaf4a	99	48.068	Scleropages_formosus
ENSMZEG00005024349	scaf4a	99	74.427	ENSSMAG00000017901	scaf4a	99	74.894	Scophthalmus_maximus
ENSMZEG00005024349	scaf4a	100	81.065	ENSSDUG00000012918	scaf4a	99	81.027	Seriola_dumerili
ENSMZEG00005024349	scaf4a	100	81.239	ENSSLDG00000021671	scaf4a	99	81.636	Seriola_lalandi_dorsalis
ENSMZEG00005024349	scaf4a	61	47.445	ENSTRUG00000009536	-	72	53.791	Takifugu_rubripes
ENSMZEG00005024349	scaf4a	64	60.914	ENSTNIG00000016885	SCAF8	51	52.117	Tetraodon_nigroviridis
ENSMZEG00005024349	scaf4a	60	55.230	ENSXETG00000007351	scaf4	87	50.195	Xenopus_tropicalis